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The map label for this gene is abnA [H]

Identifier: 103486229

GI number: 103486229

Start: 741811

End: 742848

Strand: Reverse

Name: abnA [H]

Synonym: Sala_0737

Alternate gene names: 103486229

Gene position: 742848-741811 (Counterclockwise)

Preceding gene: 103486230

Following gene: 103486227

Centisome position: 22.21

GC content: 58.19

Gene sequence:

>1038_bases
ATGAGGGCAGAAAAATCGGCATTATTTCTCGCGCTCATGGTGCTGGGCGGCTGTGCAACGGCGCCTGGGAGGCCGACTAT
AAGCAATCCTGTCATCGACGAAAATTTTCCCGATCCGGCCGTGCTCAAAGCGCCCGACGGCTATTATTATGCCTACGCCA
CCCAGGGCGAAGTCGGGGGGCGCATGCAGAATATTCAGGTGGCGCGTTCGCGCACCCTCGCGCAATGGGAGCGGGTCGGC
GATGCGTTGCCGGTGAAGCCGAAGTGGGCAAGCCGGACTCAAGATTTTTGGGCGCCCCACGTCTCGCTGCATGATGGCCG
TTATTATCTTTACTACTCGGCGAAACCCGACGCTGCGCTGGTCGACGGCAAAAGCGGATTGTGTCTCGCGGTAGCAACGG
CGAGCAGGCCGGAGGGGCCATTTACCGACATCGGCAATCCGCTGCAGTGCGGCGAAGGTTTCATCAATATCGATCCGATG
GCCTATGATGATCCGGCGACCGGCAAGCGCCTGCTTTATTGGGGATCGGGGTTCGCGCCCATCAAGGTCCAGGAGTTGGC
CGTTGATCGCATGTCTTTCGCGCAAGGGAGCAAGCCGACAGAGTTGGTCCGCGTCATCCCGGATGCAAGCAAGGAGAATT
ACCAGCGCCTCGTCGAGGGGGCCTGGGTGACGAAGTATGGCGATTATTATTATATGTTCTACTCGGGCGATAATTGCTGT
GGTCCGGACGCTCATTATGCGGTCATGGTCGCGCGCTCGGCGAGCGCAACAGGCCCATTCGAGACGCTTGCGCACGCGAC
GGGAACGCCGAACAGCGTGATTGTGGAAGCGGACAGTCGCTGGATTGCTCCGGGTCATAACGCGATCGTTCAAGATGATG
AGGATCGCTATTGGATATTGTTTCACGCCGTCGATGTCAGGAAATCGCGCGAAAAAGACAGCGATGCCGTCAATTCGCGT
CGGGTGATGCTTGTCGAGGAAATCGAATGGGTCGATGGCTGGCCACGTATCAAGCGGGCGAGCAATGAAGAAGAGTGA

Upstream 100 bases:

>100_bases
ATGCGCCCAACCAGCCTGGCTTCGGCTCAATAGCACTTCAACCCGGCCAAACCTATTCCAACATGATTATCTGGCGATTT
GAATTGTCGGAGGAGCGATC

Downstream 100 bases:

>100_bases
CGCAGCTTCGCATTGCCGCGCATGCTCTGTTGCCAATGCGCGGACATCAAGATTTGTCATGGTTACCCCTTGCATCTCGA
TGGGTGTCCGGGGCCACCGG

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Endo-1,5-alpha-L-arabinanase; ABN; Endo-arabinanase [H]

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MRAEKSALFLALMVLGGCATAPGRPTISNPVIDENFPDPAVLKAPDGYYYAYATQGEVGGRMQNIQVARSRTLAQWERVG
DALPVKPKWASRTQDFWAPHVSLHDGRYYLYYSAKPDAALVDGKSGLCLAVATASRPEGPFTDIGNPLQCGEGFINIDPM
AYDDPATGKRLLYWGSGFAPIKVQELAVDRMSFAQGSKPTELVRVIPDASKENYQRLVEGAWVTKYGDYYYMFYSGDNCC
GPDAHYAVMVARSASATGPFETLAHATGTPNSVIVEADSRWIAPGHNAIVQDDEDRYWILFHAVDVRKSREKDSDAVNSR
RVMLVEEIEWVDGWPRIKRASNEEE

Sequences:

