Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485678

Identifier: 103485678

GI number: 103485678

Start: 188026

End: 189534

Strand: Direct

Name: 103485678

Synonym: Sala_0182

Alternate gene names: NA

Gene position: 188026-189534 (Clockwise)

Preceding gene: 103485677

Following gene: 103485679

Centisome position: 5.62

GC content: 67.53

Gene sequence:

>1509_bases
ATGACCCCCATGCGGATCATCATCATCGGCGGCGGGACGGCAGGCTGGATGGCCGCCGCCTGCTTCACCCGCTTCCTGCC
TCCCGGCTGGTCGGTCACGCTGGTCGAATCGGACGCGATCGGCACCGTCGGCGTGGGCGAGGCGACGATCCCGCAGATCC
GCCTGTTCAATCAGGCGCTCGGCATCGACGAGGACGAGTTCCTCACCGCGACGCAGGGCACGATCAAGCTCGGCATCGAA
TTTGCGGACTGGACGCGCCCCGGCCACCGCTACATGCACGCCTTCGGCGCGATCGGGCGCGGGCTCGGCCTGCTCGAGTT
CCAGCATTACTGGCTGCGCGCGCGCGCCGCCGGGGTCGCGGGTGAGCTGGGCACCTATTCGCTCAACGAAACGGCCGCGC
ACGCGCGGCGGATGCAGCGCGGCGCCCCGCGCACCTCGCCGCACCTCGCCGAAATGCCCTATGCCTTTCACTTCGACGCC
GCGCTTTACGCTGCTTACCTGCGCCGCCGCGCCGAAGCGGGCGGTGCGCAGCGGGTCGAGGGCAAGGTCGCCGACGTTCG
CCTCGACGGCGACAGCGGCAATGTCGCGGGGGTGACGCTCGACGACGGGCGCCGCATCGACGGCGATCTCTTCATCGACT
GTTCGGGTTTTCGCGGCCTGCTGATCGAGGGCGCGCTGGCGACGGGTTATGACGACTGGTCGCGCTGGCTGATCAATGAT
CGCGCGATCGCGGTGCCCTGCGTGCACGGCGCCACGCCGCAGTTGCCGTGGACCGGCGCCACCGCGCGCGAGGCCGGCTG
GCAATGGCGCATCCCGCTCCAGCATCGCATCGGCAACGGCTATGTCTATTCGTCGCATCATATTTCGGACGAAGACGCCG
AACGGACGCTGCTTGCCCATCTCGACGGCGCGCCGCAGGCGCAGCCCAACCGGCTGCGCTTCGTCAGCGGCAAGCGGCGC
AAGCTGTGGAACCGCAACGTCGTCGCGCTGGGGCTGGCGAGCGGCTTCATGGAGCCGCTCGAATCGACGAGCATCCATCT
CGTCCAGTCGGGCATCTCGCGGCTTTTGAAGATGCTTCCTGTCGGCGTCGCCGACCCCGCGGTTGCCGCCGAATATAATC
GCCAGAGCGATTTTGAATGGGAACGCATCCGCGACTTCCTCATCCTGCACTTCAAGGCGACCGAGCGGCGCGACACGCGC
TATTGGCAAGACCGCGCCGCCATGCCGATTCCCGACACGCTCGCCGCGAAGATCGATCAGTTCCGCGCGCAGGGGCTTAT
CTTTCGCGAGCATGAGGAATTGTTCACCGAATCGGGCTGGCTGCAGGTGCTCATCGGGCAGGGGATCGAACCCCGCGCCT
GGCATCCCCTCGCCGACGGGATCGGTGAGGCCGAGCTCGCCAAATATATGGCGGGGATTTCGCTGATGATCGAACGCGAG
GTGGCAGTCATGCAAAGTTACGACGACTTCCTTGCCGCGACGCGGCCCGCCGCGGGGGTCGCGGCATGA

Upstream 100 bases:

>100_bases
CTGGCGGGCGCCTCGTTCAAGTTCTGATCCTCCCTGATGGGGGCGGCTGCGTCCAGCCGTCCCCATCATCTTGTTGCGTA
AAGAGGCATTGGCCGATCAA

Downstream 100 bases:

>100_bases
TGCGCCGCCTCGCCGCGTTCGCGCTGCTGCTCGCGCCGCTCCCCGTCGCGGCGGACGAGGCGGCGCTGCGCGTCCGCCCC
GCAAACGACGAGATCATCTA

Product: tryptophan halogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 501

Protein sequence:

>502_residues
MTPMRIIIIGGGTAGWMAAACFTRFLPPGWSVTLVESDAIGTVGVGEATIPQIRLFNQALGIDEDEFLTATQGTIKLGIE
FADWTRPGHRYMHAFGAIGRGLGLLEFQHYWLRARAAGVAGELGTYSLNETAAHARRMQRGAPRTSPHLAEMPYAFHFDA
ALYAAYLRRRAEAGGAQRVEGKVADVRLDGDSGNVAGVTLDDGRRIDGDLFIDCSGFRGLLIEGALATGYDDWSRWLIND
RAIAVPCVHGATPQLPWTGATAREAGWQWRIPLQHRIGNGYVYSSHHISDEDAERTLLAHLDGAPQAQPNRLRFVSGKRR
KLWNRNVVALGLASGFMEPLESTSIHLVQSGISRLLKMLPVGVADPAVAAEYNRQSDFEWERIRDFLILHFKATERRDTR
YWQDRAAMPIPDTLAAKIDQFRAQGLIFREHEELFTESGWLQVLIGQGIEPRAWHPLADGIGEAELAKYMAGISLMIERE
VAVMQSYDDFLAATRPAAGVAA

Sequences:

>Translated_502_residues
MTPMRIIIIGGGTAGWMAAACFTRFLPPGWSVTLVESDAIGTVGVGEATIPQIRLFNQALGIDEDEFLTATQGTIKLGIE
FADWTRPGHRYMHAFGAIGRGLGLLEFQHYWLRARAAGVAGELGTYSLNETAAHARRMQRGAPRTSPHLAEMPYAFHFDA
ALYAAYLRRRAEAGGAQRVEGKVADVRLDGDSGNVAGVTLDDGRRIDGDLFIDCSGFRGLLIEGALATGYDDWSRWLIND
RAIAVPCVHGATPQLPWTGATAREAGWQWRIPLQHRIGNGYVYSSHHISDEDAERTLLAHLDGAPQAQPNRLRFVSGKRR
KLWNRNVVALGLASGFMEPLESTSIHLVQSGISRLLKMLPVGVADPAVAAEYNRQSDFEWERIRDFLILHFKATERRDTR
YWQDRAAMPIPDTLAAKIDQFRAQGLIFREHEELFTESGWLQVLIGQGIEPRAWHPLADGIGEAELAKYMAGISLMIERE
VAVMQSYDDFLAATRPAAGVAA
>Mature_501_residues
TPMRIIIIGGGTAGWMAAACFTRFLPPGWSVTLVESDAIGTVGVGEATIPQIRLFNQALGIDEDEFLTATQGTIKLGIEF
ADWTRPGHRYMHAFGAIGRGLGLLEFQHYWLRARAAGVAGELGTYSLNETAAHARRMQRGAPRTSPHLAEMPYAFHFDAA
LYAAYLRRRAEAGGAQRVEGKVADVRLDGDSGNVAGVTLDDGRRIDGDLFIDCSGFRGLLIEGALATGYDDWSRWLINDR
AIAVPCVHGATPQLPWTGATAREAGWQWRIPLQHRIGNGYVYSSHHISDEDAERTLLAHLDGAPQAQPNRLRFVSGKRRK
LWNRNVVALGLASGFMEPLESTSIHLVQSGISRLLKMLPVGVADPAVAAEYNRQSDFEWERIRDFLILHFKATERRDTRY
WQDRAAMPIPDTLAAKIDQFRAQGLIFREHEELFTESGWLQVLIGQGIEPRAWHPLADGIGEAELAKYMAGISLMIEREV
AVMQSYDDFLAATRPAAGVAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006905 [H]

Pfam domain/function: PF04820 Trp_halogenase [H]

EC number: NA

Molecular weight: Translated: 55414; Mature: 55282

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPMRIIIIGGGTAGWMAAACFTRFLPPGWSVTLVESDAIGTVGVGEATIPQIRLFNQAL
CCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
GIDEDEFLTATQGTIKLGIEFADWTRPGHRYMHAFGAIGRGLGLLEFQHYWLRARAAGVA
CCCCHHEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
GELGTYSLNETAAHARRMQRGAPRTSPHLAEMPYAFHFDAALYAAYLRRRAEAGGAQRVE
CCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCCC
GKVADVRLDGDSGNVAGVTLDDGRRIDGDLFIDCSGFRGLLIEGALATGYDDWSRWLIND
CEEEEEEEECCCCCEEEEEECCCCEECCEEEEEECCCCCEEEECCHHCCCCHHHHHEECC
RAIAVPCVHGATPQLPWTGATAREAGWQWRIPLQHRIGNGYVYSSHHISDEDAERTLLAH
CEEEEEEECCCCCCCCCCCCCHHHCCCEEECCHHHCCCCCEEEECCCCCCCHHHHHHHHH
LDGAPQAQPNRLRFVSGKRRKLWNRNVVALGLASGFMEPLESTSIHLVQSGISRLLKMLP
CCCCCCCCCCCEEEECCCHHHHCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
VGVADPAVAAEYNRQSDFEWERIRDFLILHFKATERRDTRYWQDRAAMPIPDTLAAKIDQ
CCCCCCHHHHHCCCCCCCCHHHHCEEEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHH
FRAQGLIFREHEELFTESGWLQVLIGQGIEPRAWHPLADGIGEAELAKYMAGISLMIERE
HHHCCCEEECHHHHHCCCCCEEEEECCCCCCCCCCHHHHCCCHHHHHHHHHHHHEEEHHH
VAVMQSYDDFLAATRPAAGVAA
HHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TPMRIIIIGGGTAGWMAAACFTRFLPPGWSVTLVESDAIGTVGVGEATIPQIRLFNQAL
CCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
GIDEDEFLTATQGTIKLGIEFADWTRPGHRYMHAFGAIGRGLGLLEFQHYWLRARAAGVA
CCCCHHEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
GELGTYSLNETAAHARRMQRGAPRTSPHLAEMPYAFHFDAALYAAYLRRRAEAGGAQRVE
CCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCCC
GKVADVRLDGDSGNVAGVTLDDGRRIDGDLFIDCSGFRGLLIEGALATGYDDWSRWLIND
CEEEEEEEECCCCCEEEEEECCCCEECCEEEEEECCCCCEEEECCHHCCCCHHHHHEECC
RAIAVPCVHGATPQLPWTGATAREAGWQWRIPLQHRIGNGYVYSSHHISDEDAERTLLAH
CEEEEEEECCCCCCCCCCCCCHHHCCCEEECCHHHCCCCCEEEECCCCCCCHHHHHHHHH
LDGAPQAQPNRLRFVSGKRRKLWNRNVVALGLASGFMEPLESTSIHLVQSGISRLLKMLP
CCCCCCCCCCCEEEECCCHHHHCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
VGVADPAVAAEYNRQSDFEWERIRDFLILHFKATERRDTRYWQDRAAMPIPDTLAAKIDQ
CCCCCCHHHHHCCCCCCCCHHHHCEEEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHH
FRAQGLIFREHEELFTESGWLQVLIGQGIEPRAWHPLADGIGEAELAKYMAGISLMIERE
HHHCCCEEECHHHHHCCCCCEEEEECCCCCCCCCCHHHHCCCHHHHHHHHHHHHEEEHHH
VAVMQSYDDFLAATRPAAGVAA
HHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]