| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is ybaB [C]
Identifier: 103486289
GI number: 103486289
Start: 803368
End: 803703
Strand: Direct
Name: ybaB [C]
Synonym: Sala_0797
Alternate gene names: 103486289
Gene position: 803368-803703 (Clockwise)
Preceding gene: 103486288
Following gene: 103486290
Centisome position: 24.02
GC content: 64.29
Gene sequence:
>336_bases ATGAAATCCATCGAAGAAATGATGAAGGCGGCGCAGGAAGCCGCCGCCGCCGTGCAGGCACAGATGCAGGAGGCGCAGGC GAGGCTCGACAGCGTCGAGGTCGAAGGCGTCTCGGGCGGCGGCCTTGTGAAGATCAAGGCGACCGCCAAGGGTCGGATCA AGGCGATCCACATCGACGACAGCCTGATCGTCCCCGCCGACAAGCAGATGCTTGAGGATCTGCTCGCCGCCGCGTTCAAC GACGCGCGCGAAAAGGCCGACGCGGCGAGCAATGAGGAAATGGGCAAGATGACGAGCGGCCTGCCGCTTCCGCCGGGGTT CAAGCTCCCGTTCTGA
Upstream 100 bases:
>100_bases AGGCACGCATTCGCGAACTGCCCGTCGTGAAGGCCGCGCTGGCGGCCTTTCCCGACGCGCGGCTTGTCGAAGGCGACAAT AATCAGCATAGGTCGAACCC
Downstream 100 bases:
>100_bases GATAAATGCTTCTCCCCGTCGCGTGGCGATGGCGCGGGCGACCGCCGACGCAGGCGGTGGTCGAGAGGGGCAGCGACGTC TGCGCCGTCGCCCCTCCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 111; Mature: 111
Protein sequence:
>111_residues MKSIEEMMKAAQEAAAAVQAQMQEAQARLDSVEVEGVSGGGLVKIKATAKGRIKAIHIDDSLIVPADKQMLEDLLAAAFN DAREKADAASNEEMGKMTSGLPLPPGFKLPF
Sequences:
>Translated_111_residues MKSIEEMMKAAQEAAAAVQAQMQEAQARLDSVEVEGVSGGGLVKIKATAKGRIKAIHIDDSLIVPADKQMLEDLLAAAFN DAREKADAASNEEMGKMTSGLPLPPGFKLPF >Mature_111_residues MKSIEEMMKAAQEAAAAVQAQMQEAQARLDSVEVEGVSGGGLVKIKATAKGRIKAIHIDDSLIVPADKQMLEDLLAAAFN DAREKADAASNEEMGKMTSGLPLPPGFKLPF
Specific function: Unknown
COG id: COG0718
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0133 family [H]
Homologues:
Organism=Escherichia coli, GI1786677, Length=105, Percent_Identity=44.7619047619048, Blast_Score=88, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004401 [H]
Pfam domain/function: PF02575 DUF149 [H]
EC number: NA
Molecular weight: Translated: 11740; Mature: 11740
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 6.3 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 6.3 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSIEEMMKAAQEAAAAVQAQMQEAQARLDSVEVEGVSGGGLVKIKATAKGRIKAIHIDD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEEECCCCCEEEEEECC SLIVPADKQMLEDLLAAAFNDAREKADAASNEEMGKMTSGLPLPPGFKLPF CEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MKSIEEMMKAAQEAAAAVQAQMQEAQARLDSVEVEGVSGGGLVKIKATAKGRIKAIHIDD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEEECCCCCEEEEEECC SLIVPADKQMLEDLLAAAFNDAREKADAASNEEMGKMTSGLPLPPGFKLPF CEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA