Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485677

Identifier: 103485677

GI number: 103485677

Start: 185217

End: 187952

Strand: Direct

Name: 103485677

Synonym: Sala_0181

Alternate gene names: NA

Gene position: 185217-187952 (Clockwise)

Preceding gene: 103485676

Following gene: 103485678

Centisome position: 5.54

GC content: 63.12

Gene sequence:

>2736_bases
ATGGCGCAGGATGCCGATCCCGCCGCCGAAGCGGGCGGCGAAGAAGAAATCGTCGTTTCGGGCTTCCGCGCCAGCCTCGA
AAGCGCTGTCGGCGCCAAAAAGGAACGCGATCAGGTCGTCGAATCGATTTCGGCCGAAGACATCGGCAAGCTGCCCGATG
CCTCGATCGCCGAATCGATCGCGCGCCTGCCGGGCCTGACGTCGCAGCGCGTCTCGGGCCGCTCGAACTCGATCTCGATC
CGCGGCTTTGCGCCCGACTTTTCGACGACTTTGCTCAACGGCCGCGAACAGACCTCGACCGGCGACAACCGCGCGGTCGA
ATATGACCAATATCCCAGCGAAGTGATCAACCAGGTCCTCGTCTACAAGACGCCGATGGCGTCGATCGTCGGGCAGGGGC
TTTCGGGCACCGTCGACCTGCGCACCATCCGCCCGCTCGAATATGGCAAGAGCGTCATCTCGATCGGCGCGCGCGGCAGC
CTCGCCGACCTCGGCAAGCTCAACGCGGGGTCGAAAAAATACGGCTACCGCGTCAACGGCGTGTTCGTCGACCAGTTCGC
GAACGACACGATCGGCGTCGCGCTCTCGGCGAGCTATGTCGACGAGCCCTATCAGATTCAGGAGTTCAACGCCTGGGGCT
ATGCGGGCGCCGGAACGGCGGCGAGCCCCGTGGTGATCGGCGGGTCGAAAAGCTACGCGACCTCGACCCAGCTCACCCGC
CTCGGCCTCCAGGGCACGCTGCAATGGCAGCCGCACCCCAATTTCACCTCGACGCTCGATGCCTTTTATTCGGACTTCAA
GGACGACCAGATCAAGCGCGGGATCGAACTGCCGCTCGCCTTCGGCGGCGCCGGGGTCAATGTCACCGACATCGACGAGA
GCGGCGAGTTCGTCTTTGCCCGTGCCGGAACCTTCACCAATGTCGAGGGCGTCGTGCGCAACGACGTGTTCGAGCGCAAG
GCCAAGCTTTACAGCTTCGGATGGAACAACCGCTGGGAAGGCGACGATGGCTGGAACGTCACCGCCGACGTCAGCCTGTC
GAAGACCGACCGCAACGAGCTGATCTTTGAAAGCAATGCCGGCACTGGCCGCGGCGGCGGCGTCGGCGCGGTCGACACGA
TCGGTTTCCGTAGTGACCGTAATGGCACGGTGTTCAGCCCGACGCTCAACTATGGTGACTATGACCTCATCCAGCTCACC
AGCCCGCTCGGCTGGGGCGGCGATCAGACGAGCGTTGACGGCCGCCGCATCCTTGGCGGGCAGGACGGTTATTACAACAA
CCGCATCATTGAGGACGAGCTGTGGCAATATCGCGTCGAGGTCGAACGCGAACTCGAAGGCTTTTTCCGCTCGGTCCAGT
TCGGCGTCAACTACACCGATCGCTCGAAAAGCCTCGTCCCCGACGAAGCCTTTGTCGGGCTCGTCGCCAACACCGACGGG
TTGACCAGCGTGCCGGTGCCCGAACAGTTCCGCCTCGGCACCACCGACCTCGAATATCTCGGCCTCGGTCCCGTCATCAG
CTACGATCCGCGCGACCTGCTTGCGGCCGGGCTCTACCAGTTGGTACCGAACCCCTATGGCGATGTGGTCGTCAAGGCCT
ATGATGTCTCCGAAAAGCTGATGACCACCTATGTTCAGGCGAATATCGACCATGAAATGGGCTCGTCGCTGCTCACGGGC
AACATCGGCGTCCAGGCGATCTTCACCGACCAGAACTCGAACGGCGCGAGCGCGTCCTTCATCGGCACCAATCCCAATGG
ATCGCCCAACATCCAGGGCATCCCGCAGCGTCGCAGCACCGACTATGTCGATGTGCTGCCCAGCCTCAACCTGTCGCTGC
GCACGGCGGGCGATTTCGTGATCCGGTTCAGCGCGGCGCGCGAGATCATCCGCCCGCGCCTCGACGACATGCGCGCTTCG
CTGAGCTATGGCACCACCGTCGGCGATCCGGGCGGCATGACCTGCCCAGCCGGACGGCTGTGCGCTGTCGTACGCGGCGA
TGCGGGCAATCCCGATCTCCGACCGTGGCGCGCCAACGCTGTCGATCTGACCTTCGAAAAATATTTCGGGTCAAAGGGTT
ATCTGGCGTTGCAACTCTTCTACAAGGATCTGAAGAGCTATATCTATAATCAGGCGATCCCCTTCGACTTCACCGGCTAT
CCGATCGCGCCGGTTGGTAATGACTCGAACGGCAACCCGATCATCGTCAACTTTATGGGCACGGTGAACGCCCCGATCAA
CGGCGAGGGCGGCGAGCTCTACGGCGCCGAAGTCGCGGGCACCTTGCCCTTCGGCGAGATTGTCGGCGCGCTCGACGGCT
TCGGTGTGACCGGCGGCGCTTCCTATACCAAGACGAAGATTGCGCCGACCCCCGGTGCGCCCGCGGAGGATATCCCCGGC
TATTCGAAATGGGTCGCGAACGGCACCATCTTCTTCGAAAAATGGGGATTCAACGCCCGTGCCAGCGCACGTTACCGGTC
GAGCTTCGTCGGCGAGCTGTCGGGCTTCGGTGGCAATCGTGTGCGCCGCCGCGCGCGGCCGGAAACGATCATCGACGCGC
AGATCGGCTATGATTTCCAGCCGGGCAGCGCGCTCGAAGGCCTGTCGATCTTCGTGCAGGGCCAGAATCTGACCGACGAA
CCCTTCGTCACCGACGATCCGCGCGACGCGCGTGCGGTCATCGACTATCAGGTCTATGGTCGCCGCTTCCTGGCGGGCGC
CTCGTTCAAGTTCTGA

Upstream 100 bases:

>100_bases
GCCAGGGGAGCCTTTTATGACCATGCCGACCAGCCTTCGTCGCGGCGCCAGCGCCATCGCGATGGGCCTTGCCTTGACCG
CCGTCCTGCCTGCCGCCGCG

Downstream 100 bases:

>100_bases
TCCTCCCTGATGGGGGCGGCTGCGTCCAGCCGTCCCCATCATCTTGTTGCGTAAAGAGGCATTGGCCGATCAAATGACCC
CCATGCGGATCATCATCATC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: Nb-Dependent Receptor; NB-Dependent Receptor Subfamily; NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Nb-Dependent Outer Membrane Receptor Protein; NB-Dependent Receptor Subfamily Protein; Outer Membrane Insertion C-Terminal Signal; NB Dependent Receptor-Related Protein; NB-Dependent Receptor-Like Protein; NB-Dependent Receptor Protein; Nucleoside Diphosphate Kinase; Crossover Junction Endodeoxyribonuclease RuvC; NB-Dependent Outer Membrane Receptor Protein; NB-Dependent Maltose Outer Membrane Transporter MalA; Outer Membrane Receptor Proteins Mostly Fe Transport-Like; 50S Ribosomal Protein L; NB-Dependent Outer Membrane Ferripyoverdine Receptor; 3-Dehydroquinate Synthase; DEAD/DEAH Box Helicase-Like; Peptidase; NB Dependent Receptor Protein; 1-(5-Phosphoribosyl)-5-; Argininosuccinate Synthase; NB-Dependent Receptor Domain Protein

Number of amino acids: Translated: 911; Mature: 910

Protein sequence:

