| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is yceG [H]
Identifier: 103485941
GI number: 103485941
Start: 458901
End: 459839
Strand: Reverse
Name: yceG [H]
Synonym: Sala_0448
Alternate gene names: 103485941
Gene position: 459839-458901 (Counterclockwise)
Preceding gene: 103485944
Following gene: 103485940
Centisome position: 13.75
GC content: 64.43
Gene sequence:
>939_bases GTGCATCCGTTCCGCTGGCTAAGGATCGCAATCCTGACTTTGGCGCTCGCCGCCTGCTCGCCCGGCGCGCCGAAAGATGC CGAGGTTGTCATCCCCAAAGGTGCCAGCATCGCCAGGGCCGGCGAGATTCTCGAGGAGGCCGGCCTCGTTTCGGCGTCGA GTTTTCGTAATCAGGCCCGCTTCTTCGGATCGGACGAGCCGATCAAGCCCGGCGAATATAAAATCGAAAAGGGGATGGAT GCGGGCGATATCCTGAAGCTGCTCCAGTCGGGCAAGACGATCCAGCGCCTGGTAACGATTCCGGAGGGCATGCCCTCGAT CATGGTCTGGGAACGACTGATGGCAGAGGAGCGGCTGACGGGTGAAATCCCTGTGCCTGCCGAGGGCAGTGTCCTGCCCG ACTCCTATGCTTTCACCACCGGCGAAAGCCGGGCGGCCGTGGTCGCGCGGATGCAGGCGGCGATGGACAGGGTCTTCGCC GAACTCTGGGCGAAGCGCAGCCCGCGCACGGCGGTCAGAAACCGCAATGAGGCGATCACGCTCGCCTCGATCGTCGAAAA GGAAACCGCCGTTCCTGCCGAGCGCCGCACCGTCGCGGGCGTCTATACCAACCGCCTCGCCGTGGGGATGCGGCTTCAGG CCGATCCGACGATCATCTATCCGATCACCAGGGGCAAGCCGCTCGGCCGTCGCATCCTGCGCTCCGAAATCCAGGCGGTG AACGACTATAACACCTATGCGATGGCGGGGCTGCCCAGGGGGCCGATCGCCAACCCCGGCAGGGCGTCGATTGCGGCGGT GCTCGACCCCGAAGCGAACGACTATCTCTTCTTCGTCGCGCGTGGCGACGGCAGCCACGTCTTCGCGCGCACGCTCGCCG AGCATAACGCCAATGTGCAGAAATGGTATGCGCTCCGCCGCGAACGGGGAGAGATGTAA
Upstream 100 bases:
>100_bases ATGTCGATTGACCATAAAGCCACAAAGGACACAAACAGGCGCCGCGCAGGCGGCTCTTTTGCGGCTTCAAGCGGAGCCGT ACGACTGACGGGAGATAGAT
Downstream 100 bases:
>100_bases GGCGCAACACAGAAAGCAGAGGGAGAATCATGATACGGACCGTCTCGATCACCCTGGCTCTGGTCATCGGACTTGCCGGC TGCGCGGCGAACGGGGAGGA
Product: aminodeoxychorismate lyase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 312
Protein sequence:
>312_residues MHPFRWLRIAILTLALAACSPGAPKDAEVVIPKGASIARAGEILEEAGLVSASSFRNQARFFGSDEPIKPGEYKIEKGMD AGDILKLLQSGKTIQRLVTIPEGMPSIMVWERLMAEERLTGEIPVPAEGSVLPDSYAFTTGESRAAVVARMQAAMDRVFA ELWAKRSPRTAVRNRNEAITLASIVEKETAVPAERRTVAGVYTNRLAVGMRLQADPTIIYPITRGKPLGRRILRSEIQAV NDYNTYAMAGLPRGPIANPGRASIAAVLDPEANDYLFFVARGDGSHVFARTLAEHNANVQKWYALRRERGEM
Sequences:
>Translated_312_residues MHPFRWLRIAILTLALAACSPGAPKDAEVVIPKGASIARAGEILEEAGLVSASSFRNQARFFGSDEPIKPGEYKIEKGMD AGDILKLLQSGKTIQRLVTIPEGMPSIMVWERLMAEERLTGEIPVPAEGSVLPDSYAFTTGESRAAVVARMQAAMDRVFA ELWAKRSPRTAVRNRNEAITLASIVEKETAVPAERRTVAGVYTNRLAVGMRLQADPTIIYPITRGKPLGRRILRSEIQAV NDYNTYAMAGLPRGPIANPGRASIAAVLDPEANDYLFFVARGDGSHVFARTLAEHNANVQKWYALRRERGEM >Mature_312_residues MHPFRWLRIAILTLALAACSPGAPKDAEVVIPKGASIARAGEILEEAGLVSASSFRNQARFFGSDEPIKPGEYKIEKGMD AGDILKLLQSGKTIQRLVTIPEGMPSIMVWERLMAEERLTGEIPVPAEGSVLPDSYAFTTGESRAAVVARMQAAMDRVFA ELWAKRSPRTAVRNRNEAITLASIVEKETAVPAERRTVAGVYTNRLAVGMRLQADPTIIYPITRGKPLGRRILRSEIQAV NDYNTYAMAGLPRGPIANPGRASIAAVLDPEANDYLFFVARGDGSHVFARTLAEHNANVQKWYALRRERGEM
Specific function: Unknown
COG id: COG1559
COG function: function code R; Predicted periplasmic solute-binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0755 family [H]
Homologues:
Organism=Escherichia coli, GI1787339, Length=262, Percent_Identity=35.1145038167939, Blast_Score=159, Evalue=2e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003770 [H]
Pfam domain/function: PF02618 ADC_lyase [H]
EC number: NA
Molecular weight: Translated: 34184; Mature: 34184
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHPFRWLRIAILTLALAACSPGAPKDAEVVIPKGASIARAGEILEEAGLVSASSFRNQAR CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHH FFGSDEPIKPGEYKIEKGMDAGDILKLLQSGKTIQRLVTIPEGMPSIMVWERLMAEERLT HCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCC GEIPVPAEGSVLPDSYAFTTGESRAAVVARMQAAMDRVFAELWAKRSPRTAVRNRNEAIT CCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEH LASIVEKETAVPAERRTVAGVYTNRLAVGMRLQADPTIIYPITRGKPLGRRILRSEIQAV HHHHHHHHHCCCHHHHEEHHHHHHHEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHH NDYNTYAMAGLPRGPIANPGRASIAAVLDPEANDYLFFVARGDGSHVFARTLAEHNANVQ CCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHCCCHH KWYALRRERGEM HHHHHHHHHCCC >Mature Secondary Structure MHPFRWLRIAILTLALAACSPGAPKDAEVVIPKGASIARAGEILEEAGLVSASSFRNQAR CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHH FFGSDEPIKPGEYKIEKGMDAGDILKLLQSGKTIQRLVTIPEGMPSIMVWERLMAEERLT HCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCC GEIPVPAEGSVLPDSYAFTTGESRAAVVARMQAAMDRVFAELWAKRSPRTAVRNRNEAIT CCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEH LASIVEKETAVPAERRTVAGVYTNRLAVGMRLQADPTIIYPITRGKPLGRRILRSEIQAV HHHHHHHHHCCCHHHHEEHHHHHHHEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHH NDYNTYAMAGLPRGPIANPGRASIAAVLDPEANDYLFFVARGDGSHVFARTLAEHNANVQ CCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHCCCHH KWYALRRERGEM HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 1644759; 8631667 [H]