| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is engB
Identifier: 103485501
GI number: 103485501
Start: 2549
End: 3208
Strand: Reverse
Name: engB
Synonym: Sala_0003
Alternate gene names: 103485501
Gene position: 3208-2549 (Counterclockwise)
Preceding gene: 103485502
Following gene: 103485500
Centisome position: 0.1
GC content: 65.0
Gene sequence:
>660_bases GTGAGCGAGATCGAACTCGAACCCGGTGCGGATCCCGAACGGGCGGAGCGCGCGCGCAAGCTGTTTTCAGGCCCGATCGC CTTCCTGAAATCGGCGCCCGCGCTTCAGCATCTGCCTGTGCCGTCGGTGCCGGAGATTGCCTTTGCGGGTCGATCGAACG TCGGCAAATCGTCGCTGCTCAACGCGCTGACCAACCGCAACGGCCTCGCGCGCACCTCGGTCACGCCGGGACGCACGCAG GAACTCAACTATTTCGACGTGGGCGAACCGCCGGTGTTCCGCCTCGTCGACATGCCCGGTTACGGCTTTGCCAAGGCGCC GAAGGATGTCGTCAGGAAATGGCGCTTCCTGATCAACGATTACCTCCGCGGACGGCAGGTGCTGAAACGCACATTGGTGC TGATCGACAGCCGCCACGGCATCAAGGATGTCGACCGCGATGTGCTCGAAATGCTCGACACCGCGGCGGTGAGCTACCGC CTCGTGCTCACCAAGGCCGACAAGATCAAGGCGAGCGCGCTCGCCGACGTCCATGCCGCGACCGAGGCCGAGGCGCGCAA ACACCCCGCCGCGCACCCCGAGGTGATTGCGACGAGCAGCGAGAAAGGCATGGGGATCGCCGAACTGCGCACCGCGGTGC TGGAGGCGGTGGAATTATAG
Upstream 100 bases:
>100_bases CGGGCCTGCTGCTTTACTGGATCACCAACAATATCCTGTCGATCGGGCAGCAGCAGTGGATGTATCGCAAGTTCCCGGCG CTGAAGGCGGCGCCGGCGAA
Downstream 100 bases:
>100_bases ATGATCCTCTCCCCTTGCGGGAGAGGATGGTGAAGGTTGCGGACTGGTCCGCTACCGTAACCTGGAGAGGGGGAAGCGGC CCGCCGGGCCGCGGCGAGCC
Product: ribosome biogenesis GTP-binding protein YsxC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 219; Mature: 218
Protein sequence:
>219_residues MSEIELEPGADPERAERARKLFSGPIAFLKSAPALQHLPVPSVPEIAFAGRSNVGKSSLLNALTNRNGLARTSVTPGRTQ ELNYFDVGEPPVFRLVDMPGYGFAKAPKDVVRKWRFLINDYLRGRQVLKRTLVLIDSRHGIKDVDRDVLEMLDTAAVSYR LVLTKADKIKASALADVHAATEAEARKHPAAHPEVIATSSEKGMGIAELRTAVLEAVEL
Sequences:
>Translated_219_residues MSEIELEPGADPERAERARKLFSGPIAFLKSAPALQHLPVPSVPEIAFAGRSNVGKSSLLNALTNRNGLARTSVTPGRTQ ELNYFDVGEPPVFRLVDMPGYGFAKAPKDVVRKWRFLINDYLRGRQVLKRTLVLIDSRHGIKDVDRDVLEMLDTAAVSYR LVLTKADKIKASALADVHAATEAEARKHPAAHPEVIATSSEKGMGIAELRTAVLEAVEL >Mature_218_residues SEIELEPGADPERAERARKLFSGPIAFLKSAPALQHLPVPSVPEIAFAGRSNVGKSSLLNALTNRNGLARTSVTPGRTQE LNYFDVGEPPVFRLVDMPGYGFAKAPKDVVRKWRFLINDYLRGRQVLKRTLVLIDSRHGIKDVDRDVLEMLDTAAVSYRL VLTKADKIKASALADVHAATEAEARKHPAAHPEVIATSSEKGMGIAELRTAVLEAVEL
Specific function: Necessary for normal cell division and for the maintenance of normal septation
COG id: COG0218
COG function: function code R; Predicted GTPase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain
Homologues:
Organism=Homo sapiens, GI56549685, Length=212, Percent_Identity=38.6792452830189, Blast_Score=119, Evalue=3e-27, Organism=Homo sapiens, GI56549687, Length=138, Percent_Identity=37.6811594202899, Blast_Score=83, Evalue=2e-16, Organism=Escherichia coli, GI145693205, Length=184, Percent_Identity=44.5652173913043, Blast_Score=147, Evalue=4e-37, Organism=Saccharomyces cerevisiae, GI6320543, Length=192, Percent_Identity=29.1666666666667, Blast_Score=78, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): ENGB_SPHAL (Q1GN74)
Other databases:
- EMBL: CP000356 - RefSeq: YP_615062.1 - ProteinModelPortal: Q1GN74 - SMR: Q1GN74 - GeneID: 4083134 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_0003 - NMPDR: fig|317655.9.peg.3 - HOGENOM: HBG447097 - OMA: RTQELIF - ProtClustDB: PRK00454 - BioCyc: SALA317655:SALA_0003-MONOMER - GO: GO:0005622 - HAMAP: MF_00321 - InterPro: IPR019987 - InterPro: IPR002917 - TIGRFAMs: TIGR03598
Pfam domain/function: PF01926 MMR_HSR1
EC number: NA
Molecular weight: Translated: 23944; Mature: 23813
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEIELEPGADPERAERARKLFSGPIAFLKSAPALQHLPVPSVPEIAFAGRSNVGKSSLL CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCEEECCCCCCCHHHHH NALTNRNGLARTSVTPGRTQELNYFDVGEPPVFRLVDMPGYGFAKAPKDVVRKWRFLIND HHHHCCCCCEECCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH YLRGRQVLKRTLVLIDSRHGIKDVDRDVLEMLDTAAVSYRLVLTKADKIKASALADVHAA HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHH TEAEARKHPAAHPEVIATSSEKGMGIAELRTAVLEAVEL HHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure SEIELEPGADPERAERARKLFSGPIAFLKSAPALQHLPVPSVPEIAFAGRSNVGKSSLL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCEEECCCCCCCHHHHH NALTNRNGLARTSVTPGRTQELNYFDVGEPPVFRLVDMPGYGFAKAPKDVVRKWRFLIND HHHHCCCCCEECCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH YLRGRQVLKRTLVLIDSRHGIKDVDRDVLEMLDTAAVSYRLVLTKADKIKASALADVHAA HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHH TEAEARKHPAAHPEVIATSSEKGMGIAELRTAVLEAVEL HHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA