| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103485677
Identifier: 103485677
GI number: 103485677
Start: 185217
End: 187952
Strand: Direct
Name: 103485677
Synonym: Sala_0181
Alternate gene names: NA
Gene position: 185217-187952 (Clockwise)
Preceding gene: 103485676
Following gene: 103485678
Centisome position: 5.54
GC content: 63.12
Gene sequence:
>2736_bases ATGGCGCAGGATGCCGATCCCGCCGCCGAAGCGGGCGGCGAAGAAGAAATCGTCGTTTCGGGCTTCCGCGCCAGCCTCGA AAGCGCTGTCGGCGCCAAAAAGGAACGCGATCAGGTCGTCGAATCGATTTCGGCCGAAGACATCGGCAAGCTGCCCGATG CCTCGATCGCCGAATCGATCGCGCGCCTGCCGGGCCTGACGTCGCAGCGCGTCTCGGGCCGCTCGAACTCGATCTCGATC CGCGGCTTTGCGCCCGACTTTTCGACGACTTTGCTCAACGGCCGCGAACAGACCTCGACCGGCGACAACCGCGCGGTCGA ATATGACCAATATCCCAGCGAAGTGATCAACCAGGTCCTCGTCTACAAGACGCCGATGGCGTCGATCGTCGGGCAGGGGC TTTCGGGCACCGTCGACCTGCGCACCATCCGCCCGCTCGAATATGGCAAGAGCGTCATCTCGATCGGCGCGCGCGGCAGC CTCGCCGACCTCGGCAAGCTCAACGCGGGGTCGAAAAAATACGGCTACCGCGTCAACGGCGTGTTCGTCGACCAGTTCGC GAACGACACGATCGGCGTCGCGCTCTCGGCGAGCTATGTCGACGAGCCCTATCAGATTCAGGAGTTCAACGCCTGGGGCT ATGCGGGCGCCGGAACGGCGGCGAGCCCCGTGGTGATCGGCGGGTCGAAAAGCTACGCGACCTCGACCCAGCTCACCCGC CTCGGCCTCCAGGGCACGCTGCAATGGCAGCCGCACCCCAATTTCACCTCGACGCTCGATGCCTTTTATTCGGACTTCAA GGACGACCAGATCAAGCGCGGGATCGAACTGCCGCTCGCCTTCGGCGGCGCCGGGGTCAATGTCACCGACATCGACGAGA GCGGCGAGTTCGTCTTTGCCCGTGCCGGAACCTTCACCAATGTCGAGGGCGTCGTGCGCAACGACGTGTTCGAGCGCAAG GCCAAGCTTTACAGCTTCGGATGGAACAACCGCTGGGAAGGCGACGATGGCTGGAACGTCACCGCCGACGTCAGCCTGTC GAAGACCGACCGCAACGAGCTGATCTTTGAAAGCAATGCCGGCACTGGCCGCGGCGGCGGCGTCGGCGCGGTCGACACGA TCGGTTTCCGTAGTGACCGTAATGGCACGGTGTTCAGCCCGACGCTCAACTATGGTGACTATGACCTCATCCAGCTCACC AGCCCGCTCGGCTGGGGCGGCGATCAGACGAGCGTTGACGGCCGCCGCATCCTTGGCGGGCAGGACGGTTATTACAACAA CCGCATCATTGAGGACGAGCTGTGGCAATATCGCGTCGAGGTCGAACGCGAACTCGAAGGCTTTTTCCGCTCGGTCCAGT TCGGCGTCAACTACACCGATCGCTCGAAAAGCCTCGTCCCCGACGAAGCCTTTGTCGGGCTCGTCGCCAACACCGACGGG TTGACCAGCGTGCCGGTGCCCGAACAGTTCCGCCTCGGCACCACCGACCTCGAATATCTCGGCCTCGGTCCCGTCATCAG CTACGATCCGCGCGACCTGCTTGCGGCCGGGCTCTACCAGTTGGTACCGAACCCCTATGGCGATGTGGTCGTCAAGGCCT ATGATGTCTCCGAAAAGCTGATGACCACCTATGTTCAGGCGAATATCGACCATGAAATGGGCTCGTCGCTGCTCACGGGC AACATCGGCGTCCAGGCGATCTTCACCGACCAGAACTCGAACGGCGCGAGCGCGTCCTTCATCGGCACCAATCCCAATGG ATCGCCCAACATCCAGGGCATCCCGCAGCGTCGCAGCACCGACTATGTCGATGTGCTGCCCAGCCTCAACCTGTCGCTGC GCACGGCGGGCGATTTCGTGATCCGGTTCAGCGCGGCGCGCGAGATCATCCGCCCGCGCCTCGACGACATGCGCGCTTCG CTGAGCTATGGCACCACCGTCGGCGATCCGGGCGGCATGACCTGCCCAGCCGGACGGCTGTGCGCTGTCGTACGCGGCGA TGCGGGCAATCCCGATCTCCGACCGTGGCGCGCCAACGCTGTCGATCTGACCTTCGAAAAATATTTCGGGTCAAAGGGTT ATCTGGCGTTGCAACTCTTCTACAAGGATCTGAAGAGCTATATCTATAATCAGGCGATCCCCTTCGACTTCACCGGCTAT CCGATCGCGCCGGTTGGTAATGACTCGAACGGCAACCCGATCATCGTCAACTTTATGGGCACGGTGAACGCCCCGATCAA CGGCGAGGGCGGCGAGCTCTACGGCGCCGAAGTCGCGGGCACCTTGCCCTTCGGCGAGATTGTCGGCGCGCTCGACGGCT TCGGTGTGACCGGCGGCGCTTCCTATACCAAGACGAAGATTGCGCCGACCCCCGGTGCGCCCGCGGAGGATATCCCCGGC TATTCGAAATGGGTCGCGAACGGCACCATCTTCTTCGAAAAATGGGGATTCAACGCCCGTGCCAGCGCACGTTACCGGTC GAGCTTCGTCGGCGAGCTGTCGGGCTTCGGTGGCAATCGTGTGCGCCGCCGCGCGCGGCCGGAAACGATCATCGACGCGC AGATCGGCTATGATTTCCAGCCGGGCAGCGCGCTCGAAGGCCTGTCGATCTTCGTGCAGGGCCAGAATCTGACCGACGAA CCCTTCGTCACCGACGATCCGCGCGACGCGCGTGCGGTCATCGACTATCAGGTCTATGGTCGCCGCTTCCTGGCGGGCGC CTCGTTCAAGTTCTGA
Upstream 100 bases:
>100_bases GCCAGGGGAGCCTTTTATGACCATGCCGACCAGCCTTCGTCGCGGCGCCAGCGCCATCGCGATGGGCCTTGCCTTGACCG CCGTCCTGCCTGCCGCCGCG
Downstream 100 bases:
>100_bases TCCTCCCTGATGGGGGCGGCTGCGTCCAGCCGTCCCCATCATCTTGTTGCGTAAAGAGGCATTGGCCGATCAAATGACCC CCATGCGGATCATCATCATC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Nb-Dependent Receptor; NB-Dependent Receptor Subfamily; NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Nb-Dependent Outer Membrane Receptor Protein; NB-Dependent Receptor Subfamily Protein; Outer Membrane Insertion C-Terminal Signal; NB Dependent Receptor-Related Protein; NB-Dependent Receptor-Like Protein; NB-Dependent Receptor Protein; Nucleoside Diphosphate Kinase; Crossover Junction Endodeoxyribonuclease RuvC; NB-Dependent Outer Membrane Receptor Protein; NB-Dependent Maltose Outer Membrane Transporter MalA; Outer Membrane Receptor Proteins Mostly Fe Transport-Like; 50S Ribosomal Protein L; NB-Dependent Outer Membrane Ferripyoverdine Receptor; 3-Dehydroquinate Synthase; DEAD/DEAH Box Helicase-Like; Peptidase; NB Dependent Receptor Protein; 1-(5-Phosphoribosyl)-5-; Argininosuccinate Synthase; NB-Dependent Receptor Domain Protein
Number of amino acids: Translated: 911; Mature: 910
Protein sequence:
>911_residues MAQDADPAAEAGGEEEIVVSGFRASLESAVGAKKERDQVVESISAEDIGKLPDASIAESIARLPGLTSQRVSGRSNSISI RGFAPDFSTTLLNGREQTSTGDNRAVEYDQYPSEVINQVLVYKTPMASIVGQGLSGTVDLRTIRPLEYGKSVISIGARGS LADLGKLNAGSKKYGYRVNGVFVDQFANDTIGVALSASYVDEPYQIQEFNAWGYAGAGTAASPVVIGGSKSYATSTQLTR LGLQGTLQWQPHPNFTSTLDAFYSDFKDDQIKRGIELPLAFGGAGVNVTDIDESGEFVFARAGTFTNVEGVVRNDVFERK AKLYSFGWNNRWEGDDGWNVTADVSLSKTDRNELIFESNAGTGRGGGVGAVDTIGFRSDRNGTVFSPTLNYGDYDLIQLT SPLGWGGDQTSVDGRRILGGQDGYYNNRIIEDELWQYRVEVERELEGFFRSVQFGVNYTDRSKSLVPDEAFVGLVANTDG LTSVPVPEQFRLGTTDLEYLGLGPVISYDPRDLLAAGLYQLVPNPYGDVVVKAYDVSEKLMTTYVQANIDHEMGSSLLTG NIGVQAIFTDQNSNGASASFIGTNPNGSPNIQGIPQRRSTDYVDVLPSLNLSLRTAGDFVIRFSAAREIIRPRLDDMRAS LSYGTTVGDPGGMTCPAGRLCAVVRGDAGNPDLRPWRANAVDLTFEKYFGSKGYLALQLFYKDLKSYIYNQAIPFDFTGY PIAPVGNDSNGNPIIVNFMGTVNAPINGEGGELYGAEVAGTLPFGEIVGALDGFGVTGGASYTKTKIAPTPGAPAEDIPG YSKWVANGTIFFEKWGFNARASARYRSSFVGELSGFGGNRVRRRARPETIIDAQIGYDFQPGSALEGLSIFVQGQNLTDE PFVTDDPRDARAVIDYQVYGRRFLAGASFKF
Sequences:
>Translated_911_residues MAQDADPAAEAGGEEEIVVSGFRASLESAVGAKKERDQVVESISAEDIGKLPDASIAESIARLPGLTSQRVSGRSNSISI RGFAPDFSTTLLNGREQTSTGDNRAVEYDQYPSEVINQVLVYKTPMASIVGQGLSGTVDLRTIRPLEYGKSVISIGARGS LADLGKLNAGSKKYGYRVNGVFVDQFANDTIGVALSASYVDEPYQIQEFNAWGYAGAGTAASPVVIGGSKSYATSTQLTR LGLQGTLQWQPHPNFTSTLDAFYSDFKDDQIKRGIELPLAFGGAGVNVTDIDESGEFVFARAGTFTNVEGVVRNDVFERK AKLYSFGWNNRWEGDDGWNVTADVSLSKTDRNELIFESNAGTGRGGGVGAVDTIGFRSDRNGTVFSPTLNYGDYDLIQLT SPLGWGGDQTSVDGRRILGGQDGYYNNRIIEDELWQYRVEVERELEGFFRSVQFGVNYTDRSKSLVPDEAFVGLVANTDG LTSVPVPEQFRLGTTDLEYLGLGPVISYDPRDLLAAGLYQLVPNPYGDVVVKAYDVSEKLMTTYVQANIDHEMGSSLLTG NIGVQAIFTDQNSNGASASFIGTNPNGSPNIQGIPQRRSTDYVDVLPSLNLSLRTAGDFVIRFSAAREIIRPRLDDMRAS LSYGTTVGDPGGMTCPAGRLCAVVRGDAGNPDLRPWRANAVDLTFEKYFGSKGYLALQLFYKDLKSYIYNQAIPFDFTGY PIAPVGNDSNGNPIIVNFMGTVNAPINGEGGELYGAEVAGTLPFGEIVGALDGFGVTGGASYTKTKIAPTPGAPAEDIPG YSKWVANGTIFFEKWGFNARASARYRSSFVGELSGFGGNRVRRRARPETIIDAQIGYDFQPGSALEGLSIFVQGQNLTDE PFVTDDPRDARAVIDYQVYGRRFLAGASFKF >Mature_910_residues AQDADPAAEAGGEEEIVVSGFRASLESAVGAKKERDQVVESISAEDIGKLPDASIAESIARLPGLTSQRVSGRSNSISIR GFAPDFSTTLLNGREQTSTGDNRAVEYDQYPSEVINQVLVYKTPMASIVGQGLSGTVDLRTIRPLEYGKSVISIGARGSL ADLGKLNAGSKKYGYRVNGVFVDQFANDTIGVALSASYVDEPYQIQEFNAWGYAGAGTAASPVVIGGSKSYATSTQLTRL GLQGTLQWQPHPNFTSTLDAFYSDFKDDQIKRGIELPLAFGGAGVNVTDIDESGEFVFARAGTFTNVEGVVRNDVFERKA KLYSFGWNNRWEGDDGWNVTADVSLSKTDRNELIFESNAGTGRGGGVGAVDTIGFRSDRNGTVFSPTLNYGDYDLIQLTS PLGWGGDQTSVDGRRILGGQDGYYNNRIIEDELWQYRVEVERELEGFFRSVQFGVNYTDRSKSLVPDEAFVGLVANTDGL TSVPVPEQFRLGTTDLEYLGLGPVISYDPRDLLAAGLYQLVPNPYGDVVVKAYDVSEKLMTTYVQANIDHEMGSSLLTGN IGVQAIFTDQNSNGASASFIGTNPNGSPNIQGIPQRRSTDYVDVLPSLNLSLRTAGDFVIRFSAAREIIRPRLDDMRASL SYGTTVGDPGGMTCPAGRLCAVVRGDAGNPDLRPWRANAVDLTFEKYFGSKGYLALQLFYKDLKSYIYNQAIPFDFTGYP IAPVGNDSNGNPIIVNFMGTVNAPINGEGGELYGAEVAGTLPFGEIVGALDGFGVTGGASYTKTKIAPTPGAPAEDIPGY SKWVANGTIFFEKWGFNARASARYRSSFVGELSGFGGNRVRRRARPETIIDAQIGYDFQPGSALEGLSIFVQGQNLTDEP FVTDDPRDARAVIDYQVYGRRFLAGASFKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98245; Mature: 98114
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQDADPAAEAGGEEEIVVSGFRASLESAVGAKKERDQVVESISAEDIGKLPDASIAESI CCCCCCCHHHCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHCCHHHHCCCCCHHHHHHH ARLPGLTSQRVSGRSNSISIRGFAPDFSTTLLNGREQTSTGDNRAVEYDQYPSEVINQVL HHCCCCCCHHCCCCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHH VYKTPMASIVGQGLSGTVDLRTIRPLEYGKSVISIGARGSLADLGKLNAGSKKYGYRVNG HCCCCHHHHHCCCCCCEEEEEEECCHHHCCCEEEECCCCCHHHHHCCCCCCCCCCEEEEE VFVDQFANDTIGVALSASYVDEPYQIQEFNAWGYAGAGTAASPVVIGGSKSYATSTQLTR EEEECCCCCCEEEEEEHHHCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCHHHHHE LGLQGTLQWQPHPNFTSTLDAFYSDFKDDQIKRGIELPLAFGGAGVNVTDIDESGEFVFA ECCCEEEEECCCCCHHHHHHHHHHHCCHHHHHCCCCCEEEECCCCCEEEECCCCCCEEEE RAGTFTNVEGVVRNDVFERKAKLYSFGWNNRWEGDDGWNVTADVSLSKTDRNELIFESNA ECCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEEECCC GTGRGGGVGAVDTIGFRSDRNGTVFSPTLNYGDYDLIQLTSPLGWGGDQTSVDGRRILGG CCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECC QDGYYNNRIIEDELWQYRVEVERELEGFFRSVQFGVNYTDRSKSLVPDEAFVGLVANTDG CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHEEEEEECCCC LTSVPVPEQFRLGTTDLEYLGLGPVISYDPRDLLAAGLYQLVPNPYGDVVVKAYDVSEKL CCCCCCCHHEECCCCCHHHCCCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHH MTTYVQANIDHEMGSSLLTGNIGVQAIFTDQNSNGASASFIGTNPNGSPNIQGIPQRRST HHHHHHCCCCHHHCCCEEECCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCC DYVDVLPSLNLSLRTAGDFVIRFSAAREIIRPRLDDMRASLSYGTTVGDPGGMTCPAGRL CCEECCCCCCEEEEECCCEEEEEHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCE CAVVRGDAGNPDLRPWRANAVDLTFEKYFGSKGYLALQLFYKDLKSYIYNQAIPFDFTGY EEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCC PIAPVGNDSNGNPIIVNFMGTVNAPINGEGGELYGAEVAGTLPFGEIVGALDGFGVTGGA CCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEECCEEECCCCHHHHHHHHCCCCCCCCC SYTKTKIAPTPGAPAEDIPGYSKWVANGTIFFEKWGFNARASARYRSSFVGELSGFGGNR CCCEEEECCCCCCCHHHCCCHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCHH VRRRARPETIIDAQIGYDFQPGSALEGLSIFVQGQNLTDEPFVTDDPRDARAVIDYQVYG HHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEHHC RRFLAGASFKF CEEECCCCCCC >Mature Secondary Structure AQDADPAAEAGGEEEIVVSGFRASLESAVGAKKERDQVVESISAEDIGKLPDASIAESI CCCCCCHHHCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHCCHHHHCCCCCHHHHHHH ARLPGLTSQRVSGRSNSISIRGFAPDFSTTLLNGREQTSTGDNRAVEYDQYPSEVINQVL HHCCCCCCHHCCCCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHH VYKTPMASIVGQGLSGTVDLRTIRPLEYGKSVISIGARGSLADLGKLNAGSKKYGYRVNG HCCCCHHHHHCCCCCCEEEEEEECCHHHCCCEEEECCCCCHHHHHCCCCCCCCCCEEEEE VFVDQFANDTIGVALSASYVDEPYQIQEFNAWGYAGAGTAASPVVIGGSKSYATSTQLTR EEEECCCCCCEEEEEEHHHCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCHHHHHE LGLQGTLQWQPHPNFTSTLDAFYSDFKDDQIKRGIELPLAFGGAGVNVTDIDESGEFVFA ECCCEEEEECCCCCHHHHHHHHHHHCCHHHHHCCCCCEEEECCCCCEEEECCCCCCEEEE RAGTFTNVEGVVRNDVFERKAKLYSFGWNNRWEGDDGWNVTADVSLSKTDRNELIFESNA ECCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEEECCC GTGRGGGVGAVDTIGFRSDRNGTVFSPTLNYGDYDLIQLTSPLGWGGDQTSVDGRRILGG CCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECC QDGYYNNRIIEDELWQYRVEVERELEGFFRSVQFGVNYTDRSKSLVPDEAFVGLVANTDG CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHEEEEEECCCC LTSVPVPEQFRLGTTDLEYLGLGPVISYDPRDLLAAGLYQLVPNPYGDVVVKAYDVSEKL CCCCCCCHHEECCCCCHHHCCCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHH MTTYVQANIDHEMGSSLLTGNIGVQAIFTDQNSNGASASFIGTNPNGSPNIQGIPQRRST HHHHHHCCCCHHHCCCEEECCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCC DYVDVLPSLNLSLRTAGDFVIRFSAAREIIRPRLDDMRASLSYGTTVGDPGGMTCPAGRL CCEECCCCCCEEEEECCCEEEEEHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCE CAVVRGDAGNPDLRPWRANAVDLTFEKYFGSKGYLALQLFYKDLKSYIYNQAIPFDFTGY EEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCC PIAPVGNDSNGNPIIVNFMGTVNAPINGEGGELYGAEVAGTLPFGEIVGALDGFGVTGGA CCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEECCEEECCCCHHHHHHHHCCCCCCCCC SYTKTKIAPTPGAPAEDIPGYSKWVANGTIFFEKWGFNARASARYRSSFVGELSGFGGNR CCCEEEECCCCCCCHHHCCCHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCHH VRRRARPETIIDAQIGYDFQPGSALEGLSIFVQGQNLTDEPFVTDDPRDARAVIDYQVYG HHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEHHC RRFLAGASFKF CEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA