Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082833

Identifier: 99082833

GI number: 99082833

Start: 3159600

End: 3160313

Strand: Direct

Name: 99082833

Synonym: TM1040_2993

Alternate gene names: NA

Gene position: 3159600-3160313 (Clockwise)

Preceding gene: 99082830

Following gene: 99082837

Centisome position: 98.71

GC content: 60.36

Gene sequence:

>714_bases
ATGTTGACCCTTATGACCCATGGCGGCGGTGACGGATTTTACAGCTACAGCATGTTTTGCACCAAGGCGGCGCTGTTGCT
GCAGATGTCAGGTGCGACCTGGCAACGGCAGGATGTTTTTGATCCGGCGGAGCTCGACGCGATGCCGCACCAAAAGCTTC
CGGTGGTGCGGGACGAGACTGACGCCTTGATCCCCGACAGCGAAGGCATCCGCCGTTTTCTCGAAGCCAAAGGCGCGAAC
TTCGACCAAGGTCTTAGCGCCGCTCAAAAGGGCCAGTCCCGCGCGCTCATCCGCATGATCGACGAATCGCTCTGGACACA
GTTGATGTGCGCGCGCTGGCTCGAAGACGAAGGCTGGGCCGGGATGCTGCAGTCAGTGTTTGCAGGGGTGCCCGAAGAGC
CGCTGAACCTCTTTCGCGAGAAGGTGGTTGAAGGGCTTCATTTCACTGGGCACTCGCGTTTTGATCGTGCGGAACGCCTG
CAGCGTCTGGAGCAGGATCTTTGCGCGCTCGAAGATTTTCTTGGCGATCAGCACTTCTTGTTCGGTGATCATATGACGGC
AGCGGATTGTTCTGCGGCACCGATGCTCGAGGCGCTGTCCCGCGCTCCCGCCGCGCCGCAGGTGGTTGAGGTCACGCGAC
GCCACGGAAAGCTCCTGGCCTATGTCACACGCGTGCTGGATCGTGGCGCGCTCGAATTGCCCCAAGCTGCATAA

Upstream 100 bases:

>100_bases
TCGGTTTTTGTCATCTGTCTAGTGTGGAGTCCGCTAATGACAAAAACTGTCAATAGCGCCTTGTAGCACGGTCTCATCAT
AATCCAAACGGAGAGAGACG

Downstream 100 bases:

>100_bases
AGTGTTGGGAATGCGACGCGAATATTGATCCCATGGGCGGGGCTCTCCCGCCCGTGGCTCCTGCACTCTGGATGCAAGGG
CCTCGATTTGGCTGGGCAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MLTLMTHGGGDGFYSYSMFCTKAALLLQMSGATWQRQDVFDPAELDAMPHQKLPVVRDETDALIPDSEGIRRFLEAKGAN
FDQGLSAAQKGQSRALIRMIDESLWTQLMCARWLEDEGWAGMLQSVFAGVPEEPLNLFREKVVEGLHFTGHSRFDRAERL
QRLEQDLCALEDFLGDQHFLFGDHMTAADCSAAPMLEALSRAPAAPQVVEVTRRHGKLLAYVTRVLDRGALELPQAA

Sequences:

>Translated_237_residues
MLTLMTHGGGDGFYSYSMFCTKAALLLQMSGATWQRQDVFDPAELDAMPHQKLPVVRDETDALIPDSEGIRRFLEAKGAN
FDQGLSAAQKGQSRALIRMIDESLWTQLMCARWLEDEGWAGMLQSVFAGVPEEPLNLFREKVVEGLHFTGHSRFDRAERL
QRLEQDLCALEDFLGDQHFLFGDHMTAADCSAAPMLEALSRAPAAPQVVEVTRRHGKLLAYVTRVLDRGALELPQAA
>Mature_237_residues
MLTLMTHGGGDGFYSYSMFCTKAALLLQMSGATWQRQDVFDPAELDAMPHQKLPVVRDETDALIPDSEGIRRFLEAKGAN
FDQGLSAAQKGQSRALIRMIDESLWTQLMCARWLEDEGWAGMLQSVFAGVPEEPLNLFREKVVEGLHFTGHSRFDRAERL
QRLEQDLCALEDFLGDQHFLFGDHMTAADCSAAPMLEALSRAPAAPQVVEVTRRHGKLLAYVTRVLDRGALELPQAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26408; Mature: 26408

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLMTHGGGDGFYSYSMFCTKAALLLQMSGATWQRQDVFDPAELDAMPHQKLPVVRDET
CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHCCCCCCCCCCEECCC
DALIPDSEGIRRFLEAKGANFDQGLSAAQKGQSRALIRMIDESLWTQLMCARWLEDEGWA
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
GMLQSVFAGVPEEPLNLFREKVVEGLHFTGHSRFDRAERLQRLEQDLCALEDFLGDQHFL
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
FGDHMTAADCSAAPMLEALSRAPAAPQVVEVTRRHGKLLAYVTRVLDRGALELPQAA
ECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLTLMTHGGGDGFYSYSMFCTKAALLLQMSGATWQRQDVFDPAELDAMPHQKLPVVRDET
CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHCCCCCCCCCCEECCC
DALIPDSEGIRRFLEAKGANFDQGLSAAQKGQSRALIRMIDESLWTQLMCARWLEDEGWA
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
GMLQSVFAGVPEEPLNLFREKVVEGLHFTGHSRFDRAERLQRLEQDLCALEDFLGDQHFL
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
FGDHMTAADCSAAPMLEALSRAPAAPQVVEVTRRHGKLLAYVTRVLDRGALELPQAA
ECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA