| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486295
Identifier: 103486295
GI number: 103486295
Start: 809791
End: 810300
Strand: Reverse
Name: 103486295
Synonym: Sala_0803
Alternate gene names: NA
Gene position: 810300-809791 (Counterclockwise)
Preceding gene: 103486297
Following gene: 103486285
Centisome position: 24.22
GC content: 60.59
Gene sequence:
>510_bases ATGGTCTTCATCGACGAGACCTGGGCCAAGACCAACATGACCCGTACCCATGGCTGGGGCACGAAGGGCGAGCCGCTGAT CGACAAGGTGCCGCATGGACACTGGAAGACGCTCACCTTTATCGCTGGTCTCAGGCACGACGGGATCGTCGCCCCCTGCG TGCTCGACGGGCCGATCAACGGGACAAGCTTCACCGCCCGGGTCGAGCAGTTCCTGATCCCCGAACTGGAACCAGGCAGC ATCGTCGTCCTCGACAATCTCGGCAGCCACAAAGGCAGCCGCGTGCGCAAACTGCTCCGGGCGGCGGGCATCAAGATGTT CTTCCTGCCACCTTACTCGCCCGACCTCGATCCGATCGAGAAGATGTTCTCCAAACTCAAGCGCCTGCTGCGAAAAGCCA ACGAACGAACCGTCGAGCCCACTTGGCGGCGCATCGGCAAACTGCTCGACCGCTTCCCTCCAAACGAATGTGCCAACTAC ATCAGAGACGCCGGATATGCCTCAATCTAA
Upstream 100 bases:
>100_bases TTTAAAAAAGACGCTCTTCGCCAAGGAGCAAGACCGCCCCGATGTTGTCCGCCGCCGCGCCCGCTGGCGCTGGGTTCAGC GCTGGGTAAACCCCCGGCGC
Downstream 100 bases:
>100_bases CTCAGAAAGACTCTAGCCGCAGTTGAGAGGGGGTTGGGATGGTCCCCCTCTCCCAACCCTCTCCCCTGAAGGGGAGACGG CTATGGCAGCTCCCCACCCC
Product: putative ISRm2011-2 transposase protein
Products: NA
Alternate protein names: Transposase Of Insertion Sequence; Transposase And Inactivated Derivatives-Like Protein; ISSpo6 Transposase OrfB; LOW QUALITY PROTEIN Transposase; Insertion Sequence Transposase Protein; Transposase For Insertion Sequence Element; Transposase Family Protein; Transposase IS; ISRin2 Transposase OrfB; ISSoc4 Transposase OrfAB; Transposase And Inactivated Derivative; Transposase Fragment
Number of amino acids: Translated: 169; Mature: 169
Protein sequence:
>169_residues MVFIDETWAKTNMTRTHGWGTKGEPLIDKVPHGHWKTLTFIAGLRHDGIVAPCVLDGPINGTSFTARVEQFLIPELEPGS IVVLDNLGSHKGSRVRKLLRAAGIKMFFLPPYSPDLDPIEKMFSKLKRLLRKANERTVEPTWRRIGKLLDRFPPNECANY IRDAGYASI
Sequences:
>Translated_169_residues MVFIDETWAKTNMTRTHGWGTKGEPLIDKVPHGHWKTLTFIAGLRHDGIVAPCVLDGPINGTSFTARVEQFLIPELEPGS IVVLDNLGSHKGSRVRKLLRAAGIKMFFLPPYSPDLDPIEKMFSKLKRLLRKANERTVEPTWRRIGKLLDRFPPNECANY IRDAGYASI >Mature_169_residues MVFIDETWAKTNMTRTHGWGTKGEPLIDKVPHGHWKTLTFIAGLRHDGIVAPCVLDGPINGTSFTARVEQFLIPELEPGS IVVLDNLGSHKGSRVRKLLRAAGIKMFFLPPYSPDLDPIEKMFSKLKRLLRKANERTVEPTWRRIGKLLDRFPPNECANY IRDAGYASI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19093; Mature: 19093
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVFIDETWAKTNMTRTHGWGTKGEPLIDKVPHGHWKTLTFIAGLRHDGIVAPCVLDGPIN CEEECCCHHHCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCEEECEEECCCCC GTSFTARVEQFLIPELEPGSIVVLDNLGSHKGSRVRKLLRAAGIKMFFLPPYSPDLDPIE CCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHH KMFSKLKRLLRKANERTVEPTWRRIGKLLDRFPPNECANYIRDAGYASI HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC >Mature Secondary Structure MVFIDETWAKTNMTRTHGWGTKGEPLIDKVPHGHWKTLTFIAGLRHDGIVAPCVLDGPIN CEEECCCHHHCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCEEECEEECCCCC GTSFTARVEQFLIPELEPGSIVVLDNLGSHKGSRVRKLLRAAGIKMFFLPPYSPDLDPIE CCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHH KMFSKLKRLLRKANERTVEPTWRRIGKLLDRFPPNECANYIRDAGYASI HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA