| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486285
Identifier: 103486285
GI number: 103486285
Start: 799193
End: 799849
Strand: Reverse
Name: 103486285
Synonym: Sala_0793
Alternate gene names: NA
Gene position: 799849-799193 (Counterclockwise)
Preceding gene: 103486295
Following gene: 103486284
Centisome position: 23.91
GC content: 65.6
Gene sequence:
>657_bases ATGCCCGACGTCATTTTCCCCGGCCCCGAGGGCCGCATCGAAGGCCGTTTCTCGCCCCCGCCGCGTCCGCGCGCGCCGGT TGCGCTGATCCTCCACCCGCACCCGCAGGGCGGCGGCACGATGAACGACCGCATCACGCAGGCGATGTACAAGAGCTTCG TCGCGCGCGGTTTCGCGGTGCTACGCTTCAACTTTCGCGGCGTCGGCCGCAGTCAGGGCACCTTCGACAATGGTATCGGC GAACTGTCCGATGCCGCATCGGCGCTCGACTGGGTGCAGTCGATCCATCCCGAGGCGCAAACCACCTGGGTGGCGGGGTT CAGCTTCGGCGCCTGGATCGGGATGCAATTGCTGATGCGCCGCCCCGAAATCCGCGGCTTCCTCTCGGTCGCGCCGCCGG CGAATATGTACGACTTCAGCTTCCTCGCCCCCTGCCCGTCATCGGGGATCATCGTCGCGGGCGGGCAGGACGAGATCGTG CCGCCGTCCGCGGTGCAGAAGCTGGTCGACAAGCTGCGCACGCAAAAGGGCATCACCATCCATCACGACGAAATCCCGCG CGCCAACCATTTCTTCGAGCATGAGCTCGATCAGCTGATGAAGTCGCTCGACAATTATCTGGACATGCGGCTCGCGCCCG ATTCGCCGATCCGGTGA
Upstream 100 bases:
>100_bases GCAAGTTGCGACCTTTTTTCTATATAGGCGCGTGTCTTCGCTCCGCCACCCCGCCCCATGGCGAATCACTGGCAAGCCCC GATACATGGAAGGTGCTTTG
Downstream 100 bases:
>100_bases CATCACCGTCGTTGCGGGCGGAGCGAAGCAATCTCCGGCTATCGGCCAGGGTCGACGCCGGCTGGAGATTGCCGCGTCGC CTTCGGCTCCTCGCAATGAC
Product: hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 218; Mature: 217
Protein sequence:
>218_residues MPDVIFPGPEGRIEGRFSPPPRPRAPVALILHPHPQGGGTMNDRITQAMYKSFVARGFAVLRFNFRGVGRSQGTFDNGIG ELSDAASALDWVQSIHPEAQTTWVAGFSFGAWIGMQLLMRRPEIRGFLSVAPPANMYDFSFLAPCPSSGIIVAGGQDEIV PPSAVQKLVDKLRTQKGITIHHDEIPRANHFFEHELDQLMKSLDNYLDMRLAPDSPIR
Sequences:
>Translated_218_residues MPDVIFPGPEGRIEGRFSPPPRPRAPVALILHPHPQGGGTMNDRITQAMYKSFVARGFAVLRFNFRGVGRSQGTFDNGIG ELSDAASALDWVQSIHPEAQTTWVAGFSFGAWIGMQLLMRRPEIRGFLSVAPPANMYDFSFLAPCPSSGIIVAGGQDEIV PPSAVQKLVDKLRTQKGITIHHDEIPRANHFFEHELDQLMKSLDNYLDMRLAPDSPIR >Mature_217_residues PDVIFPGPEGRIEGRFSPPPRPRAPVALILHPHPQGGGTMNDRITQAMYKSFVARGFAVLRFNFRGVGRSQGTFDNGIGE LSDAASALDWVQSIHPEAQTTWVAGFSFGAWIGMQLLMRRPEIRGFLSVAPPANMYDFSFLAPCPSSGIIVAGGQDEIVP PSAVQKLVDKLRTQKGITIHHDEIPRANHFFEHELDQLMKSLDNYLDMRLAPDSPIR
Specific function: Unknown
COG id: COG2945
COG function: function code R; Predicted hydrolase of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000383 [H]
Pfam domain/function: PF02129 Peptidase_S15 [H]
EC number: NA
Molecular weight: Translated: 24088; Mature: 23957
Theoretical pI: Translated: 7.24; Mature: 7.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDVIFPGPEGRIEGRFSPPPRPRAPVALILHPHPQGGGTMNDRITQAMYKSFVARGFAV CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCEEE LRFNFRGVGRSQGTFDNGIGELSDAASALDWVQSIHPEAQTTWVAGFSFGAWIGMQLLMR EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH RPEIRGFLSVAPPANMYDFSFLAPCPSSGIIVAGGQDEIVPPSAVQKLVDKLRTQKGITI CCCCCEEEEECCCCCCCCCEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEE HHDEIPRANHFFEHELDQLMKSLDNYLDMRLAPDSPIR ECCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCC >Mature Secondary Structure PDVIFPGPEGRIEGRFSPPPRPRAPVALILHPHPQGGGTMNDRITQAMYKSFVARGFAV CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCEEE LRFNFRGVGRSQGTFDNGIGELSDAASALDWVQSIHPEAQTTWVAGFSFGAWIGMQLLMR EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH RPEIRGFLSVAPPANMYDFSFLAPCPSSGIIVAGGQDEIVPPSAVQKLVDKLRTQKGITI CCCCCEEEEECCCCCCCCCEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEE HHDEIPRANHFFEHELDQLMKSLDNYLDMRLAPDSPIR ECCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]