| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103486384
Identifier: 103486384
GI number: 103486384
Start: 902631
End: 904010
Strand: Direct
Name: 103486384
Synonym: Sala_0894
Alternate gene names: NA
Gene position: 902631-904010 (Clockwise)
Preceding gene: 103486383
Following gene: 103486385
Centisome position: 26.98
GC content: 67.75
Gene sequence:
>1380_bases ATGACGAGGCTCCCCGCCTCGCTGCTTCCCGAAGGGCTGACCGCTGCTGTCGAAGAGGCCAGCGGCGCGCGGGTCGTCGC GGTTCGACCGCGCGGCGGGGGCGGCGCCTCGCGCGACGGGGCGGAACTGGATCTGGCCTGGCCCGACGGACGCACCGCCA GCGCCTATATGAATTACGACGTCCATCGGGCGGGGGCGGGCGATGATGCGTCCTTCCTGCGCGAGGCTGCAGTTTTGCGC GCGCTGTCGGGTCCGCTGGCGTTGGCCGGGGTGCGCGTCGCGCCCTATTATGCCTCAGTGCCAGATCAACGCGCGCTCGT TTGCGGGCTGGTTGCCGGATGCGACCGTTTCGGCGCGATCACCGATCCGGTTCAGCGCGATGCGCTCGCCGCCGATTTCA TGGCACAGCTGGCCGCGCTCCATCGCATCGACATTGCGAAACAGCCCATCGAAGGCATGGGACCGATCGAATCCGCCGAT GTGTTTGCGCGGCGCCGTATCGCCGGTCTGCGCGCGGGGAACAGCGGCCGCGCCTGGGATCCGTTGATCCATCTTGCGCT CGATTGGCTGGAGGCCAATATCCCCGCCGACATGCCGCCGCCGGCCATCGTTCACGGTGACGCCGGGCCGGGCAATTTCC TGTTCGAAGGCGACCGCGTGACCGCGTTGCTGGACTGGGAACTGGTCCATTATGGCGACCCGATGGCCGATCTGGCGATG CTCTGCTTGCGGATGCTGTTTCAGGGCTTCGTGCCCTTGCCCCAGGCGTTCGCGGCATATGAAGCGGCGGGGGGGCATAG CGTCGACCGCGCGCGGCTGCGCTTTTGGCGGCTTTTATTTCAGACGGCTTTCGCCCGGCGTTCGCGCTACGACGATCCCG ACGCCCCGCCGCCGCCCAATCTCGGCATGAACCTCGTCTATTCGACGATCCACCGCCGCGTTCTGTCGCAGGCGCTGGCA GAGGCGGCGGGGGTCGCCTTGCCGCCAGTGGCGATGCCCGATGCGGCGCCGGGCGCCCATGATCGCAGCTTTGCCGTCGC GCTCGACGATATTCGCGACACGATCGTCCCCCGCCTTTCGGACCAGCAGGCGGCGGTTAAGGCAAAAGGCTTGGCGCGGC TCATCAAATGGTGGCGGGCGATCGAACGCTATCAGCCAGGCTTCCACGCTGCCGAGCGGCTGGAGATAAGCGCCGCGCTG CGACGCGATTTTCCGGATCATGGCGCGGCCTGGTCGGCCTTCTGTCAGGCGGTAAGCGACGGCGGCATCGAAACGGAAGC AGCGATCATCCTCTGCAACGCGCACGCCGCCAGGGAAGCCGCGTTGCTTGCCGATTCGATGGGCGGCCTTGCGGAGACCA GGCTGGCGCCGCTCGACTAG
Upstream 100 bases:
>100_bases ATTGCTGTCCGGCCGTAGGTGAGCATAGCGATGAAATATTGCGCGAAATCGGCTTTTCGGATGTCGAGATCGCGGAGTTT CGCGCTCAGGGAGTTGTCGG
Downstream 100 bases:
>100_bases GGTCCTGACCCTGGAACTCCCCGATCGATTTTTGACACTATGTCAATGGCGCGTCTTGTTCGATTTCTATTTGATTTTCG AGAAAAACTAGAAGTGAGAG
Product: aminoglycoside phosphotransferase
Products: NA
Alternate protein names: Phosphotransferase Family Protein; Phosphotransferase; Tyrosine Protein KinaseAminoglycoside Phosphotransferase; Aminoglycoside Phospho-Transferase
Number of amino acids: Translated: 459; Mature: 458
Protein sequence:
>459_residues MTRLPASLLPEGLTAAVEEASGARVVAVRPRGGGGASRDGAELDLAWPDGRTASAYMNYDVHRAGAGDDASFLREAAVLR ALSGPLALAGVRVAPYYASVPDQRALVCGLVAGCDRFGAITDPVQRDALAADFMAQLAALHRIDIAKQPIEGMGPIESAD VFARRRIAGLRAGNSGRAWDPLIHLALDWLEANIPADMPPPAIVHGDAGPGNFLFEGDRVTALLDWELVHYGDPMADLAM LCLRMLFQGFVPLPQAFAAYEAAGGHSVDRARLRFWRLLFQTAFARRSRYDDPDAPPPPNLGMNLVYSTIHRRVLSQALA EAAGVALPPVAMPDAAPGAHDRSFAVALDDIRDTIVPRLSDQQAAVKAKGLARLIKWWRAIERYQPGFHAAERLEISAAL RRDFPDHGAAWSAFCQAVSDGGIETEAAIILCNAHAAREAALLADSMGGLAETRLAPLD
Sequences:
>Translated_459_residues MTRLPASLLPEGLTAAVEEASGARVVAVRPRGGGGASRDGAELDLAWPDGRTASAYMNYDVHRAGAGDDASFLREAAVLR ALSGPLALAGVRVAPYYASVPDQRALVCGLVAGCDRFGAITDPVQRDALAADFMAQLAALHRIDIAKQPIEGMGPIESAD VFARRRIAGLRAGNSGRAWDPLIHLALDWLEANIPADMPPPAIVHGDAGPGNFLFEGDRVTALLDWELVHYGDPMADLAM LCLRMLFQGFVPLPQAFAAYEAAGGHSVDRARLRFWRLLFQTAFARRSRYDDPDAPPPPNLGMNLVYSTIHRRVLSQALA EAAGVALPPVAMPDAAPGAHDRSFAVALDDIRDTIVPRLSDQQAAVKAKGLARLIKWWRAIERYQPGFHAAERLEISAAL RRDFPDHGAAWSAFCQAVSDGGIETEAAIILCNAHAAREAALLADSMGGLAETRLAPLD >Mature_458_residues TRLPASLLPEGLTAAVEEASGARVVAVRPRGGGGASRDGAELDLAWPDGRTASAYMNYDVHRAGAGDDASFLREAAVLRA LSGPLALAGVRVAPYYASVPDQRALVCGLVAGCDRFGAITDPVQRDALAADFMAQLAALHRIDIAKQPIEGMGPIESADV FARRRIAGLRAGNSGRAWDPLIHLALDWLEANIPADMPPPAIVHGDAGPGNFLFEGDRVTALLDWELVHYGDPMADLAML CLRMLFQGFVPLPQAFAAYEAAGGHSVDRARLRFWRLLFQTAFARRSRYDDPDAPPPPNLGMNLVYSTIHRRVLSQALAE AAGVALPPVAMPDAAPGAHDRSFAVALDDIRDTIVPRLSDQQAAVKAKGLARLIKWWRAIERYQPGFHAAERLEISAALR RDFPDHGAAWSAFCQAVSDGGIETEAAIILCNAHAAREAALLADSMGGLAETRLAPLD
Specific function: Unknown
COG id: COG3173
COG function: function code R; Predicted aminoglycoside phosphotransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49045; Mature: 48914
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRLPASLLPEGLTAAVEEASGARVVAVRPRGGGGASRDGAELDLAWPDGRTASAYMNYD CCCCCHHHCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCEEEEECCC VHRAGAGDDASFLREAAVLRALSGPLALAGVRVAPYYASVPDQRALVCGLVAGCDRFGAI EEECCCCCHHHHHHHHHHHHHHCCCHHHHCEEECCEECCCCCCHHHHHHHHHHHHHCCCC TDPVQRDALAADFMAQLAALHRIDIAKQPIEGMGPIESADVFARRRIAGLRAGNSGRAWD CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHH PLIHLALDWLEANIPADMPPPAIVHGDAGPGNFLFEGDRVTALLDWELVHYGDPMADLAM HHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEECCCEEEEEEEEHHHCCCCHHHHHH LCLRMLFQGFVPLPQAFAAYEAAGGHSVDRARLRFWRLLFQTAFARRSRYDDPDAPPPPN HHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC LGMNLVYSTIHRRVLSQALAEAAGVALPPVAMPDAAPGAHDRSFAVALDDIRDTIVPRLS CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCC DQQAAVKAKGLARLIKWWRAIERYQPGFHAAERLEISAALRRDFPDHGAAWSAFCQAVSD CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC GGIETEAAIILCNAHAAREAALLADSMGGLAETRLAPLD CCCCCCEEEEEECCHHHHHHHHHHHHHCCHHHCCCCCCC >Mature Secondary Structure TRLPASLLPEGLTAAVEEASGARVVAVRPRGGGGASRDGAELDLAWPDGRTASAYMNYD CCCCHHHCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCEEEEECCC VHRAGAGDDASFLREAAVLRALSGPLALAGVRVAPYYASVPDQRALVCGLVAGCDRFGAI EEECCCCCHHHHHHHHHHHHHHCCCHHHHCEEECCEECCCCCCHHHHHHHHHHHHHCCCC TDPVQRDALAADFMAQLAALHRIDIAKQPIEGMGPIESADVFARRRIAGLRAGNSGRAWD CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHH PLIHLALDWLEANIPADMPPPAIVHGDAGPGNFLFEGDRVTALLDWELVHYGDPMADLAM HHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEECCCEEEEEEEEHHHCCCCHHHHHH LCLRMLFQGFVPLPQAFAAYEAAGGHSVDRARLRFWRLLFQTAFARRSRYDDPDAPPPPN HHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC LGMNLVYSTIHRRVLSQALAEAAGVALPPVAMPDAAPGAHDRSFAVALDDIRDTIVPRLS CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCC DQQAAVKAKGLARLIKWWRAIERYQPGFHAAERLEISAALRRDFPDHGAAWSAFCQAVSD CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC GGIETEAAIILCNAHAAREAALLADSMGGLAETRLAPLD CCCCCCEEEEEECCHHHHHHHHHHHHHCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA