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The map label for this gene is ydfG [C]

Identifier: 103485580

GI number: 103485580

Start: 86908

End: 87717

Strand: Reverse

Name: ydfG [C]

Synonym: Sala_0082

Alternate gene names: 103485580

Gene position: 87717-86908 (Counterclockwise)

Preceding gene: 103485581

Following gene: 103485579

Centisome position: 2.62

GC content: 66.17

Gene sequence:

>810_bases
ATGAACGAAGCAAAGGGCACTGCCCTCATCACTGGCGGCTCCACCGGAATCGGTGCGATCTATGCCGACCGCCTGGCGCG
CCAAGGATATGATCTGATCCTGGTTGCGCGCAACGCCGCAAAGCTGGATCAGGTCGCCGCAACCATTCGCACAGCCACCG
GTCGCAATGTCGACACCGTGCCCGCCGACCTCTCCAATCCCGGCGAGCTGCGCCTGATCGAAGCGCGCCTCATCAACGAT
CGCCGCATCACGATGCTGGTCAACAATGCGGGTATCGGCGCGCCGGTCCCGACGTGGCAGGCCGACATCGATCAGATGGA
ATCAATGATCGACATCAATGCGACCGCGCTCGCCCGGCTGACCTATGCCGTCGCCCAGCGTTTTGCTGCAGCCGGCAACG
GCACGATCATCAACATCGCATCGACCGTCGCGATCGCCCCCGAGTTCATGCTCAACGGCGTCTACGGCGCGACCAAGGCC
TTCGTCGTGGCGCTCACGGCTTCGCTGCACGCCGAGCTCGCCGACAAGGGCGTCCGCGTCCAGGTTGTCCTGCCCGGCGC
GACGGCGACCGAATTCTGGGACCTGTCGGGTGTGCCGCTGTCCGGCGTCCCCGCCGAGATCGTGATGTCGGCCGACGCCA
TGGTCGACGCGGCGCTCGCCGGTCTCGAACTTGGCGAGACCGTCACCATTCCCGCGCTCCCCGATGCCGCTGAGTGGACC
GCGTTCGAAGCGGCCCGGACCGCGATGCTCCCCAATCTGTCGCTGACCAACCCGGCCGATCGATATCGGGCCGTTGCCGC
CGCCGCTTGA

Upstream 100 bases:

>100_bases
TTTCCCTTTCTACCGCCATTCTCCCCACCCTCTAAATCGCTCTGGTCGCCCCGATCAAACCGGTCGGTCGGCATCCCAAC
CTTCTTCGAAAGGAAGAGCG

Downstream 100 bases:

>100_bases
ACGCCCTCGACCAGTCCGAAACAGGAGAAAGACTATGTCCCCCGCCAAATCAATTTCGCTCCGCCGCCTGCTGTCCACCG
CCATTTCTGTCGCGGCGCTC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MNEAKGTALITGGSTGIGAIYADRLARQGYDLILVARNAAKLDQVAATIRTATGRNVDTVPADLSNPGELRLIEARLIND
RRITMLVNNAGIGAPVPTWQADIDQMESMIDINATALARLTYAVAQRFAAAGNGTIINIASTVAIAPEFMLNGVYGATKA
FVVALTASLHAELADKGVRVQVVLPGATATEFWDLSGVPLSGVPAEIVMSADAMVDAALAGLELGETVTIPALPDAAEWT
AFEAARTAMLPNLSLTNPADRYRAVAAAA

Sequences:

>Translated_269_residues
MNEAKGTALITGGSTGIGAIYADRLARQGYDLILVARNAAKLDQVAATIRTATGRNVDTVPADLSNPGELRLIEARLIND
RRITMLVNNAGIGAPVPTWQADIDQMESMIDINATALARLTYAVAQRFAAAGNGTIINIASTVAIAPEFMLNGVYGATKA
FVVALTASLHAELADKGVRVQVVLPGATATEFWDLSGVPLSGVPAEIVMSADAMVDAALAGLELGETVTIPALPDAAEWT
AFEAARTAMLPNLSLTNPADRYRAVAAAA
>Mature_269_residues
MNEAKGTALITGGSTGIGAIYADRLARQGYDLILVARNAAKLDQVAATIRTATGRNVDTVPADLSNPGELRLIEARLIND
RRITMLVNNAGIGAPVPTWQADIDQMESMIDINATALARLTYAVAQRFAAAGNGTIINIASTVAIAPEFMLNGVYGATKA
FVVALTASLHAELADKGVRVQVVLPGATATEFWDLSGVPLSGVPAEIVMSADAMVDAALAGLELGETVTIPALPDAAEWT
AFEAARTAMLPNLSLTNPADRYRAVAAAA

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705855, Length=189, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI4557649, Length=186, Percent_Identity=33.8709677419355, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI226371731, Length=185, Percent_Identity=31.3513513513514, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI225579078, Length=206, Percent_Identity=28.6407766990291, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI109715829, Length=194, Percent_Identity=31.4432989690722, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI32483357, Length=193, Percent_Identity=29.0155440414508, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1787820, Length=187, Percent_Identity=33.1550802139037, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87082100, Length=185, Percent_Identity=32.4324324324324, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787335, Length=212, Percent_Identity=29.2452830188679, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI25152911, Length=191, Percent_Identity=32.4607329842932, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=193, Percent_Identity=32.6424870466321, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI212646214, Length=197, Percent_Identity=29.9492385786802, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=196, Percent_Identity=31.6326530612245, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=202, Percent_Identity=32.1782178217822, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=194, Percent_Identity=31.4432989690722, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=203, Percent_Identity=31.0344827586207, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17559552, Length=191, Percent_Identity=27.7486910994764, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=200, Percent_Identity=31, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=194, Percent_Identity=31.4432989690722, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=199, Percent_Identity=29.6482412060301, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=202, Percent_Identity=31.1881188118812, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=208, Percent_Identity=29.3269230769231, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=203, Percent_Identity=29.064039408867, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17557668, Length=193, Percent_Identity=27.4611398963731, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=250, Percent_Identity=27.2, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=194, Percent_Identity=29.8969072164948, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=227, Percent_Identity=29.5154185022026, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=185, Percent_Identity=28.6486486486486, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=200, Percent_Identity=29.5, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=211, Percent_Identity=29.8578199052133, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17560332, Length=196, Percent_Identity=30.6122448979592, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=189, Percent_Identity=25.9259259259259, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=34.6938775510204, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6319635, Length=191, Percent_Identity=26.7015706806283, Blast_Score=67, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6322067, Length=205, Percent_Identity=25.8536585365854, Blast_Score=66, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24584752, Length=225, Percent_Identity=31.5555555555556, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI161076933, Length=184, Percent_Identity=31.5217391304348, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24584748, Length=184, Percent_Identity=31.5217391304348, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24640442, Length=234, Percent_Identity=31.1965811965812, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI28571526, Length=193, Percent_Identity=33.6787564766839, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI23397609, Length=198, Percent_Identity=32.8282828282828, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21357041, Length=193, Percent_Identity=34.1968911917098, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24584744, Length=187, Percent_Identity=28.3422459893048, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI28574402, Length=187, Percent_Identity=28.3422459893048, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24644339, Length=201, Percent_Identity=31.3432835820896, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27912; Mature: 27912

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEAKGTALITGGSTGIGAIYADRLARQGYDLILVARNAAKLDQVAATIRTATGRNVDTV
CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCC
PADLSNPGELRLIEARLINDRRITMLVNNAGIGAPVPTWQADIDQMESMIDINATALARL
CCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
TYAVAQRFAAAGNGTIINIASTVAIAPEFMLNGVYGATKAFVVALTASLHAELADKGVRV
HHHHHHHHHHCCCCEEEEECHHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
QVVLPGATATEFWDLSGVPLSGVPAEIVMSADAMVDAALAGLELGETVTIPALPDAAEWT
EEEECCCCCHHEECCCCCCCCCCCHHHHEEHHHHHHHHHHCCCCCCEEEECCCCCCHHHH
AFEAARTAMLPNLSLTNPADRYRAVAAAA
HHHHHHHHHCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MNEAKGTALITGGSTGIGAIYADRLARQGYDLILVARNAAKLDQVAATIRTATGRNVDTV
CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCC
PADLSNPGELRLIEARLINDRRITMLVNNAGIGAPVPTWQADIDQMESMIDINATALARL
CCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
TYAVAQRFAAAGNGTIINIASTVAIAPEFMLNGVYGATKAFVVALTASLHAELADKGVRV
HHHHHHHHHHCCCCEEEEECHHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
QVVLPGATATEFWDLSGVPLSGVPAEIVMSADAMVDAALAGLELGETVTIPALPDAAEWT
EEEECCCCCHHEECCCCCCCCCCCHHHHEEHHHHHHHHHHCCCCCCEEEECCCCCCHHHH
AFEAARTAMLPNLSLTNPADRYRAVAAAA
HHHHHHHHHCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12950922 [H]