>911_residues
MAQDADPAAEAGGEEEIVVSGFRASLESAVGAKKERDQVVESISAEDIGKLPDASIAESIARLPGLTSQRVSGRSNSISI
RGFAPDFSTTLLNGREQTSTGDNRAVEYDQYPSEVINQVLVYKTPMASIVGQGLSGTVDLRTIRPLEYGKSVISIGARGS
LADLGKLNAGSKKYGYRVNGVFVDQFANDTIGVALSASYVDEPYQIQEFNAWGYAGAGTAASPVVIGGSKSYATSTQLTR
LGLQGTLQWQPHPNFTSTLDAFYSDFKDDQIKRGIELPLAFGGAGVNVTDIDESGEFVFARAGTFTNVEGVVRNDVFERK
AKLYSFGWNNRWEGDDGWNVTADVSLSKTDRNELIFESNAGTGRGGGVGAVDTIGFRSDRNGTVFSPTLNYGDYDLIQLT
SPLGWGGDQTSVDGRRILGGQDGYYNNRIIEDELWQYRVEVERELEGFFRSVQFGVNYTDRSKSLVPDEAFVGLVANTDG
LTSVPVPEQFRLGTTDLEYLGLGPVISYDPRDLLAAGLYQLVPNPYGDVVVKAYDVSEKLMTTYVQANIDHEMGSSLLTG
NIGVQAIFTDQNSNGASASFIGTNPNGSPNIQGIPQRRSTDYVDVLPSLNLSLRTAGDFVIRFSAAREIIRPRLDDMRAS
LSYGTTVGDPGGMTCPAGRLCAVVRGDAGNPDLRPWRANAVDLTFEKYFGSKGYLALQLFYKDLKSYIYNQAIPFDFTGY
PIAPVGNDSNGNPIIVNFMGTVNAPINGEGGELYGAEVAGTLPFGEIVGALDGFGVTGGASYTKTKIAPTPGAPAEDIPG
YSKWVANGTIFFEKWGFNARASARYRSSFVGELSGFGGNRVRRRARPETIIDAQIGYDFQPGSALEGLSIFVQGQNLTDE
PFVTDDPRDARAVIDYQVYGRRFLAGASFKF

Sequences:

>Translated_911_residues
MAQDADPAAEAGGEEEIVVSGFRASLESAVGAKKERDQVVESISAEDIGKLPDASIAESIARLPGLTSQRVSGRSNSISI
RGFAPDFSTTLLNGREQTSTGDNRAVEYDQYPSEVINQVLVYKTPMASIVGQGLSGTVDLRTIRPLEYGKSVISIGARGS
LADLGKLNAGSKKYGYRVNGVFVDQFANDTIGVALSASYVDEPYQIQEFNAWGYAGAGTAASPVVIGGSKSYATSTQLTR
LGLQGTLQWQPHPNFTSTLDAFYSDFKDDQIKRGIELPLAFGGAGVNVTDIDESGEFVFARAGTFTNVEGVVRNDVFERK
AKLYSFGWNNRWEGDDGWNVTADVSLSKTDRNELIFESNAGTGRGGGVGAVDTIGFRSDRNGTVFSPTLNYGDYDLIQLT
SPLGWGGDQTSVDGRRILGGQDGYYNNRIIEDELWQYRVEVERELEGFFRSVQFGVNYTDRSKSLVPDEAFVGLVANTDG
LTSVPVPEQFRLGTTDLEYLGLGPVISYDPRDLLAAGLYQLVPNPYGDVVVKAYDVSEKLMTTYVQANIDHEMGSSLLTG
NIGVQAIFTDQNSNGASASFIGTNPNGSPNIQGIPQRRSTDYVDVLPSLNLSLRTAGDFVIRFSAAREIIRPRLDDMRAS
LSYGTTVGDPGGMTCPAGRLCAVVRGDAGNPDLRPWRANAVDLTFEKYFGSKGYLALQLFYKDLKSYIYNQAIPFDFTGY
PIAPVGNDSNGNPIIVNFMGTVNAPINGEGGELYGAEVAGTLPFGEIVGALDGFGVTGGASYTKTKIAPTPGAPAEDIPG
YSKWVANGTIFFEKWGFNARASARYRSSFVGELSGFGGNRVRRRARPETIIDAQIGYDFQPGSALEGLSIFVQGQNLTDE
PFVTDDPRDARAVIDYQVYGRRFLAGASFKF
>Mature_910_residues
AQDADPAAEAGGEEEIVVSGFRASLESAVGAKKERDQVVESISAEDIGKLPDASIAESIARLPGLTSQRVSGRSNSISIR
GFAPDFSTTLLNGREQTSTGDNRAVEYDQYPSEVINQVLVYKTPMASIVGQGLSGTVDLRTIRPLEYGKSVISIGARGSL
ADLGKLNAGSKKYGYRVNGVFVDQFANDTIGVALSASYVDEPYQIQEFNAWGYAGAGTAASPVVIGGSKSYATSTQLTRL
GLQGTLQWQPHPNFTSTLDAFYSDFKDDQIKRGIELPLAFGGAGVNVTDIDESGEFVFARAGTFTNVEGVVRNDVFERKA
KLYSFGWNNRWEGDDGWNVTADVSLSKTDRNELIFESNAGTGRGGGVGAVDTIGFRSDRNGTVFSPTLNYGDYDLIQLTS
PLGWGGDQTSVDGRRILGGQDGYYNNRIIEDELWQYRVEVERELEGFFRSVQFGVNYTDRSKSLVPDEAFVGLVANTDGL
TSVPVPEQFRLGTTDLEYLGLGPVISYDPRDLLAAGLYQLVPNPYGDVVVKAYDVSEKLMTTYVQANIDHEMGSSLLTGN
IGVQAIFTDQNSNGASASFIGTNPNGSPNIQGIPQRRSTDYVDVLPSLNLSLRTAGDFVIRFSAAREIIRPRLDDMRASL
SYGTTVGDPGGMTCPAGRLCAVVRGDAGNPDLRPWRANAVDLTFEKYFGSKGYLALQLFYKDLKSYIYNQAIPFDFTGYP
IAPVGNDSNGNPIIVNFMGTVNAPINGEGGELYGAEVAGTLPFGEIVGALDGFGVTGGASYTKTKIAPTPGAPAEDIPGY
SKWVANGTIFFEKWGFNARASARYRSSFVGELSGFGGNRVRRRARPETIIDAQIGYDFQPGSALEGLSIFVQGQNLTDEP
FVTDDPRDARAVIDYQVYGRRFLAGASFKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 98245; Mature: 98114

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQDADPAAEAGGEEEIVVSGFRASLESAVGAKKERDQVVESISAEDIGKLPDASIAESI
CCCCCCCHHHCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHCCHHHHCCCCCHHHHHHH
ARLPGLTSQRVSGRSNSISIRGFAPDFSTTLLNGREQTSTGDNRAVEYDQYPSEVINQVL
HHCCCCCCHHCCCCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHH
VYKTPMASIVGQGLSGTVDLRTIRPLEYGKSVISIGARGSLADLGKLNAGSKKYGYRVNG
HCCCCHHHHHCCCCCCEEEEEEECCHHHCCCEEEECCCCCHHHHHCCCCCCCCCCEEEEE
VFVDQFANDTIGVALSASYVDEPYQIQEFNAWGYAGAGTAASPVVIGGSKSYATSTQLTR
EEEECCCCCCEEEEEEHHHCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCHHHHHE
LGLQGTLQWQPHPNFTSTLDAFYSDFKDDQIKRGIELPLAFGGAGVNVTDIDESGEFVFA
ECCCEEEEECCCCCHHHHHHHHHHHCCHHHHHCCCCCEEEECCCCCEEEECCCCCCEEEE
RAGTFTNVEGVVRNDVFERKAKLYSFGWNNRWEGDDGWNVTADVSLSKTDRNELIFESNA
ECCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEEECCC
GTGRGGGVGAVDTIGFRSDRNGTVFSPTLNYGDYDLIQLTSPLGWGGDQTSVDGRRILGG
CCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECC
QDGYYNNRIIEDELWQYRVEVERELEGFFRSVQFGVNYTDRSKSLVPDEAFVGLVANTDG
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHEEEEEECCCC
LTSVPVPEQFRLGTTDLEYLGLGPVISYDPRDLLAAGLYQLVPNPYGDVVVKAYDVSEKL
CCCCCCCHHEECCCCCHHHCCCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHH
MTTYVQANIDHEMGSSLLTGNIGVQAIFTDQNSNGASASFIGTNPNGSPNIQGIPQRRST
HHHHHHCCCCHHHCCCEEECCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
DYVDVLPSLNLSLRTAGDFVIRFSAAREIIRPRLDDMRASLSYGTTVGDPGGMTCPAGRL
CCEECCCCCCEEEEECCCEEEEEHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCE
CAVVRGDAGNPDLRPWRANAVDLTFEKYFGSKGYLALQLFYKDLKSYIYNQAIPFDFTGY
EEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCC
PIAPVGNDSNGNPIIVNFMGTVNAPINGEGGELYGAEVAGTLPFGEIVGALDGFGVTGGA
CCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEECCEEECCCCHHHHHHHHCCCCCCCCC
SYTKTKIAPTPGAPAEDIPGYSKWVANGTIFFEKWGFNARASARYRSSFVGELSGFGGNR
CCCEEEECCCCCCCHHHCCCHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCHH
VRRRARPETIIDAQIGYDFQPGSALEGLSIFVQGQNLTDEPFVTDDPRDARAVIDYQVYG
HHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEHHC
RRFLAGASFKF
CEEECCCCCCC
>Mature Secondary Structure 
AQDADPAAEAGGEEEIVVSGFRASLESAVGAKKERDQVVESISAEDIGKLPDASIAESI
CCCCCCHHHCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHCCHHHHCCCCCHHHHHHH
ARLPGLTSQRVSGRSNSISIRGFAPDFSTTLLNGREQTSTGDNRAVEYDQYPSEVINQVL
HHCCCCCCHHCCCCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHH
VYKTPMASIVGQGLSGTVDLRTIRPLEYGKSVISIGARGSLADLGKLNAGSKKYGYRVNG
HCCCCHHHHHCCCCCCEEEEEEECCHHHCCCEEEECCCCCHHHHHCCCCCCCCCCEEEEE
VFVDQFANDTIGVALSASYVDEPYQIQEFNAWGYAGAGTAASPVVIGGSKSYATSTQLTR
EEEECCCCCCEEEEEEHHHCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCHHHHHE
LGLQGTLQWQPHPNFTSTLDAFYSDFKDDQIKRGIELPLAFGGAGVNVTDIDESGEFVFA
ECCCEEEEECCCCCHHHHHHHHHHHCCHHHHHCCCCCEEEECCCCCEEEECCCCCCEEEE
RAGTFTNVEGVVRNDVFERKAKLYSFGWNNRWEGDDGWNVTADVSLSKTDRNELIFESNA
ECCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEEECCC
GTGRGGGVGAVDTIGFRSDRNGTVFSPTLNYGDYDLIQLTSPLGWGGDQTSVDGRRILGG
CCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECC
QDGYYNNRIIEDELWQYRVEVERELEGFFRSVQFGVNYTDRSKSLVPDEAFVGLVANTDG
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHEEEEEECCCC
LTSVPVPEQFRLGTTDLEYLGLGPVISYDPRDLLAAGLYQLVPNPYGDVVVKAYDVSEKL
CCCCCCCHHEECCCCCHHHCCCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHH
MTTYVQANIDHEMGSSLLTGNIGVQAIFTDQNSNGASASFIGTNPNGSPNIQGIPQRRST
HHHHHHCCCCHHHCCCEEECCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
DYVDVLPSLNLSLRTAGDFVIRFSAAREIIRPRLDDMRASLSYGTTVGDPGGMTCPAGRL
CCEECCCCCCEEEEECCCEEEEEHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCE
CAVVRGDAGNPDLRPWRANAVDLTFEKYFGSKGYLALQLFYKDLKSYIYNQAIPFDFTGY
EEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCC
PIAPVGNDSNGNPIIVNFMGTVNAPINGEGGELYGAEVAGTLPFGEIVGALDGFGVTGGA
CCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEECCEEECCCCHHHHHHHHCCCCCCCCC
SYTKTKIAPTPGAPAEDIPGYSKWVANGTIFFEKWGFNARASARYRSSFVGELSGFGGNR
CCCEEEECCCCCCCHHHCCCHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCHH
VRRRARPETIIDAQIGYDFQPGSALEGLSIFVQGQNLTDEPFVTDDPRDARAVIDYQVYG
HHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEHHC
RRFLAGASFKF
CEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA