BacMap

Definition	Sphingopyxis alaskensis RB2256, complete genome.
Accession	NC_008048
Length	3,345,170

Click here to switch to the map view.

The map label for this gene is ucpA [C]

Identifier: 103486387

GI number: 103486387

Start: 905739

End: 906521

Strand: Direct

Name: ucpA [C]

Synonym: Sala_0897

Alternate gene names: 103486387

Gene position: 905739-906521 (Clockwise)

Preceding gene: 103486385

Following gene: 103486388

Centisome position: 27.08

GC content: 63.09

Gene sequence:

>783_bases
ATGGAAAGGCTGGCTGGCAAGGCCGCGATCGTAACCGGCGCGTCAAAGGGGATGGGGCGGCATTTCGTTGCCGCGCTGGT
GGAAAACGGGATGCGTGTCGCCTGCCTTGCGCGGCCTTCCGACGAACTGGCATCGCTGGCCGACGATTTCGGGGAAGCGG
TGCTGGCTCTGCCTTGTGACGTTACGGTTCCCGAAGCCGTCGATAGAGCCGTTGCACGGGCGGTGGAGGCGTTCGGCCAC
CTCGACGTGGTGATTGCCAATGCCGCCGTCTATCACCCCTTCGCTTTCGAGCAAGGCAGCGACGACATGATCCGCAACCA
TGTCGATATCAATGTCCTGGGGGTTGCCTGGCTGATCCGCGCCAGCATTCCGCACCTGCGCGCCACCGGGGGACAGATCG
TCGCGATCAGCAGCGAATCGGTGCGAATGCCCTTTCCGATGCTGGCGCTTTACGCTGCGACAAAGGCAGCAGTCGAAACC
CTGTGCAACGGGCTGCGCGACGAGCTGCGATCCGACGATATTCGCGTCACCATATTGCGTTCGGGTTCGGTGAAGGGCGG
TTCGGGCGGAAAAGCCTGGTCACAGGAAACCGTCGCCGCCTTTTACAAGAAAATCGTCGAAACCGGCCACGCTGCAATGA
GCGGGGACTCGGCGACCCCGGAATCGATGGCCGAAGCCTTGCTGGCCGTCATCGGTCTGCCAGCCGACATCGGCGTCGAT
CTCATCGAGGTGCGCGCCGCACAGGAAGGGGCGCCCGAGGGAGCAAAGCAGGTAGCCGAATAG

Upstream 100 bases:

>100_bases
CCCAATTTTCGCCCATCATCCTAACAGCGGGGTTGCGATATGGCAAAAAATTGACGTATCGTCAAAAATAACAGGAAAAC
ACGGAAATCGGGGATTCGGG

Downstream 100 bases:

>100_bases
GGTGGGGGACCGGCGCAACCTGCCGTTGTTGATCGGCGCCCTCTGGGTCGCGGAAGTCACCGGATCGTTCGAAACGGCGA
TGATCCTTGCCGCGCTCAAG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MERLAGKAAIVTGASKGMGRHFVAALVENGMRVACLARPSDELASLADDFGEAVLALPCDVTVPEAVDRAVARAVEAFGH
LDVVIANAAVYHPFAFEQGSDDMIRNHVDINVLGVAWLIRASIPHLRATGGQIVAISSESVRMPFPMLALYAATKAAVET
LCNGLRDELRSDDIRVTILRSGSVKGGSGGKAWSQETVAAFYKKIVETGHAAMSGDSATPESMAEALLAVIGLPADIGVD
LIEVRAAQEGAPEGAKQVAE

Sequences:

>Translated_260_residues
MERLAGKAAIVTGASKGMGRHFVAALVENGMRVACLARPSDELASLADDFGEAVLALPCDVTVPEAVDRAVARAVEAFGH
LDVVIANAAVYHPFAFEQGSDDMIRNHVDINVLGVAWLIRASIPHLRATGGQIVAISSESVRMPFPMLALYAATKAAVET
LCNGLRDELRSDDIRVTILRSGSVKGGSGGKAWSQETVAAFYKKIVETGHAAMSGDSATPESMAEALLAVIGLPADIGVD
LIEVRAAQEGAPEGAKQVAE
>Mature_260_residues
MERLAGKAAIVTGASKGMGRHFVAALVENGMRVACLARPSDELASLADDFGEAVLALPCDVTVPEAVDRAVARAVEAFGH
LDVVIANAAVYHPFAFEQGSDDMIRNHVDINVLGVAWLIRASIPHLRATGGQIVAISSESVRMPFPMLALYAATKAAVET
LCNGLRDELRSDDIRVTILRSGSVKGGSGGKAWSQETVAAFYKKIVETGHAAMSGDSATPESMAEALLAVIGLPADIGVD
LIEVRAAQEGAPEGAKQVAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=263, Percent_Identity=28.5171102661597, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI32455239, Length=184, Percent_Identity=30.4347826086957, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI5031765, Length=184, Percent_Identity=30.4347826086957, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI32483357, Length=196, Percent_Identity=30.1020408163265, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI7705855, Length=178, Percent_Identity=25.8426966292135, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI126723191, Length=200, Percent_Identity=29, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7705925, Length=203, Percent_Identity=30.0492610837438, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI226371731, Length=181, Percent_Identity=27.0718232044199, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI20149619, Length=185, Percent_Identity=24.8648648648649, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI7706318, Length=174, Percent_Identity=28.1609195402299, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI33667109, Length=260, Percent_Identity=25.3846153846154, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI87082100, Length=190, Percent_Identity=34.7368421052632, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1787820, Length=239, Percent_Identity=25.9414225941423, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789378, Length=209, Percent_Identity=30.1435406698565, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787335, Length=181, Percent_Identity=26.5193370165746, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=244, Percent_Identity=27.8688524590164, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=239, Percent_Identity=28.4518828451883, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=239, Percent_Identity=25.5230125523013, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=241, Percent_Identity=27.8008298755187, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=245, Percent_Identity=26.9387755102041, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=209, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=199, Percent_Identity=27.6381909547739, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=240, Percent_Identity=25.8333333333333, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=242, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=207, Percent_Identity=28.5024154589372, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=247, Percent_Identity=26.7206477732794, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=231, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=201, Percent_Identity=27.363184079602, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=196, Percent_Identity=27.0408163265306, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17544670, Length=195, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=207, Percent_Identity=27.0531400966184, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322226, Length=168, Percent_Identity=29.1666666666667, Blast_Score=77, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=181, Percent_Identity=30.3867403314917, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=209, Percent_Identity=30.1435406698565, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=29.7435897435897, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24663911, Length=269, Percent_Identity=26.3940520446097, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21358495, Length=238, Percent_Identity=25.6302521008403, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281364494, Length=267, Percent_Identity=27.7153558052434, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24641388, Length=191, Percent_Identity=30.3664921465969, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24584748, Length=186, Percent_Identity=27.4193548387097, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI161076933, Length=186, Percent_Identity=27.4193548387097, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24643142, Length=191, Percent_Identity=30.8900523560209, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648944, Length=189, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007238, Length=192, Percent_Identity=29.6875, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007236, Length=192, Percent_Identity=29.6875, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355319, Length=190, Percent_Identity=28.9473684210526, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28571526, Length=213, Percent_Identity=27.6995305164319, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24648693, Length=201, Percent_Identity=31.3432835820896, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355889, Length=201, Percent_Identity=31.3432835820896, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24641232, Length=191, Percent_Identity=27.2251308900524, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27144; Mature: 27144

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERLAGKAAIVTGASKGMGRHFVAALVENGMRVACLARPSDELASLADDFGEAVLALPCD
CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCEEEECCCC
VTVPEAVDRAVARAVEAFGHLDVVIANAAVYHPFAFEQGSDDMIRNHVDINVLGVAWLIR
CCCHHHHHHHHHHHHHHHCCHHEEEECHHHCCCCCCCCCCHHHHHHCCCEEHHHHHHHHH
ASIPHLRATGGQIVAISSESVRMPFPMLALYAATKAAVETLCNGLRDELRSDDIRVTILR
HCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
SGSVKGGSGGKAWSQETVAAFYKKIVETGHAAMSGDSATPESMAEALLAVIGLPADIGVD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHCCCHHCCCH
LIEVRAAQEGAPEGAKQVAE
HHHHHHHHCCCCHHHHHHCC
>Mature Secondary Structure
MERLAGKAAIVTGASKGMGRHFVAALVENGMRVACLARPSDELASLADDFGEAVLALPCD
CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCEEEECCCC
VTVPEAVDRAVARAVEAFGHLDVVIANAAVYHPFAFEQGSDDMIRNHVDINVLGVAWLIR
CCCHHHHHHHHHHHHHHHCCHHEEEECHHHCCCCCCCCCCHHHHHHCCCEEHHHHHHHHH
ASIPHLRATGGQIVAISSESVRMPFPMLALYAATKAAVETLCNGLRDELRSDDIRVTILR
HCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
SGSVKGGSGGKAWSQETVAAFYKKIVETGHAAMSGDSATPESMAEALLAVIGLPADIGVD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHCCCHHCCCH
LIEVRAAQEGAPEGAKQVAE
HHHHHHHHCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA