Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is yqgH [H]

Identifier: 103486315

GI number: 103486315

Start: 828384

End: 829760

Strand: Reverse

Name: yqgH [H]

Synonym: Sala_0825

Alternate gene names: 103486315

Gene position: 829760-828384 (Counterclockwise)

Preceding gene: 103486316

Following gene: 103486314

Centisome position: 24.8

GC content: 67.54

Gene sequence:

>1377_bases
GTGACCTTCAACGCCGCCGCCCTCTTGCTGTTGATTGCGGGCCTTGCGCTGATCGGCTGGCTGGCCGGGCGCGCGCGGTC
GAACCTGCTCGCGGGGCGCGCGGGGACGAAGCTGCATTCGCGGCCGCAATATCATGGCTGGTATGTCGCGCTGTGGCTGT
TTGCGCCCGCGGCGATTTTCCTCGCCGTCTGGTCGTCGGTGTCGCCCGCGCTGATCACCAATCAGGTGCTGGCGAGCGAA
GCGGCGCAGGGCCTGCCAAGTTTCGGGTTCGAGCGCGGGGCGATCCTGTCCGACGCGCGCGACGTGGCGCAGGGGCGCGC
CGCCGACGTGCGCCTGCCCGCCGCCGAACCGCTGGTCAAACCCTATGCCGACGCGAGCCGCAAATATGCGTGGATCGGCA
TCGCGGCGATGCTGGCGCTGGCGCTGGCGGGCGGGCTCTATGCCTTCACGCGCATCAAGCCCGATTTCCGGGCGCGAACG
CGGGTCGAGCGGATCGTCATGCTGGTGCTGCTGCTCGCGTCGCTCGTCGCGATCCTGACGACCTTTGGCATCGTGCTGTC
GCTGCTCTTCGAATCGATCCGCTTCTTCCGCCTCGTCTCGCCCGCCGAGCTGCTGTTCGGCACGACCTGGGCCCCGCAGA
GCGGCGCACCGCAGCCCGATACCTTCGGCGGCATTCCCTTGTTCTGGGGCACGGTGCTGATCGGCGCGATCATCGCGATG
ATCGTCGCGATCCCGATCGGGATGATGACCGCCGTGTATCTGACCCAATATGCCGCTCCCGCGGTGCGCCGCTGGGTCAA
GCCGATCCTCGAGATCCTCGCGGGCGTGCCGACGGTCGTCTACGGCTATTTCGCCGCGCTGACGGTGGCGCCCGCCTTGC
GCAACTTCGCAGTGATGCTGGGCATCCCCAACGCCTCGACCGAAAGCGCGCTGGCGGCGGGCATCGTGATGGGCGTGATG
ATCATCCCCTTCGTCTCGTCGATGGCCGACGACAGCATCAACGCGGTGCCGCAGGCGATGCGCGACGGATCGCTGGCGCT
GGGCGCCACGCCGAACGAGACGATCCGCCAGGTGCTGATCCCCGCCGCGCTGCCCGGCGTGATGGGCGGCATTTTGCTCG
CGGTCAGCCGCGCGATCGGCGAGACGATGATCGTCGTGATGGCCGCGGGCCTGTCGGCGAACCTGACCGCCAACCCCTTT
GCCAGCGTCACCACGGTGACCGCGCAGATCGTCAAGCTGCTGACCGGCGATCAGGAGTTCGACAGCGCCAAGACGCTCGC
CGCCTTTGCGCTTGGCCTTGTGCTGTTCATCGTCACCCTGCTGCTCAACATCGCCGCGCTGCGGATCGTGAAAAAGTATC
GCGAAGCTTATGAATAG

Upstream 100 bases:

>100_bases
TTTGGGCGACGACAAAGATTATGACGCAGAGTCATCAAATTGCCACGCCGCCCCGCTTTGGGATGGCGACGACGAGCCTA
GACGCGATACGGGGACATAA

Downstream 100 bases:

>100_bases
AGACACCGCCCCGACCGACTGGAAAGCCGCGGCGATGCAGAAACGCATCGCGGGCCGCTATGCCGCCGAACGCCGGTTCA
AGGCGATCGGGCTGGCGGCG

Product: phosphate ABC transporter permease

Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MTFNAAALLLLIAGLALIGWLAGRARSNLLAGRAGTKLHSRPQYHGWYVALWLFAPAAIFLAVWSSVSPALITNQVLASE
AAQGLPSFGFERGAILSDARDVAQGRAADVRLPAAEPLVKPYADASRKYAWIGIAAMLALALAGGLYAFTRIKPDFRART
RVERIVMLVLLLASLVAILTTFGIVLSLLFESIRFFRLVSPAELLFGTTWAPQSGAPQPDTFGGIPLFWGTVLIGAIIAM
IVAIPIGMMTAVYLTQYAAPAVRRWVKPILEILAGVPTVVYGYFAALTVAPALRNFAVMLGIPNASTESALAAGIVMGVM
IIPFVSSMADDSINAVPQAMRDGSLALGATPNETIRQVLIPAALPGVMGGILLAVSRAIGETMIVVMAAGLSANLTANPF
ASVTTVTAQIVKLLTGDQEFDSAKTLAAFALGLVLFIVTLLLNIAALRIVKKYREAYE

Sequences:

>Translated_458_residues
MTFNAAALLLLIAGLALIGWLAGRARSNLLAGRAGTKLHSRPQYHGWYVALWLFAPAAIFLAVWSSVSPALITNQVLASE
AAQGLPSFGFERGAILSDARDVAQGRAADVRLPAAEPLVKPYADASRKYAWIGIAAMLALALAGGLYAFTRIKPDFRART
RVERIVMLVLLLASLVAILTTFGIVLSLLFESIRFFRLVSPAELLFGTTWAPQSGAPQPDTFGGIPLFWGTVLIGAIIAM
IVAIPIGMMTAVYLTQYAAPAVRRWVKPILEILAGVPTVVYGYFAALTVAPALRNFAVMLGIPNASTESALAAGIVMGVM
IIPFVSSMADDSINAVPQAMRDGSLALGATPNETIRQVLIPAALPGVMGGILLAVSRAIGETMIVVMAAGLSANLTANPF
ASVTTVTAQIVKLLTGDQEFDSAKTLAAFALGLVLFIVTLLLNIAALRIVKKYREAYE
>Mature_457_residues
TFNAAALLLLIAGLALIGWLAGRARSNLLAGRAGTKLHSRPQYHGWYVALWLFAPAAIFLAVWSSVSPALITNQVLASEA
AQGLPSFGFERGAILSDARDVAQGRAADVRLPAAEPLVKPYADASRKYAWIGIAAMLALALAGGLYAFTRIKPDFRARTR
VERIVMLVLLLASLVAILTTFGIVLSLLFESIRFFRLVSPAELLFGTTWAPQSGAPQPDTFGGIPLFWGTVLIGAIIAMI
VAIPIGMMTAVYLTQYAAPAVRRWVKPILEILAGVPTVVYGYFAALTVAPALRNFAVMLGIPNASTESALAAGIVMGVMI
IPFVSSMADDSINAVPQAMRDGSLALGATPNETIRQVLIPAALPGVMGGILLAVSRAIGETMIVVMAAGLSANLTANPFA
SVTTVTAQIVKLLTGDQEFDSAKTLAAFALGLVLFIVTLLLNIAALRIVKKYREAYE

Specific function: Part of the binding-protein-dependent transport system yqgGHIJK. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0573

COG function: function code P; ABC-type phosphate transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1790164, Length=312, Percent_Identity=30.1282051282051, Blast_Score=112, Evalue=7e-26,
Organism=Escherichia coli, GI1790163, Length=253, Percent_Identity=24.5059288537549, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515
- InterPro:   IPR011864 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 48404; Mature: 48273

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFNAAALLLLIAGLALIGWLAGRARSNLLAGRAGTKLHSRPQYHGWYVALWLFAPAAIF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LAVWSSVSPALITNQVLASEAAQGLPSFGFERGAILSDARDVAQGRAADVRLPAAEPLVK
HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHH
PYADASRKYAWIGIAAMLALALAGGLYAFTRIKPDFRARTRVERIVMLVLLLASLVAILT
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TFGIVLSLLFESIRFFRLVSPAELLFGTTWAPQSGAPQPDTFGGIPLFWGTVLIGAIIAM
HHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
IVAIPIGMMTAVYLTQYAAPAVRRWVKPILEILAGVPTVVYGYFAALTVAPALRNFAVML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEE
GIPNASTESALAAGIVMGVMIIPFVSSMADDSINAVPQAMRDGSLALGATPNETIRQVLI
ECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHH
PAALPGVMGGILLAVSRAIGETMIVVMAAGLSANLTANPFASVTTVTAQIVKLLTGDQEF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHH
DSAKTLAAFALGLVLFIVTLLLNIAALRIVKKYREAYE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TFNAAALLLLIAGLALIGWLAGRARSNLLAGRAGTKLHSRPQYHGWYVALWLFAPAAIF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LAVWSSVSPALITNQVLASEAAQGLPSFGFERGAILSDARDVAQGRAADVRLPAAEPLVK
HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHH
PYADASRKYAWIGIAAMLALALAGGLYAFTRIKPDFRARTRVERIVMLVLLLASLVAILT
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TFGIVLSLLFESIRFFRLVSPAELLFGTTWAPQSGAPQPDTFGGIPLFWGTVLIGAIIAM
HHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
IVAIPIGMMTAVYLTQYAAPAVRRWVKPILEILAGVPTVVYGYFAALTVAPALRNFAVML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEE
GIPNASTESALAAGIVMGVMIIPFVSSMADDSINAVPQAMRDGSLALGATPNETIRQVLI
ECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHH
PAALPGVMGGILLAVSRAIGETMIVVMAAGLSANLTANPFASVTTVTAQIVKLLTGDQEF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHH
DSAKTLAAFALGLVLFIVTLLLNIAALRIVKKYREAYE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; phosphate [Periplasm]; H2O [C]

Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8760913; 8969508; 9384377 [H]