| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103485579
Identifier: 103485579
GI number: 103485579
Start: 85527
End: 86873
Strand: Reverse
Name: 103485579
Synonym: Sala_0081
Alternate gene names: NA
Gene position: 86873-85527 (Counterclockwise)
Preceding gene: 103485580
Following gene: 103485578
Centisome position: 2.6
GC content: 63.85
Gene sequence:
>1347_bases ATGTCCCCCGCCAAATCAATTTCGCTCCGCCGCCTGCTGTCCACCGCCATTTCTGTCGCGGCGCTCGGCATGACCCTCCA GTCCAGCCCGAGCTTCGCCAGCAGCGCTGGCCCGTCCACCGCTATCACGGTCTCGGCCGCTGCGGCGGTCGCCGCACCGC AAGACGAGTCCATCCGCCCGTTTCATGTGAGCATCCCCGAAGAGGCGCTCACGGATCTTCGCCGCCGTCTCGCCGAGACG CGCTGGCCCGATCGCGAAAAGGTTTCGGACGCATCGCAGGGTGTGCAACTCGACCGTCTCGAACCCCTCGTCCGTTATTG GGGCACTGACTATGACTGGCGCAAGGGCGAAGCCCGCCTCAACGCCGTGCCGCAGTTCATCACCACCATCGACGGTCTCG ACATCCAGTTCATCCACATCCGCTCGAAGCATAAGGGTGCGATGCCGCTGCTCATGACGCACGGCTGGCCCGGCTCACCG TTCGAGCTGCTGAAAACCGTCGGACCGCTTACCGATCCGACCGCGCACGGCGGGAAGGCCGAAGACGCCTTCGACCTGAT CATGCCGACCTATCCGGGTTATGGGTTTTCCGGCAAGCCGAACGAGGCATGGGATCCGGCCCGGGTGGCGCGCGCCTGGG ATGTGCTGATGAAGCGTCTCGGCTACAAGAATTATGTGTCGCAGGGCGGCGATTGGGGCGCGATCATTTCGCAGGTGCTG GCCGTGCAGGCACCCGAAGGATTGCTTGGCATCCATACCAATATGCCGGGCACCGTTCCGCCGGGCGTTCTCAAGCTCGT CCGCGCCAAGCAACCGGCTCCGGACAGCTATTCTCCCGAAGAGAAGATCGCCTACGCCGGTCTCGAGACCTTCTACGGCA AGGGCTTCGGCTATGCCGAAATGATGAACACGCGCCCGCAGACGCTCGGCTACGGCCTGTCGGACTCTCCGGTCGGGCTT GCAGCTTTCCTCTACGAGAAGATCGCGACCTGGACGGATAGCGGTGGCAATCCCGAAAGCGTGCTGACGCGCGACGAGAT ACTCGACAACATCACCCTTTACTGGCTGACCAACACCGGAACCTCGTCATCGCGCAGCTATTGGGATGCCGCGCAGGGCC CGGGCGGTCCGTTCAACGCGATCGAGATCAGCAAGGTGCCGGTCGCGGTGACCGTCTTCCCCGGCGAGATCTATCGCGCG CCGCGCAGCTGGGGCGAAAAGAGCTTCAAGAAGCTCATCTACTGGAACGAGGTCGACAAGGGCGGTCATTTCGCCGCCTG GGAACAGCCCGAGCTGTTCGCTGCCGAGATCCGCGCCGCCTTCCGCCCCTTGCGCGAGAAGAAGTGA
Upstream 100 bases:
>100_bases ATGCTCCCCAATCTGTCGCTGACCAACCCGGCCGATCGATATCGGGCCGTTGCCGCCGCCGCTTGAACGCCCTCGACCAG TCCGAAACAGGAGAAAGACT
Downstream 100 bases:
>100_bases ACGACTGACGACCCCCTCATCAAAGGAACAAGATCATGAGCAAGCCCGACAAGATCCTCTACACCGCCAAGACCCACACC ACCGGAGGCCGCGATGGCAA
Product: epoxide hydrolase-like protein
Products: NA
Alternate protein names: Epoxide hydratase [H]
Number of amino acids: Translated: 448; Mature: 447
Protein sequence:
>448_residues MSPAKSISLRRLLSTAISVAALGMTLQSSPSFASSAGPSTAITVSAAAAVAAPQDESIRPFHVSIPEEALTDLRRRLAET RWPDREKVSDASQGVQLDRLEPLVRYWGTDYDWRKGEARLNAVPQFITTIDGLDIQFIHIRSKHKGAMPLLMTHGWPGSP FELLKTVGPLTDPTAHGGKAEDAFDLIMPTYPGYGFSGKPNEAWDPARVARAWDVLMKRLGYKNYVSQGGDWGAIISQVL AVQAPEGLLGIHTNMPGTVPPGVLKLVRAKQPAPDSYSPEEKIAYAGLETFYGKGFGYAEMMNTRPQTLGYGLSDSPVGL AAFLYEKIATWTDSGGNPESVLTRDEILDNITLYWLTNTGTSSSRSYWDAAQGPGGPFNAIEISKVPVAVTVFPGEIYRA PRSWGEKSFKKLIYWNEVDKGGHFAAWEQPELFAAEIRAAFRPLREKK
Sequences:
>Translated_448_residues MSPAKSISLRRLLSTAISVAALGMTLQSSPSFASSAGPSTAITVSAAAAVAAPQDESIRPFHVSIPEEALTDLRRRLAET RWPDREKVSDASQGVQLDRLEPLVRYWGTDYDWRKGEARLNAVPQFITTIDGLDIQFIHIRSKHKGAMPLLMTHGWPGSP FELLKTVGPLTDPTAHGGKAEDAFDLIMPTYPGYGFSGKPNEAWDPARVARAWDVLMKRLGYKNYVSQGGDWGAIISQVL AVQAPEGLLGIHTNMPGTVPPGVLKLVRAKQPAPDSYSPEEKIAYAGLETFYGKGFGYAEMMNTRPQTLGYGLSDSPVGL AAFLYEKIATWTDSGGNPESVLTRDEILDNITLYWLTNTGTSSSRSYWDAAQGPGGPFNAIEISKVPVAVTVFPGEIYRA PRSWGEKSFKKLIYWNEVDKGGHFAAWEQPELFAAEIRAAFRPLREKK >Mature_447_residues SPAKSISLRRLLSTAISVAALGMTLQSSPSFASSAGPSTAITVSAAAAVAAPQDESIRPFHVSIPEEALTDLRRRLAETR WPDREKVSDASQGVQLDRLEPLVRYWGTDYDWRKGEARLNAVPQFITTIDGLDIQFIHIRSKHKGAMPLLMTHGWPGSPF ELLKTVGPLTDPTAHGGKAEDAFDLIMPTYPGYGFSGKPNEAWDPARVARAWDVLMKRLGYKNYVSQGGDWGAIISQVLA VQAPEGLLGIHTNMPGTVPPGVLKLVRAKQPAPDSYSPEEKIAYAGLETFYGKGFGYAEMMNTRPQTLGYGLSDSPVGLA AFLYEKIATWTDSGGNPESVLTRDEILDNITLYWLTNTGTSSSRSYWDAAQGPGGPFNAIEISKVPVAVTVFPGEIYRAP RSWGEKSFKKLIYWNEVDKGGHFAAWEQPELFAAEIRAAFRPLREKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S33 family [H]
Homologues:
Organism=Homo sapiens, GI4503583, Length=421, Percent_Identity=36.104513064133, Blast_Score=255, Evalue=5e-68, Organism=Homo sapiens, GI209862837, Length=421, Percent_Identity=36.104513064133, Blast_Score=255, Evalue=5e-68, Organism=Caenorhabditis elegans, GI17564944, Length=419, Percent_Identity=33.1742243436754, Blast_Score=228, Evalue=4e-60, Organism=Caenorhabditis elegans, GI193207462, Length=414, Percent_Identity=26.0869565217391, Blast_Score=121, Evalue=7e-28, Organism=Drosophila melanogaster, GI24655327, Length=405, Percent_Identity=32.5925925925926, Blast_Score=194, Evalue=1e-49, Organism=Drosophila melanogaster, GI20130139, Length=402, Percent_Identity=32.089552238806, Blast_Score=187, Evalue=2e-47, Organism=Drosophila melanogaster, GI19922580, Length=419, Percent_Identity=29.8329355608592, Blast_Score=175, Evalue=7e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: =3.3.2.10 [H]
Molecular weight: Translated: 49031; Mature: 48900
Theoretical pI: Translated: 7.25; Mature: 7.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPAKSISLRRLLSTAISVAALGMTLQSSPSFASSAGPSTAITVSAAAAVAAPQDESIRP CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCC FHVSIPEEALTDLRRRLAETRWPDREKVSDASQGVQLDRLEPLVRYWGTDYDWRKGEARL EEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHH NAVPQFITTIDGLDIQFIHIRSKHKGAMPLLMTHGWPGSPFELLKTVGPLTDPTAHGGKA HHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCC EDAFDLIMPTYPGYGFSGKPNEAWDPARVARAWDVLMKRLGYKNYVSQGGDWGAIISQVL CCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHH AVQAPEGLLGIHTNMPGTVPPGVLKLVRAKQPAPDSYSPEEKIAYAGLETFYGKGFGYAE HHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHH MMNTRPQTLGYGLSDSPVGLAAFLYEKIATWTDSGGNPESVLTRDEILDNITLYWLTNTG HHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCC TSSSRSYWDAAQGPGGPFNAIEISKVPVAVTVFPGEIYRAPRSWGEKSFKKLIYWNEVDK CCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECHHHHHCCHHHHHHHHHHHHEECCCCC GGHFAAWEQPELFAAEIRAAFRPLREKK CCCCCCCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SPAKSISLRRLLSTAISVAALGMTLQSSPSFASSAGPSTAITVSAAAAVAAPQDESIRP CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCC FHVSIPEEALTDLRRRLAETRWPDREKVSDASQGVQLDRLEPLVRYWGTDYDWRKGEARL EEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHH NAVPQFITTIDGLDIQFIHIRSKHKGAMPLLMTHGWPGSPFELLKTVGPLTDPTAHGGKA HHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCC EDAFDLIMPTYPGYGFSGKPNEAWDPARVARAWDVLMKRLGYKNYVSQGGDWGAIISQVL CCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHH AVQAPEGLLGIHTNMPGTVPPGVLKLVRAKQPAPDSYSPEEKIAYAGLETFYGKGFGYAE HHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHH MMNTRPQTLGYGLSDSPVGLAAFLYEKIATWTDSGGNPESVLTRDEILDNITLYWLTNTG HHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCC TSSSRSYWDAAQGPGGPFNAIEISKVPVAVTVFPGEIYRAPRSWGEKSFKKLIYWNEVDK CCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECHHHHHCCHHHHHHHHHHHHEECCCCC GGHFAAWEQPELFAAEIRAAFRPLREKK CCCCCCCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226695 [H]