>Translated_345_residues
MRAEKSALFLALMVLGGCATAPGRPTISNPVIDENFPDPAVLKAPDGYYYAYATQGEVGGRMQNIQVARSRTLAQWERVG
DALPVKPKWASRTQDFWAPHVSLHDGRYYLYYSAKPDAALVDGKSGLCLAVATASRPEGPFTDIGNPLQCGEGFINIDPM
AYDDPATGKRLLYWGSGFAPIKVQELAVDRMSFAQGSKPTELVRVIPDASKENYQRLVEGAWVTKYGDYYYMFYSGDNCC
GPDAHYAVMVARSASATGPFETLAHATGTPNSVIVEADSRWIAPGHNAIVQDDEDRYWILFHAVDVRKSREKDSDAVNSR
RVMLVEEIEWVDGWPRIKRASNEEE
>Mature_345_residues
MRAEKSALFLALMVLGGCATAPGRPTISNPVIDENFPDPAVLKAPDGYYYAYATQGEVGGRMQNIQVARSRTLAQWERVG
DALPVKPKWASRTQDFWAPHVSLHDGRYYLYYSAKPDAALVDGKSGLCLAVATASRPEGPFTDIGNPLQCGEGFINIDPM
AYDDPATGKRLLYWGSGFAPIKVQELAVDRMSFAQGSKPTELVRVIPDASKENYQRLVEGAWVTKYGDYYYMFYSGDNCC
GPDAHYAVMVARSASATGPFETLAHATGTPNSVIVEADSRWIAPGHNAIVQDDEDRYWILFHAVDVRKSREKDSDAVNSR
RVMLVEEIEWVDGWPRIKRASNEEE

Specific function: Catalyzes the hydrolysis of the alpha-1,5-linked L- arabinofuranoside backbone. Its preferred substrate is linear 1,5- alpha-L-arabinan. It is also active towards branched sugar beet arabinan, but inactive towards larch wood arabinogalactan, wheat arabino

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006710
- InterPro:   IPR016840 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.99 [H]

Molecular weight: Translated: 38216; Mature: 38216

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAEKSALFLALMVLGGCATAPGRPTISNPVIDENFPDPAVLKAPDGYYYAYATQGEVGG
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCC
RMQNIQVARSRTLAQWERVGDALPVKPKWASRTQDFWAPHVSLHDGRYYLYYSAKPDAAL
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCEEEECCEEEEEEECCCCCEE
VDGKSGLCLAVATASRPEGPFTDIGNPLQCGEGFINIDPMAYDDPATGKRLLYWGSGFAP
EECCCCCEEEEEECCCCCCCHHHCCCHHHHCCCEEEECCCCCCCCCCCCEEEEECCCCCC
IKVQELAVDRMSFAQGSKPTELVRVIPDASKENYQRLVEGAWVTKYGDYYYMFYSGDNCC
EEEHHHHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHHHCCEEEEECCEEEEEECCCCCC
GPDAHYAVMVARSASATGPFETLAHATGTPNSVIVEADSRWIAPGHNAIVQDDEDRYWIL
CCCCCEEEEEEECCCCCCCHHHHHHCCCCCCEEEEECCCEEECCCCCCEEECCCCCEEEE
FHAVDVRKSREKDSDAVNSRRVMLVEEIEWVDGWPRIKRASNEEE
EEEEECHHHCCCCCHHHCCCEEEEEEEECCCCCCHHHHCCCCCCC
>Mature Secondary Structure
MRAEKSALFLALMVLGGCATAPGRPTISNPVIDENFPDPAVLKAPDGYYYAYATQGEVGG
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCC
RMQNIQVARSRTLAQWERVGDALPVKPKWASRTQDFWAPHVSLHDGRYYLYYSAKPDAAL
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCEEEECCEEEEEEECCCCCEE
VDGKSGLCLAVATASRPEGPFTDIGNPLQCGEGFINIDPMAYDDPATGKRLLYWGSGFAP
EECCCCCEEEEEECCCCCCCHHHCCCHHHHCCCEEEECCCCCCCCCCCCEEEEECCCCCC
IKVQELAVDRMSFAQGSKPTELVRVIPDASKENYQRLVEGAWVTKYGDYYYMFYSGDNCC
EEEHHHHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHHHCCEEEEECCEEEEEECCCCCC
GPDAHYAVMVARSASATGPFETLAHATGTPNSVIVEADSRWIAPGHNAIVQDDEDRYWIL
CCCCCEEEEEEECCCCCCCHHHHHHCCCCCCEEEEECCCEEECCCCCCEEECCCCCEEEE
FHAVDVRKSREKDSDAVNSRRVMLVEEIEWVDGWPRIKRASNEEE
EEEEECHHHCCCCCHHHCCCEEEEEEEECCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]