| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103485940
Identifier: 103485940
GI number: 103485940
Start: 457723
End: 458871
Strand: Reverse
Name: 103485940
Synonym: Sala_0447
Alternate gene names: NA
Gene position: 458871-457723 (Counterclockwise)
Preceding gene: 103485941
Following gene: 103485939
Centisome position: 13.72
GC content: 70.67
Gene sequence:
>1149_bases ATGATACGGACCGTCTCGATCACCCTGGCTCTGGTCATCGGACTTGCCGGCTGCGCGGCGAACGGGGAGGATGCGGCCGG TCTGCAAGCCGCCGACCTTCGCTTCGAGGACGGGCCGCGCCTCGGCGCGCCGCGGGCTGCCCATCAACTGATCGCGACCG CGGACGGCAAGCTGCTGGCCATTGGCGGATGTGTGCGCTCGGGGTGCGACGTCGGCCCCGCCAGCGCAACCGTCGACATC ATCGATGCGGCAAGCATGGCGCTGATCGGCAGTGGCCGCCTGCTCGCCGCGCATGTCCAGCCATCGGCCGTCGCGCTGCG CGACGGCCGGGTGCTGATCACGGGCGGCTGGATCGACGGGCGCCCGGCCACGGCGATCGAGATATTCAACCCCGCAACGG GCAGGTCGGTCGCGGGACCGGCGCTCGGCGGACCCCGCGCCAATCCCGCCGTCGTGGGGCTTGCCGACGGACGCGTCCTG ATCGCCGGTGGTTATGACGGCCAGGATGCGCTCGGCGATGCGCTGATCTTCGATCCCGCCAGTGGAACGCTGTCGGCGAC GGGCAGGCTGGTCACGCCGCGCGCCGGGGCCAGCGCCACCCTGCTGTCCGATGGCCGGGTGCTGTTGGTTGGTGGCGGCC GTGCCGAACGGAGCCCCCGGATCGCGCTCGCGAGCGCGGAAATCTTCGATCCGGCCACGGGGCGATTCGAGGCGGCCGGG TCGCTGGCCCAGGGACGCTACAAGCATGGCGCGCTCCGGCTCGACAATGGCGACGTGCTGATCGTCGGCGGCGCCACTGA ACGCGATTCCGCCGGGAAACTGCGTTCGGTCGAACGGTTCGACGCGGCCACGGGCCGCTTCGTGGTTGCGGGGCAATTGC TCGCCGGACGCTACAAGCTGGCCGATGCCCTGCTGCTACTGCCGGGCAACCGCGTGCTCGTGGCGGCGGACGACATGGCG CCCGAGATTTTCGATGTCGCGCGCGGCCGGAGCAGCCGGGTCGATTACGATCTGGGCGAGCGCTGGAACTTCATGGCGAT GGTCCGTGTCGATTCGCGGCGGGCCCTGCTCGCCGGCGGCTACAGCGAAAAGGGGATCGACCCGACCGATCGAAGCTGGG TCATCCATCTGCCCACGGGGGCGTCGTGA
Upstream 100 bases:
>100_bases GCACGCTCGCCGAGCATAACGCCAATGTGCAGAAATGGTATGCGCTCCGCCGCGAACGGGGAGAGATGTAAGGCGCAACA CAGAAAGCAGAGGGAGAATC
Downstream 100 bases:
>100_bases CGACCGCCAAGCTCTTTCTGCACGGTGTGCCCGACAGCCCGGCGATCTGGCGCCCTCTGCTCGCCGCGCTCGATCTCGGC GGCACGCCCGTCGCGGTTCC
Product: kelch
Products: NA
Alternate protein names: Kelch Domain-Containing Protein; Kelch Domain Protein; Lipoprotein; NHL Repeat Containing Protein; Transposase; Kelch Motif-Containing Protein; Kelch Repeat Type 1-Containing Protein; Ig Domain-Containing Domain-Containing Protein; Ig Domain Domain Protein; Kelch Related Protein
Number of amino acids: Translated: 382; Mature: 382
Protein sequence:
>382_residues MIRTVSITLALVIGLAGCAANGEDAAGLQAADLRFEDGPRLGAPRAAHQLIATADGKLLAIGGCVRSGCDVGPASATVDI IDAASMALIGSGRLLAAHVQPSAVALRDGRVLITGGWIDGRPATAIEIFNPATGRSVAGPALGGPRANPAVVGLADGRVL IAGGYDGQDALGDALIFDPASGTLSATGRLVTPRAGASATLLSDGRVLLVGGGRAERSPRIALASAEIFDPATGRFEAAG SLAQGRYKHGALRLDNGDVLIVGGATERDSAGKLRSVERFDAATGRFVVAGQLLAGRYKLADALLLLPGNRVLVAADDMA PEIFDVARGRSSRVDYDLGERWNFMAMVRVDSRRALLAGGYSEKGIDPTDRSWVIHLPTGAS
Sequences:
>Translated_382_residues MIRTVSITLALVIGLAGCAANGEDAAGLQAADLRFEDGPRLGAPRAAHQLIATADGKLLAIGGCVRSGCDVGPASATVDI IDAASMALIGSGRLLAAHVQPSAVALRDGRVLITGGWIDGRPATAIEIFNPATGRSVAGPALGGPRANPAVVGLADGRVL IAGGYDGQDALGDALIFDPASGTLSATGRLVTPRAGASATLLSDGRVLLVGGGRAERSPRIALASAEIFDPATGRFEAAG SLAQGRYKHGALRLDNGDVLIVGGATERDSAGKLRSVERFDAATGRFVVAGQLLAGRYKLADALLLLPGNRVLVAADDMA PEIFDVARGRSSRVDYDLGERWNFMAMVRVDSRRALLAGGYSEKGIDPTDRSWVIHLPTGAS >Mature_382_residues MIRTVSITLALVIGLAGCAANGEDAAGLQAADLRFEDGPRLGAPRAAHQLIATADGKLLAIGGCVRSGCDVGPASATVDI IDAASMALIGSGRLLAAHVQPSAVALRDGRVLITGGWIDGRPATAIEIFNPATGRSVAGPALGGPRANPAVVGLADGRVL IAGGYDGQDALGDALIFDPASGTLSATGRLVTPRAGASATLLSDGRVLLVGGGRAERSPRIALASAEIFDPATGRFEAAG SLAQGRYKHGALRLDNGDVLIVGGATERDSAGKLRSVERFDAATGRFVVAGQLLAGRYKLADALLLLPGNRVLVAADDMA PEIFDVARGRSSRVDYDLGERWNFMAMVRVDSRRALLAGGYSEKGIDPTDRSWVIHLPTGAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39056; Mature: 39056
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRTVSITLALVIGLAGCAANGEDAAGLQAADLRFEDGPRLGAPRAAHQLIATADGKLLA CEEEEEEHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHEEEECCCCEEE IGGCVRSGCDVGPASATVDIIDAASMALIGSGRLLAAHVQPSAVALRDGRVLITGGWIDG EECHHHCCCCCCCCCCEEEEECCCEEEEEECCCEEEEECCCCEEEEECCEEEEECCCCCC RPATAIEIFNPATGRSVAGPALGGPRANPAVVGLADGRVLIAGGYDGQDALGDALIFDPA CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCHHHCCCEEEEECC SGTLSATGRLVTPRAGASATLLSDGRVLLVGGGRAERSPRIALASAEIFDPATGRFEAAG CCCEECCCEEECCCCCCCEEEECCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCC SLAQGRYKHGALRLDNGDVLIVGGATERDSAGKLRSVERFDAATGRFVVAGQLLAGRYKL CHHCCCCCCCEEEECCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEHHHHCCEEE ADALLLLPGNRVLVAADDMAPEIFDVARGRSSRVDYDLGERWNFMAMVRVDSRRALLAGG EEEEEEECCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECC YSEKGIDPTDRSWVIHLPTGAS CCCCCCCCCCCCEEEECCCCCC >Mature Secondary Structure MIRTVSITLALVIGLAGCAANGEDAAGLQAADLRFEDGPRLGAPRAAHQLIATADGKLLA CEEEEEEHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHEEEECCCCEEE IGGCVRSGCDVGPASATVDIIDAASMALIGSGRLLAAHVQPSAVALRDGRVLITGGWIDG EECHHHCCCCCCCCCCEEEEECCCEEEEEECCCEEEEECCCCEEEEECCEEEEECCCCCC RPATAIEIFNPATGRSVAGPALGGPRANPAVVGLADGRVLIAGGYDGQDALGDALIFDPA CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCHHHCCCEEEEECC SGTLSATGRLVTPRAGASATLLSDGRVLLVGGGRAERSPRIALASAEIFDPATGRFEAAG CCCEECCCEEECCCCCCCEEEECCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCC SLAQGRYKHGALRLDNGDVLIVGGATERDSAGKLRSVERFDAATGRFVVAGQLLAGRYKL CHHCCCCCCCEEEECCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEHHHHCCEEE ADALLLLPGNRVLVAADDMAPEIFDVARGRSSRVDYDLGERWNFMAMVRVDSRRALLAGG EEEEEEECCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECC YSEKGIDPTDRSWVIHLPTGAS CCCCCCCCCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA