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The map label for this gene is potC [H]

Identifier: 99082830

GI number: 99082830

Start: 3156106

End: 3157281

Strand: Direct

Name: potC [H]

Synonym: TM1040_2990

Alternate gene names: 99082830

Gene position: 3156106-3157281 (Clockwise)

Preceding gene: 99082829

Following gene: 99082833

Centisome position: 98.6

GC content: 58.16

Gene sequence:

>1176_bases
ATGGCACTTACACCTGTTCAAAACCAAACCCCCGCTTTCACCGCCGCAGTGTCGGCCGGCGCAGGGGCCTTCTTTGGCCT
CTTCGTGGGTACAGCTCAGGGATCGGGCCTGCTTGGCCTGGTCATCGGAGCGGTCCTTCTAGGCGCACTCGGATTTGTGT
TCGCATCTATGACAGCGCAGGAAAAACCGATCCGCTGGGCCGTTCTGGTCGCTTTTGCGATTGCTGGCTTTGTGCTCGGC
GGCCTTCCTGCGTTGGTGATCGGCGCGCTCTTTGGCTGGTTCGCTGGCTGGTTCATCTTCTGGCTTGCCACATCGCGCTA
TCGCGCAACCCTCGTTCCGTATCTGACACCGGGGCAAGTGCTTTGGCACTATACGTTCCGGGTCATCTGTGGTGCGATCT
TTGTGTTCCTGATCACGCCGATCCTTGTTGTGATGCCGCTGTCGTTCAACGCGGAAGACTTCTTTACCTTCACGCCGGAA
ATGCTGCGGTTTGATCCCGAAGGCTACTCACTCAAGCACTATCGCGACTTCTTCACGAATGCGGACTGGCAGCAGGCGCT
GTGGAATTCGCTTTCGATTGCTCCGATGGCGACGCTCCTGTCCGTGGGTTTTGGAACGCTGGCCGCAATCGGTCTCAGCC
AGCCTCATGTGCCTTTCCGTCGCGCGATCATGGCGATCCTGATTTCGCCGATGATTGTGCCGCTGATCATTTCGGCTGCG
GGCATGTACTTTTTCTACAGCCGGATCGGCCTGCAGGGCACCTACTTTGGCGTGGTTCTGGCGCATGCGGCACTGGGCAT
TCCCTTTGTGATTATCACCGTGACCGCGACGCTTGTGGGATTTGACCGTTCTTTGACCCGCGCTGCGGCGAACATGGGCG
CTGGTCCTGTGACCACGTTCTTCCGGGTGCAGATGCCGCTCATTTTGCCTGGCGTGATTTCGGGTGGCCTTTTTGCATTC
ATCACGTCGTTCGACGAAGTGGTCGTGGTGCTCTTTGTCGGCTCGGCAGGTCAGAAAACGCTACCATGGCAGATGTTTAC
TGGCCTACGTGAGCAGATCTCGCCCACGATCCTTGCAGTCGCAACAATCCTAGTGGTGATCTCGATCTGTCTGCTGACCA
CCGTGGAGATGCTGCGGCGGCGGAGTGAACGGCTTCGAGGCATGAGCCCGAGCTAA

Upstream 100 bases:

>100_bases
GCGGCACTCGGGACAATCCTGCTGGTGGTGGTTCTGGTGCTCTACTGGGCCTACGACAAGATCGTCGGCATCGACAACGT
GAAGCTGGGATAAGAAAAAC

Downstream 100 bases:

>100_bases
CCTGCAAGAACAACAAAGCCCCGCTCTTCAGCGGGGCTTTGTTGTGATGTTCGGTGAGTGAGTTTTAGCGGAGCTTCTCC
AGAAGAGACAACGATGCATA

Product: binding-protein-dependent transport systems inner membrane component

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MALTPVQNQTPAFTAAVSAGAGAFFGLFVGTAQGSGLLGLVIGAVLLGALGFVFASMTAQEKPIRWAVLVAFAIAGFVLG
GLPALVIGALFGWFAGWFIFWLATSRYRATLVPYLTPGQVLWHYTFRVICGAIFVFLITPILVVMPLSFNAEDFFTFTPE
MLRFDPEGYSLKHYRDFFTNADWQQALWNSLSIAPMATLLSVGFGTLAAIGLSQPHVPFRRAIMAILISPMIVPLIISAA
GMYFFYSRIGLQGTYFGVVLAHAALGIPFVIITVTATLVGFDRSLTRAAANMGAGPVTTFFRVQMPLILPGVISGGLFAF
ITSFDEVVVVLFVGSAGQKTLPWQMFTGLREQISPTILAVATILVVISICLLTTVEMLRRRSERLRGMSPS

Sequences:

>Translated_391_residues
MALTPVQNQTPAFTAAVSAGAGAFFGLFVGTAQGSGLLGLVIGAVLLGALGFVFASMTAQEKPIRWAVLVAFAIAGFVLG
GLPALVIGALFGWFAGWFIFWLATSRYRATLVPYLTPGQVLWHYTFRVICGAIFVFLITPILVVMPLSFNAEDFFTFTPE
MLRFDPEGYSLKHYRDFFTNADWQQALWNSLSIAPMATLLSVGFGTLAAIGLSQPHVPFRRAIMAILISPMIVPLIISAA
GMYFFYSRIGLQGTYFGVVLAHAALGIPFVIITVTATLVGFDRSLTRAAANMGAGPVTTFFRVQMPLILPGVISGGLFAF
ITSFDEVVVVLFVGSAGQKTLPWQMFTGLREQISPTILAVATILVVISICLLTTVEMLRRRSERLRGMSPS
>Mature_390_residues
ALTPVQNQTPAFTAAVSAGAGAFFGLFVGTAQGSGLLGLVIGAVLLGALGFVFASMTAQEKPIRWAVLVAFAIAGFVLGG
LPALVIGALFGWFAGWFIFWLATSRYRATLVPYLTPGQVLWHYTFRVICGAIFVFLITPILVVMPLSFNAEDFFTFTPEM
LRFDPEGYSLKHYRDFFTNADWQQALWNSLSIAPMATLLSVGFGTLAAIGLSQPHVPFRRAIMAILISPMIVPLIISAAG
MYFFYSRIGLQGTYFGVVLAHAALGIPFVIITVTATLVGFDRSLTRAAANMGAGPVTTFFRVQMPLILPGVISGGLFAFI
TSFDEVVVVLFVGSAGQKTLPWQMFTGLREQISPTILAVATILVVISICLLTTVEMLRRRSERLRGMSPS

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=229, Percent_Identity=26.6375545851528, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787081, Length=265, Percent_Identity=28.3018867924528, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787714, Length=235, Percent_Identity=29.7872340425532, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 42191; Mature: 42059

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTPVQNQTPAFTAAVSAGAGAFFGLFVGTAQGSGLLGLVIGAVLLGALGFVFASMTAQ
CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
EKPIRWAVLVAFAIAGFVLGGLPALVIGALFGWFAGWFIFWLATSRYRATLVPYLTPGQV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHH
LWHYTFRVICGAIFVFLITPILVVMPLSFNAEDFFTFTPEMLRFDPEGYSLKHYRDFFTN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEECHHHHEECCCCCCHHHHHHHHCC
ADWQQALWNSLSIAPMATLLSVGFGTLAAIGLSQPHVPFRRAIMAILISPMIVPLIISAA
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GMYFFYSRIGLQGTYFGVVLAHAALGIPFVIITVTATLVGFDRSLTRAAANMGAGPVTTF
HHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
FRVQMPLILPGVISGGLFAFITSFDEVVVVLFVGSAGQKTLPWQMFTGLREQISPTILAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
ATILVVISICLLTTVEMLRRRSERLRGMSPS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ALTPVQNQTPAFTAAVSAGAGAFFGLFVGTAQGSGLLGLVIGAVLLGALGFVFASMTAQ
CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
EKPIRWAVLVAFAIAGFVLGGLPALVIGALFGWFAGWFIFWLATSRYRATLVPYLTPGQV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHH
LWHYTFRVICGAIFVFLITPILVVMPLSFNAEDFFTFTPEMLRFDPEGYSLKHYRDFFTN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEECHHHHEECCCCCCHHHHHHHHCC
ADWQQALWNSLSIAPMATLLSVGFGTLAAIGLSQPHVPFRRAIMAILISPMIVPLIISAA
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GMYFFYSRIGLQGTYFGVVLAHAALGIPFVIITVTATLVGFDRSLTRAAANMGAGPVTTF
HHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
FRVQMPLILPGVISGGLFAFITSFDEVVVVLFVGSAGQKTLPWQMFTGLREQISPTILAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
ATILVVISICLLTTVEMLRRRSERLRGMSPS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]