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The map label for this gene is yhjC [C]

Identifier: 103485581

GI number: 103485581

Start: 87851

End: 88753

Strand: Reverse

Name: yhjC [C]

Synonym: Sala_0083

Alternate gene names: 103485581

Gene position: 88753-87851 (Counterclockwise)

Preceding gene: 103485582

Following gene: 103485580

Centisome position: 2.65

GC content: 64.01

Gene sequence:

>903_bases
ATGGATCGGCTGGACGCCATGCGGGTCTTATTGGCGGTCGTCGATGCCGGCAGCCTGTCAGCCGGAAGCCGCGCGCTTGG
ATCTCCTTTGCCCAGCGTCAGTCGTAAGGTTGCCGAACTCGAGCGCTACCTTGGAACCAATCTGCTCGTCAGGACGAGCC
GCAACATTCAGTTGACCGACGCGGGCCGCGACTATGTCGAAGCGGCGCGGCGTATCATCGCCGACCTAGAAGAAACCGAA
CGCCGGGCATCTGGGGAATATCAAACGCCCCGCGGAGAGTTGTCGATCACAATGCCGATCGAATTCGGCGTGCGGCACGT
CATCCCGATCGCGCTCGCCTTCATCGACGAATATCCCGAAGTCACACTGAATCTCATTACCTCCGACCGGCTCGTCCACA
TGGTCGACGAGCATGTCGACGTCGCGATCCGCCTCGGCCATTTGCCCGACAGCGCGCTCTTTGCGGTCAAGGCTGGCGAG
TTTCGCCTGATCGCCTGTGCCAGCCCTGCCTATCTGGACCGGCGCGGAGCGCCGACCAGCCCGCGCGAACTTTCCGGGCA
TGACGGGATCATGTTCGGACCGCTGCCGATGTTCTGGGGCTACCGCATCGATGGCGAGGATGTGATGTGCACGCCGCGTC
CGCGGGTCTCAGTCAACAGCGCGGCAGGAAATCTTGCGGCGGTGCTGAGCGGCGTGGGCGTCGCGCGGCTCTTCGACTAT
CAGGTGTCGGAGCATCTTCAGTCGGGCGCGCTCGTGCGCATTCTTCCTGATGCCGATGGCGAGCCGCGCCCCGTTCATAT
CGTTTACCCGCGCCAAGGTCTCCTGCCGCTCAAGGTCCGCGCCTTCATCGACTGGGCCTCGCCGCGCCTGCGCGCATCGT
GCACCGGACTGGACTGCGGCTGA

Upstream 100 bases:

>100_bases
CATGCCATTCGGGCGCGTGTCAACTTGGCGCCGCGCATGAAGCTATGTTGACCTCCCGAAGTCGGCTATTCCCCTCTGCT
CGGAGCGGGAGAAGGAGCAG

Downstream 100 bases:

>100_bases
CCGCGATGCCGAGAATGAGAGGCTTGCTCTCGCTTTCCCTTTCTACCGCCATTCTCCCCACCCTCTAAATCGCTCTGGTC
GCCCCGATCAAACCGGTCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MDRLDAMRVLLAVVDAGSLSAGSRALGSPLPSVSRKVAELERYLGTNLLVRTSRNIQLTDAGRDYVEAARRIIADLEETE
RRASGEYQTPRGELSITMPIEFGVRHVIPIALAFIDEYPEVTLNLITSDRLVHMVDEHVDVAIRLGHLPDSALFAVKAGE
FRLIACASPAYLDRRGAPTSPRELSGHDGIMFGPLPMFWGYRIDGEDVMCTPRPRVSVNSAAGNLAAVLSGVGVARLFDY
QVSEHLQSGALVRILPDADGEPRPVHIVYPRQGLLPLKVRAFIDWASPRLRASCTGLDCG

Sequences:

>Translated_300_residues
MDRLDAMRVLLAVVDAGSLSAGSRALGSPLPSVSRKVAELERYLGTNLLVRTSRNIQLTDAGRDYVEAARRIIADLEETE
RRASGEYQTPRGELSITMPIEFGVRHVIPIALAFIDEYPEVTLNLITSDRLVHMVDEHVDVAIRLGHLPDSALFAVKAGE
FRLIACASPAYLDRRGAPTSPRELSGHDGIMFGPLPMFWGYRIDGEDVMCTPRPRVSVNSAAGNLAAVLSGVGVARLFDY
QVSEHLQSGALVRILPDADGEPRPVHIVYPRQGLLPLKVRAFIDWASPRLRASCTGLDCG
>Mature_300_residues
MDRLDAMRVLLAVVDAGSLSAGSRALGSPLPSVSRKVAELERYLGTNLLVRTSRNIQLTDAGRDYVEAARRIIADLEETE
RRASGEYQTPRGELSITMPIEFGVRHVIPIALAFIDEYPEVTLNLITSDRLVHMVDEHVDVAIRLGHLPDSALFAVKAGE
FRLIACASPAYLDRRGAPTSPRELSGHDGIMFGPLPMFWGYRIDGEDVMCTPRPRVSVNSAAGNLAAVLSGVGVARLFDY
QVSEHLQSGALVRILPDADGEPRPVHIVYPRQGLLPLKVRAFIDWASPRLRASCTGLDCG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=30.8219178082192, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1789639, Length=286, Percent_Identity=30.7692307692308, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=31.986531986532, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1787128, Length=283, Percent_Identity=26.5017667844523, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=27.3972602739726, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87081978, Length=286, Percent_Identity=31.1188811188811, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1787589, Length=280, Percent_Identity=24.6428571428571, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789173, Length=284, Percent_Identity=24.6478873239437, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788297, Length=147, Percent_Identity=28.5714285714286, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI157672245, Length=149, Percent_Identity=29.5302013422819, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32747; Mature: 32747

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLDAMRVLLAVVDAGSLSAGSRALGSPLPSVSRKVAELERYLGTNLLVRTSRNIQLTD
CCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCEEEEC
AGRDYVEAARRIIADLEETERRASGEYQTPRGELSITMPIEFGVRHVIPIALAFIDEYPE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHCHHHHHHHHHHHHHCCCC
VTLNLITSDRLVHMVDEHVDVAIRLGHLPDSALFAVKAGEFRLIACASPAYLDRRGAPTS
EEEEEECCCHHHHHHHHCCEEEEEECCCCCCEEEEEECCCEEEEEECCCHHHHCCCCCCC
PRELSGHDGIMFGPLPMFWGYRIDGEDVMCTPRPRVSVNSAAGNLAAVLSGVGVARLFDY
CCCCCCCCCEEECCHHHHCCEEECCCCEEECCCCCEEECCCCCHHHHHHHCCCHHHHHHH
QVSEHLQSGALVRILPDADGEPRPVHIVYPRQGLLPLKVRAFIDWASPRLRASCTGLDCG
HHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCCEEECCCCCCC
>Mature Secondary Structure
MDRLDAMRVLLAVVDAGSLSAGSRALGSPLPSVSRKVAELERYLGTNLLVRTSRNIQLTD
CCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCEEEEC
AGRDYVEAARRIIADLEETERRASGEYQTPRGELSITMPIEFGVRHVIPIALAFIDEYPE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHCHHHHHHHHHHHHHCCCC
VTLNLITSDRLVHMVDEHVDVAIRLGHLPDSALFAVKAGEFRLIACASPAYLDRRGAPTS
EEEEEECCCHHHHHHHHCCEEEEEECCCCCCEEEEEECCCEEEEEECCCHHHHCCCCCCC
PRELSGHDGIMFGPLPMFWGYRIDGEDVMCTPRPRVSVNSAAGNLAAVLSGVGVARLFDY
CCCCCCCCCEEECCHHHHCCEEECCCCEEECCCCCEEECCCCCHHHHHHHCCCHHHHHHH
QVSEHLQSGALVRILPDADGEPRPVHIVYPRQGLLPLKVRAFIDWASPRLRASCTGLDCG
HHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]