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The map label for this gene is glxA [H]

Identifier: 99082637

GI number: 99082637

Start: 2958859

End: 2959806

Strand: Direct

Name: glxA [H]

Synonym: TM1040_2797

Alternate gene names: 99082637

Gene position: 2958859-2959806 (Clockwise)

Preceding gene: 99082632

Following gene: 99082639

Centisome position: 92.44

GC content: 60.97

Gene sequence:

>948_bases
ATGCAGAAATGGACAAATGATCTTGCCACAGCGAGCCAGGTGGACATTCTCCTCTTTGATGACTTTTCCGGTCATTGCCT
CGCAAATACCGTGGAGCCGATGCGTGCCGCCAATACGCTAGCAGGGCGCGAACTCTACCGGTGGCGATTTCTATCACTGA
ACAGCAGCCGTGTCGTTTCATCCTCCGGCATGGAGGTGACGGCCCATGCGCAACTGGCAGACTGCCGCGGGGACATGCTG
GCCGTGATGCCAAGCTACAACTTTCTGCGCCATGATACGCCAGAAACCCGGCGCGCCCTCCGTGCTGCGGCCATGCGCTA
TCGCGAGTTGGCGGGGCTGGATACCGGTCCCTGGCTTCTGGCCGCAGCGGGCTTGCTGGATGGGCGACGGGCAACCATTC
ATTGGGACGAGTTGGAGCGGTTGGCGGAGGCCTACCCCGACATTGACGTCCAGCGCAGCCGCTACGTGCTTGATGGGAAT
AGGATCACCTGTACCGGCGCGCTCGCGGCGTTTGATCTGATGCTGGAGCGGATCGGCATCGCTCATGGTCAAGCGCTGCG
GCTGGAGGTTGCGGCCCTGTTTATGTCCACCGAAGGCAGCGGCCCCACACCGGAATCGATGCTGGCACGCACAAAGGTCG
TGGCCCGTGCCGTCGGGGTGATGCAAGCGCATGTCGAGGAGCCGCTCTCGATCCCGGAGATCGCTCGGCAAATCGGCCGT
TCGCGCAAGGATCTTGAGGCACGCATGAAATCCGATCTGGGCGCCACTCCTGCAAAAGTCTATCGACGGCTGCGCCTCAT
TCAGGCTCGAAAGCTCATATTAGAGACTGATATTGGCATCTCAGAGGTTGCGACCCGCACCGGATATGAAAATCCGAGCG
CGCTGACACGGGCTTTTCGAGTTGAATTCGGAACAACACCCCGCGCCCTGCGCGCCCCGACCTCGTGA

Upstream 100 bases:

>100_bases
TCATCCCAAAATGCACGAGCTCTCTCCTTGTTGGCGTATCTGCTTGCTCCACACCCTATCCTTGGCGTAGCGTCCAGATC
GTGCAGATAAGGCGAATTTC

Downstream 100 bases:

>100_bases
CGTCAGCCACCGGTCTTTCTTACCCTAGGTATCAACCACGCGCCCTTAGGCCATTAAAACCGAGGCCTCCTGCGATTTGC
CGTCCAAAAGCTCGAGCACC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MQKWTNDLATASQVDILLFDDFSGHCLANTVEPMRAANTLAGRELYRWRFLSLNSSRVVSSSGMEVTAHAQLADCRGDML
AVMPSYNFLRHDTPETRRALRAAAMRYRELAGLDTGPWLLAAAGLLDGRRATIHWDELERLAEAYPDIDVQRSRYVLDGN
RITCTGALAAFDLMLERIGIAHGQALRLEVAALFMSTEGSGPTPESMLARTKVVARAVGVMQAHVEEPLSIPEIARQIGR
SRKDLEARMKSDLGATPAKVYRRLRLIQARKLILETDIGISEVATRTGYENPSALTRAFRVEFGTTPRALRAPTS

Sequences:

>Translated_315_residues
MQKWTNDLATASQVDILLFDDFSGHCLANTVEPMRAANTLAGRELYRWRFLSLNSSRVVSSSGMEVTAHAQLADCRGDML
AVMPSYNFLRHDTPETRRALRAAAMRYRELAGLDTGPWLLAAAGLLDGRRATIHWDELERLAEAYPDIDVQRSRYVLDGN
RITCTGALAAFDLMLERIGIAHGQALRLEVAALFMSTEGSGPTPESMLARTKVVARAVGVMQAHVEEPLSIPEIARQIGR
SRKDLEARMKSDLGATPAKVYRRLRLIQARKLILETDIGISEVATRTGYENPSALTRAFRVEFGTTPRALRAPTS
>Mature_315_residues
MQKWTNDLATASQVDILLFDDFSGHCLANTVEPMRAANTLAGRELYRWRFLSLNSSRVVSSSGMEVTAHAQLADCRGDML
AVMPSYNFLRHDTPETRRALRAAAMRYRELAGLDTGPWLLAAAGLLDGRRATIHWDELERLAEAYPDIDVQRSRYVLDGN
RITCTGALAAFDLMLERIGIAHGQALRLEVAALFMSTEGSGPTPESMLARTKVVARAVGVMQAHVEEPLSIPEIARQIGR
SRKDLEARMKSDLGATPAKVYRRLRLIQARKLILETDIGISEVATRTGYENPSALTRAFRVEFGTTPRALRAPTS

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34867; Mature: 34867

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKWTNDLATASQVDILLFDDFSGHCLANTVEPMRAANTLAGRELYRWRFLSLNSSRVVS
CCCHHHHHCCHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEC
SSGMEVTAHAQLADCRGDMLAVMPSYNFLRHDTPETRRALRAAAMRYRELAGLDTGPWLL
CCCCEEEECHHHHHCCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
AAAGLLDGRRATIHWDELERLAEAYPDIDVQRSRYVLDGNRITCTGALAAFDLMLERIGI
HHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCCCEEEEECCEEEEHHHHHHHHHHHHHHCC
AHGQALRLEVAALFMSTEGSGPTPESMLARTKVVARAVGVMQAHVEEPLSIPEIARQIGR
CCCCHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
SRKDLEARMKSDLGATPAKVYRRLRLIQARKLILETDIGISEVATRTGYENPSALTRAFR
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHH
VEFGTTPRALRAPTS
HCCCCCCCCCCCCCC
>Mature Secondary Structure
MQKWTNDLATASQVDILLFDDFSGHCLANTVEPMRAANTLAGRELYRWRFLSLNSSRVVS
CCCHHHHHCCHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEC
SSGMEVTAHAQLADCRGDMLAVMPSYNFLRHDTPETRRALRAAAMRYRELAGLDTGPWLL
CCCCEEEECHHHHHCCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
AAAGLLDGRRATIHWDELERLAEAYPDIDVQRSRYVLDGNRITCTGALAAFDLMLERIGI
HHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCCCEEEEECCEEEEHHHHHHHHHHHHHHCC
AHGQALRLEVAALFMSTEGSGPTPESMLARTKVVARAVGVMQAHVEEPLSIPEIARQIGR
CCCCHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
SRKDLEARMKSDLGATPAKVYRRLRLIQARKLILETDIGISEVATRTGYENPSALTRAFR
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHH
VEFGTTPRALRAPTS
HCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]