| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yqgI [H]
Identifier: 103486314
GI number: 103486314
Start: 827135
End: 828391
Strand: Reverse
Name: yqgI [H]
Synonym: Sala_0824
Alternate gene names: 103486314
Gene position: 828391-827135 (Counterclockwise)
Preceding gene: 103486315
Following gene: 103486313
Centisome position: 24.76
GC content: 65.16
Gene sequence:
>1257_bases ATGAATAGAGACACCGCCCCGACCGACTGGAAAGCCGCGGCGATGCAGAAACGCATCGCGGGCCGCTATGCCGCCGAACG CCGGTTCAAGGCGATCGGGCTGGCGGCGGTGCTGCTGTCGGGCGCGTTCCTGGCGTTTCTGCTGTTCGTGATGGTCGGCA ACGGCGCGCGCGGCTTTACCTATACGCATGTTTCGGTGCCGATCGACTTCAAGGCGACGCCGCTCACAATCGACGCATCG CGGCTGGACGATCCCGACGCCGACCAGCTGATCGCAGGCGCGGGGCTGGCCGATATCGTCGCCTTTGCCGCCGACGAGGC GCTGGGCGAGGACGGGTCGAAGCTGATCTCCGAAAACGCCTGGAAAGAGGTGCGCAGCGCGATCAAGGCCGACCCCGAGC TGCTGAACGGCAAAAGCGTGTTCGAACTGCCCGCGGCGTCCGAAGTCGACATCATGGCGAAGGAAGGCGCGCGCGGCGAA CTGGGCGCGCGGGTCGACGCGCTGGAAAGGGACGGCAGGCTGTCGACCGGCATCCACTGGCCCTTCTTCAGGAACGCCGA TGCGACCGACCCCGCGGTCGCGGGCATCTGGGGCGCGCTCAAGGGATCGGTGCTGACGATCTTCATCGCCTTCCTGATTG CTTTCCCGACCGGGGTGCTCGCGGCGCTCTATCTGGAAGAATATGCACCCAAGAACCGGTGGACCGACCTCATCGAAGTG TCGATCAACAATCTGGCCGCGGTGCCCTCGATCATCTTTGGCCTGCTCGCGCTCGCGGTGTTCATCAACTGGTTCGGCAT CTGTCAGGCGAGCCCGCTCGTCGGCGGGCTGACGCTCGCGCTGATGACGATGCCGGTGATCGTGATCGCCAGCCGCAACG CGATCAAATCGGTGCCGCCGTCGATCCGCGATGCCGCGCTGGGCGTCGGCGCCAGTCCGGTGCAGGTCGTGTTCCACCAC GTCCTGCCGCTTGCCCTCCCCGGCATCCTCACCGGCACGATCATCGGCATGGCGCGCGCGCTGGGCGAGACGGCGCCGCT GCTGCTCATCGGGATGCGCGCCTTTATCGGCGACGTGCCGGGCGGCATCTGTTCGCCCTCGACCGTGCTGCCGATGCAGA TATTCCTCTGGTCGGACGAAGTCGATCGCGGCTTTGTCGAGAAAACCTCCGCCGCGATCATCGTGCTGCTGATTGTCCTG CTGTCGATGAACGCCTTTGCGATCTATCTTCGCAACAAGTTCGAAAAACGCTGGTGA
Upstream 100 bases:
>100_bases AAGACGCTCGCCGCCTTTGCGCTTGGCCTTGTGCTGTTCATCGTCACCCTGCTGCTCAACATCGCCGCGCTGCGGATCGT GAAAAAGTATCGCGAAGCTT
Downstream 100 bases:
>100_bases AAATGACCCCCCAACCATGACAAACGACGATCTTACCATCACCGATCCCAAGATGCGGGCGCAGGGCGTCAACGTCTTTT ATGGCGACAAACAGGCGATC
Product: phosphate ABC transporter permease
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 418; Mature: 418
Protein sequence:
>418_residues MNRDTAPTDWKAAAMQKRIAGRYAAERRFKAIGLAAVLLSGAFLAFLLFVMVGNGARGFTYTHVSVPIDFKATPLTIDAS RLDDPDADQLIAGAGLADIVAFAADEALGEDGSKLISENAWKEVRSAIKADPELLNGKSVFELPAASEVDIMAKEGARGE LGARVDALERDGRLSTGIHWPFFRNADATDPAVAGIWGALKGSVLTIFIAFLIAFPTGVLAALYLEEYAPKNRWTDLIEV SINNLAAVPSIIFGLLALAVFINWFGICQASPLVGGLTLALMTMPVIVIASRNAIKSVPPSIRDAALGVGASPVQVVFHH VLPLALPGILTGTIIGMARALGETAPLLLIGMRAFIGDVPGGICSPSTVLPMQIFLWSDEVDRGFVEKTSAAIIVLLIVL LSMNAFAIYLRNKFEKRW
Sequences:
>Translated_418_residues MNRDTAPTDWKAAAMQKRIAGRYAAERRFKAIGLAAVLLSGAFLAFLLFVMVGNGARGFTYTHVSVPIDFKATPLTIDAS RLDDPDADQLIAGAGLADIVAFAADEALGEDGSKLISENAWKEVRSAIKADPELLNGKSVFELPAASEVDIMAKEGARGE LGARVDALERDGRLSTGIHWPFFRNADATDPAVAGIWGALKGSVLTIFIAFLIAFPTGVLAALYLEEYAPKNRWTDLIEV SINNLAAVPSIIFGLLALAVFINWFGICQASPLVGGLTLALMTMPVIVIASRNAIKSVPPSIRDAALGVGASPVQVVFHH VLPLALPGILTGTIIGMARALGETAPLLLIGMRAFIGDVPGGICSPSTVLPMQIFLWSDEVDRGFVEKTSAAIIVLLIVL LSMNAFAIYLRNKFEKRW >Mature_418_residues MNRDTAPTDWKAAAMQKRIAGRYAAERRFKAIGLAAVLLSGAFLAFLLFVMVGNGARGFTYTHVSVPIDFKATPLTIDAS RLDDPDADQLIAGAGLADIVAFAADEALGEDGSKLISENAWKEVRSAIKADPELLNGKSVFELPAASEVDIMAKEGARGE LGARVDALERDGRLSTGIHWPFFRNADATDPAVAGIWGALKGSVLTIFIAFLIAFPTGVLAALYLEEYAPKNRWTDLIEV SINNLAAVPSIIFGLLALAVFINWFGICQASPLVGGLTLALMTMPVIVIASRNAIKSVPPSIRDAALGVGASPVQVVFHH VLPLALPGILTGTIIGMARALGETAPLLLIGMRAFIGDVPGGICSPSTVLPMQIFLWSDEVDRGFVEKTSAAIIVLLIVL LSMNAFAIYLRNKFEKRW
Specific function: Part of the binding-protein-dependent transport system yqgGHIJK. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0581
COG function: function code P; ABC-type phosphate transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1790163, Length=224, Percent_Identity=30.3571428571429, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1790164, Length=177, Percent_Identity=32.2033898305085, Blast_Score=80, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 - InterPro: IPR005672 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 44552; Mature: 44552
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRDTAPTDWKAAAMQKRIAGRYAAERRFKAIGLAAVLLSGAFLAFLLFVMVGNGARGFT CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE YTHVSVPIDFKATPLTIDASRLDDPDADQLIAGAGLADIVAFAADEALGEDGSKLISENA EEEEEEEECCCCCCEEEEHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHH WKEVRSAIKADPELLNGKSVFELPAASEVDIMAKEGARGELGARVDALERDGRLSTGIHW HHHHHHHHCCCHHHCCCCCEEECCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCCC PFFRNADATDPAVAGIWGALKGSVLTIFIAFLIAFPTGVLAALYLEEYAPKNRWTDLIEV CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH SINNLAAVPSIIFGLLALAVFINWFGICQASPLVGGLTLALMTMPVIVIASRNAIKSVPP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCHHHHCCC SIRDAALGVGASPVQVVFHHVLPLALPGILTGTIIGMARALGETAPLLLIGMRAFIGDVP CHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC GGICSPSTVLPMQIFLWSDEVDRGFVEKTSAAIIVLLIVLLSMNAFAIYLRNKFEKRW CCCCCCCCCCCEEEEEECCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNRDTAPTDWKAAAMQKRIAGRYAAERRFKAIGLAAVLLSGAFLAFLLFVMVGNGARGFT CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE YTHVSVPIDFKATPLTIDASRLDDPDADQLIAGAGLADIVAFAADEALGEDGSKLISENA EEEEEEEECCCCCCEEEEHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHH WKEVRSAIKADPELLNGKSVFELPAASEVDIMAKEGARGELGARVDALERDGRLSTGIHW HHHHHHHHCCCHHHCCCCCEEECCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCCC PFFRNADATDPAVAGIWGALKGSVLTIFIAFLIAFPTGVLAALYLEEYAPKNRWTDLIEV CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH SINNLAAVPSIIFGLLALAVFINWFGICQASPLVGGLTLALMTMPVIVIASRNAIKSVPP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCHHHHCCC SIRDAALGVGASPVQVVFHHVLPLALPGILTGTIIGMARALGETAPLLLIGMRAFIGDVP CHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC GGICSPSTVLPMQIFLWSDEVDRGFVEKTSAAIIVLLIVLLSMNAFAIYLRNKFEKRW CCCCCCCCCCCEEEEEECCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8760913; 8969508; 9384377 [H]