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The map label for this gene is yxaF [H]

Identifier: 103486227

GI number: 103486227

Start: 740222

End: 740860

Strand: Reverse

Name: yxaF [H]

Synonym: Sala_0735

Alternate gene names: 103486227

Gene position: 740860-740222 (Counterclockwise)

Preceding gene: 103486229

Following gene: 103486226

Centisome position: 22.15

GC content: 62.44

Gene sequence:

>639_bases
ATGGTCGGCGGGCGAGATCAGAGGAACGAGCAAATGGCCGCCAAGCTTAAACACAGGCAACCGATAATCGATGCCGCAGT
GCAGCTATTTCGCCAACGCGGATATGCCGCTACCGGTCTGAACGATCTGGTATTGGCGAGCGGCTCGCCCAAGGGTTCGA
TGTATTACTATTTCCCCGATGGCAAGCCGACGATTGCGGCCGCCGCGGTGGAAGAAGCCGGGCGCCGGGTGATGGAGACG
ATCGAGGACATCGCCGCCAGGACCGGCTCAACCGCCGATCTGCTGGTCGAGCATGCACGACTGCTTGGCCAATGGATGGA
AAAGTCCGGCTTCCGCGATGGCTGCCCGATGACAACCGTCCTGCTGGAACTGGCACCGGACGACCGCATCGTGACCGAAG
CTGGCCGCCGTGCCTTTGCCGCCCGCTTGCGGATTCTGGGGGACAAGCTGATCGAAGACGGCTTCGAGGCGAGGGAGGCG
GAGGCGATGGCGCTCCTCTGCACAAATGCTTTGCAAGGAAGCCTCGTGATGGCGCGGGTCGAATGCAGCCGCGCACCGAT
CGAGCAGACCGCCGCCCAACTGGCCGCGATCCTCAAGGTCAAAAGCGAAGCACGCCGCTCTAACGCCATTCAGGACTGA

Upstream 100 bases:

>100_bases
CCACTCCTTCGAGAGGCTGTCTTCCTGAGACTATTAAATAGACCAGTCAATATAATTTTTGGAACCCGAGGCTTGACGGA
TGCCGGGTTGAGGGTCACGC

Downstream 100 bases:

>100_bases
ACGGTCGAACGGAAGTTGCAACGCGCCACCTTCATCGCGCTCTAAGGGGTCAAACGGAACGCCGGTGATGCCGGGCGATT
GCTGAAGCGGAAGATGAAAA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MVGGRDQRNEQMAAKLKHRQPIIDAAVQLFRQRGYAATGLNDLVLASGSPKGSMYYYFPDGKPTIAAAAVEEAGRRVMET
IEDIAARTGSTADLLVEHARLLGQWMEKSGFRDGCPMTTVLLELAPDDRIVTEAGRRAFAARLRILGDKLIEDGFEAREA
EAMALLCTNALQGSLVMARVECSRAPIEQTAAQLAAILKVKSEARRSNAIQD

Sequences:

>Translated_212_residues
MVGGRDQRNEQMAAKLKHRQPIIDAAVQLFRQRGYAATGLNDLVLASGSPKGSMYYYFPDGKPTIAAAAVEEAGRRVMET
IEDIAARTGSTADLLVEHARLLGQWMEKSGFRDGCPMTTVLLELAPDDRIVTEAGRRAFAARLRILGDKLIEDGFEAREA
EAMALLCTNALQGSLVMARVECSRAPIEQTAAQLAAILKVKSEARRSNAIQD
>Mature_212_residues
MVGGRDQRNEQMAAKLKHRQPIIDAAVQLFRQRGYAATGLNDLVLASGSPKGSMYYYFPDGKPTIAAAAVEEAGRRVMET
IEDIAARTGSTADLLVEHARLLGQWMEKSGFRDGCPMTTVLLELAPDDRIVTEAGRRAFAARLRILGDKLIEDGFEAREA
EAMALLCTNALQGSLVMARVECSRAPIEQTAAQLAAILKVKSEARRSNAIQD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23076; Mature: 23076

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGGRDQRNEQMAAKLKHRQPIIDAAVQLFRQRGYAATGLNDLVLASGSPKGSMYYYFPD
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEECCC
GKPTIAAAAVEEAGRRVMETIEDIAARTGSTADLLVEHARLLGQWMEKSGFRDGCPMTTV
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
LLELAPDDRIVTEAGRRAFAARLRILGDKLIEDGFEAREAEAMALLCTNALQGSLVMARV
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHH
ECSRAPIEQTAAQLAAILKVKSEARRSNAIQD
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVGGRDQRNEQMAAKLKHRQPIIDAAVQLFRQRGYAATGLNDLVLASGSPKGSMYYYFPD
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEECCC
GKPTIAAAAVEEAGRRVMETIEDIAARTGSTADLLVEHARLLGQWMEKSGFRDGCPMTTV
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
LLELAPDDRIVTEAGRRAFAARLRILGDKLIEDGFEAREAEAMALLCTNALQGSLVMARV
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHH
ECSRAPIEQTAAQLAAILKVKSEARRSNAIQD
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]