Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486285

Identifier: 103486285

GI number: 103486285

Start: 799193

End: 799849

Strand: Reverse

Name: 103486285

Synonym: Sala_0793

Alternate gene names: NA

Gene position: 799849-799193 (Counterclockwise)

Preceding gene: 103486295

Following gene: 103486284

Centisome position: 23.91

GC content: 65.6

Gene sequence:

>657_bases
ATGCCCGACGTCATTTTCCCCGGCCCCGAGGGCCGCATCGAAGGCCGTTTCTCGCCCCCGCCGCGTCCGCGCGCGCCGGT
TGCGCTGATCCTCCACCCGCACCCGCAGGGCGGCGGCACGATGAACGACCGCATCACGCAGGCGATGTACAAGAGCTTCG
TCGCGCGCGGTTTCGCGGTGCTACGCTTCAACTTTCGCGGCGTCGGCCGCAGTCAGGGCACCTTCGACAATGGTATCGGC
GAACTGTCCGATGCCGCATCGGCGCTCGACTGGGTGCAGTCGATCCATCCCGAGGCGCAAACCACCTGGGTGGCGGGGTT
CAGCTTCGGCGCCTGGATCGGGATGCAATTGCTGATGCGCCGCCCCGAAATCCGCGGCTTCCTCTCGGTCGCGCCGCCGG
CGAATATGTACGACTTCAGCTTCCTCGCCCCCTGCCCGTCATCGGGGATCATCGTCGCGGGCGGGCAGGACGAGATCGTG
CCGCCGTCCGCGGTGCAGAAGCTGGTCGACAAGCTGCGCACGCAAAAGGGCATCACCATCCATCACGACGAAATCCCGCG
CGCCAACCATTTCTTCGAGCATGAGCTCGATCAGCTGATGAAGTCGCTCGACAATTATCTGGACATGCGGCTCGCGCCCG
ATTCGCCGATCCGGTGA

Upstream 100 bases:

>100_bases
GCAAGTTGCGACCTTTTTTCTATATAGGCGCGTGTCTTCGCTCCGCCACCCCGCCCCATGGCGAATCACTGGCAAGCCCC
GATACATGGAAGGTGCTTTG

Downstream 100 bases:

>100_bases
CATCACCGTCGTTGCGGGCGGAGCGAAGCAATCTCCGGCTATCGGCCAGGGTCGACGCCGGCTGGAGATTGCCGCGTCGC
CTTCGGCTCCTCGCAATGAC

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MPDVIFPGPEGRIEGRFSPPPRPRAPVALILHPHPQGGGTMNDRITQAMYKSFVARGFAVLRFNFRGVGRSQGTFDNGIG
ELSDAASALDWVQSIHPEAQTTWVAGFSFGAWIGMQLLMRRPEIRGFLSVAPPANMYDFSFLAPCPSSGIIVAGGQDEIV
PPSAVQKLVDKLRTQKGITIHHDEIPRANHFFEHELDQLMKSLDNYLDMRLAPDSPIR

Sequences:

>Translated_218_residues
MPDVIFPGPEGRIEGRFSPPPRPRAPVALILHPHPQGGGTMNDRITQAMYKSFVARGFAVLRFNFRGVGRSQGTFDNGIG
ELSDAASALDWVQSIHPEAQTTWVAGFSFGAWIGMQLLMRRPEIRGFLSVAPPANMYDFSFLAPCPSSGIIVAGGQDEIV
PPSAVQKLVDKLRTQKGITIHHDEIPRANHFFEHELDQLMKSLDNYLDMRLAPDSPIR
>Mature_217_residues
PDVIFPGPEGRIEGRFSPPPRPRAPVALILHPHPQGGGTMNDRITQAMYKSFVARGFAVLRFNFRGVGRSQGTFDNGIGE
LSDAASALDWVQSIHPEAQTTWVAGFSFGAWIGMQLLMRRPEIRGFLSVAPPANMYDFSFLAPCPSSGIIVAGGQDEIVP
PSAVQKLVDKLRTQKGITIHHDEIPRANHFFEHELDQLMKSLDNYLDMRLAPDSPIR

Specific function: Unknown

COG id: COG2945

COG function: function code R; Predicted hydrolase of the alpha/beta superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000383 [H]

Pfam domain/function: PF02129 Peptidase_S15 [H]

EC number: NA

Molecular weight: Translated: 24088; Mature: 23957

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDVIFPGPEGRIEGRFSPPPRPRAPVALILHPHPQGGGTMNDRITQAMYKSFVARGFAV
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCEEE
LRFNFRGVGRSQGTFDNGIGELSDAASALDWVQSIHPEAQTTWVAGFSFGAWIGMQLLMR
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH
RPEIRGFLSVAPPANMYDFSFLAPCPSSGIIVAGGQDEIVPPSAVQKLVDKLRTQKGITI
CCCCCEEEEECCCCCCCCCEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEE
HHDEIPRANHFFEHELDQLMKSLDNYLDMRLAPDSPIR
ECCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCC
>Mature Secondary Structure 
PDVIFPGPEGRIEGRFSPPPRPRAPVALILHPHPQGGGTMNDRITQAMYKSFVARGFAV
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCEEE
LRFNFRGVGRSQGTFDNGIGELSDAASALDWVQSIHPEAQTTWVAGFSFGAWIGMQLLMR
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH
RPEIRGFLSVAPPANMYDFSFLAPCPSSGIIVAGGQDEIVPPSAVQKLVDKLRTQKGITI
CCCCCEEEEECCCCCCCCCEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEE
HHDEIPRANHFFEHELDQLMKSLDNYLDMRLAPDSPIR
ECCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]