| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is pstS [H]
Identifier: 103486316
GI number: 103486316
Start: 830073
End: 831134
Strand: Reverse
Name: pstS [H]
Synonym: Sala_0826
Alternate gene names: 103486316
Gene position: 831134-830073 (Counterclockwise)
Preceding gene: 103486317
Following gene: 103486315
Centisome position: 24.85
GC content: 63.94
Gene sequence:
>1062_bases ATGTTCAAGACATTCGCTCCCAAGATGCTTGGCGTCGCTGGCGCCGCGACGTGCGCGCTGGCGCTTTCCGCGTGCCAGGA TCAGGCGTCTTCGGGTGGCGGCGCGCGCGATTATATCAGCGCGGTCGGCTCCTCCACCGTCTATCCCTTTGCCACCGCGG TCGGCGAGAAGTTCGCCGAAGCGACGGGCAACAAGACGCCGAAGATCGATTCGACCGGCACCGGCGGCGGGTTCGAGCGG TTCTGCGCCGGCGTCGGCGGCGACACGCCCGACATCGCGAACGCATCGCGCCGCATCAAGAAAAAGGAGTTCGACACCTG CGTCGCCAATGGCGTGAAGGACATCGTCGAAATCCAGATCGGCATCGACGGCATCGCGCTGGGCGAAGCGACACGCGGCC CCGGTTTCAAGCTGACCGAAGAAGATGTCTATAAGGCGCTCGCCGCCAACCCCTATGGCAAGCCGAACACCGCGAAGACG TGGAAAGACGTCAACCCCGCGCTGCCCGCGGTCGCGATCTCGGTCTTTGGTCCGCCGTCGACCAGCGGCACCTATGATGC GTTCAAGGAGCTGATCCTGGGCCGCGGATGCGACGCGAACCCCGAAATGAAGGCGCTGAAGGCCAGCAACGCCGACGAAC ATGAAGCGACCTGCACCACGCTGCGCGGTTCGCCCTATTATGTCGAGCAGGGCGAGAATGATAACCTCATCATCTCGAAG CTCGACAAGAACCCGACCAGCCTTGGCATCTTCGGCTTTTCCTATCTCGATGCGAACAAGGACAAGATCAAGGCGGTGCC GATCCAGGGCGTCGCGCCCACTTACGCGGCGATCGCCGATGGCAGCTACCCCGGTTCGCGCCCGCTGTTCATCTATGTGA AGAAGGCGCATGTCGGCGTTGTCCCCGGCCTCGCCGAATATGTCGCCGAGTTCCTGAAGGGCGCGGCCGACGGCGGGTAT CTGAACGCCAAGGGGCTGATCGTGTCGCCCAAGGCCATCGCCGACAAGGCGCGCGCCGCGGGCACCGCGATGACCCCGCT GGATGGCAGCGAGCTGAAATAA
Upstream 100 bases:
>100_bases CCTGTCACAAACACGTCACACAAAACCCCCATTGGGCGCTCAGCGAGTCGCCGCGGGGGTGGCGGCTTGGTTCGGTAACG ACCCCCGACAGGACTTTTTC
Downstream 100 bases:
>100_bases GGTTGCTCATGCAGGCGGCCGGGGCGGGTCTGTCCGGTCCGGCCGCCGGTTTTACTCTTTCCCTCCCTTCTCCCGTTCGG GACCATTCAATCCCGCTCGC
Product: phosphate binding protein, putative
Products: NA
Alternate protein names: PBP [H]
Number of amino acids: Translated: 353; Mature: 353
Protein sequence:
>353_residues MFKTFAPKMLGVAGAATCALALSACQDQASSGGGARDYISAVGSSTVYPFATAVGEKFAEATGNKTPKIDSTGTGGGFER FCAGVGGDTPDIANASRRIKKKEFDTCVANGVKDIVEIQIGIDGIALGEATRGPGFKLTEEDVYKALAANPYGKPNTAKT WKDVNPALPAVAISVFGPPSTSGTYDAFKELILGRGCDANPEMKALKASNADEHEATCTTLRGSPYYVEQGENDNLIISK LDKNPTSLGIFGFSYLDANKDKIKAVPIQGVAPTYAAIADGSYPGSRPLFIYVKKAHVGVVPGLAEYVAEFLKGAADGGY LNAKGLIVSPKAIADKARAAGTAMTPLDGSELK
Sequences:
>Translated_353_residues MFKTFAPKMLGVAGAATCALALSACQDQASSGGGARDYISAVGSSTVYPFATAVGEKFAEATGNKTPKIDSTGTGGGFER FCAGVGGDTPDIANASRRIKKKEFDTCVANGVKDIVEIQIGIDGIALGEATRGPGFKLTEEDVYKALAANPYGKPNTAKT WKDVNPALPAVAISVFGPPSTSGTYDAFKELILGRGCDANPEMKALKASNADEHEATCTTLRGSPYYVEQGENDNLIISK LDKNPTSLGIFGFSYLDANKDKIKAVPIQGVAPTYAAIADGSYPGSRPLFIYVKKAHVGVVPGLAEYVAEFLKGAADGGY LNAKGLIVSPKAIADKARAAGTAMTPLDGSELK >Mature_353_residues MFKTFAPKMLGVAGAATCALALSACQDQASSGGGARDYISAVGSSTVYPFATAVGEKFAEATGNKTPKIDSTGTGGGFER FCAGVGGDTPDIANASRRIKKKEFDTCVANGVKDIVEIQIGIDGIALGEATRGPGFKLTEEDVYKALAANPYGKPNTAKT WKDVNPALPAVAISVFGPPSTSGTYDAFKELILGRGCDANPEMKALKASNADEHEATCTTLRGSPYYVEQGENDNLIISK LDKNPTSLGIFGFSYLDANKDKIKAVPIQGVAPTYAAIADGSYPGSRPLFIYVKKAHVGVVPGLAEYVAEFLKGAADGGY LNAKGLIVSPKAIADKARAAGTAMTPLDGSELK
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011862 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36568; Mature: 36568
Theoretical pI: Translated: 7.21; Mature: 7.21
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKTFAPKMLGVAGAATCALALSACQDQASSGGGARDYISAVGSSTVYPFATAVGEKFAE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH ATGNKTPKIDSTGTGGGFERFCAGVGGDTPDIANASRRIKKKEFDTCVANGVKDIVEIQI HCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEE GIDGIALGEATRGPGFKLTEEDVYKALAANPYGKPNTAKTWKDVNPALPAVAISVFGPPS CCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC TSGTYDAFKELILGRGCDANPEMKALKASNADEHEATCTTLRGSPYYVEQGENDNLIISK CCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCEEEECCCCCCEEEEE LDKNPTSLGIFGFSYLDANKDKIKAVPIQGVAPTYAAIADGSYPGSRPLFIYVKKAHVGV CCCCCCEEEEEEEEEECCCCCCEEEECCCCCCCCHHHEECCCCCCCCCEEEEEEECCCCC VPGLAEYVAEFLKGAADGGYLNAKGLIVSPKAIADKARAAGTAMTPLDGSELK CCCHHHHHHHHHHCCCCCCEEECCCEEECCHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MFKTFAPKMLGVAGAATCALALSACQDQASSGGGARDYISAVGSSTVYPFATAVGEKFAE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH ATGNKTPKIDSTGTGGGFERFCAGVGGDTPDIANASRRIKKKEFDTCVANGVKDIVEIQI HCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEE GIDGIALGEATRGPGFKLTEEDVYKALAANPYGKPNTAKTWKDVNPALPAVAISVFGPPS CCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC TSGTYDAFKELILGRGCDANPEMKALKASNADEHEATCTTLRGSPYYVEQGENDNLIISK CCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCEEEECCCCCCEEEEE LDKNPTSLGIFGFSYLDANKDKIKAVPIQGVAPTYAAIADGSYPGSRPLFIYVKKAHVGV CCCCCCEEEEEEEEEECCCCCCEEEECCCCCCCCHHHEECCCCCCCCCEEEEEEECCCCC VPGLAEYVAEFLKGAADGGYLNAKGLIVSPKAIADKARAAGTAMTPLDGSELK CCCHHHHHHHHHHCCCCCCEEECCCEEECCHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA