| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is mhpD [H]
Identifier: 99082611
GI number: 99082611
Start: 2922245
End: 2923147
Strand: Reverse
Name: mhpD [H]
Synonym: TM1040_2771
Alternate gene names: 99082611
Gene position: 2923147-2922245 (Counterclockwise)
Preceding gene: 99082612
Following gene: 99082606
Centisome position: 91.32
GC content: 60.58
Gene sequence:
>903_bases ATGCGCTGGCTTGAGGAGAAAAGAGGCATTTCGTTGAGAACATCGGGTCTGGTTGGAATCCTGACGATGAGCGTAGCTCT GACCCTTGGAACAGATATTGCCCGGGCTGAATGCGCAAGCGAAGAAGAAGTTGCGCAGTTCGTGTCCGCCTATGTTGACC GCCAGCCCGCGACCGCGCTTGGCGCAGGGGGGAGCATGGTGGATGCGCTCTGCACACAAGCGCGGGTCGCAGAAGCGCTC TCGGAACACTTCGGCCCGGTGATTGGGTATAAGGCGGGATTGACCAGCGCGGCGGCACAGGCGCGTTTCGAGGCCAGCGA ACCGGTTCGTGGTGTGCTTTATCGTGACATGATGCTGGAGAGTGGCGCGACGATCGAGATGCCTTGGGGCACGGTGCCCA TGGTGGAAGCGGATCTGGTTCTTGAGATCGGAGACTCGGCGGTGAACTGGGCCACCACCCCCGAGGAAGTGATGCAGAAT ATCAAAAGCATCCGGCCCTTTATCGAGTTGCCGGATCTGGCTTTGGCACCGGGTGAGCCGATGACGGTCGAGACGATCAC CGCAATGGGAGTTGGTGCGCGCAAAGGCGTCTTGGGTGCAGAGGTGCCCGTCACGGATCCCACCGCGCTCACAGCGGCGT TGGCGGAAATGACCGTGACTCTGCGCGACGGCACAGGTGATACGGTTGTCTCTGCTTCGGGTACCGCTGTTTTGGGCCAT CCTGCAGAGACGATCCTTTGGCTGCACGAGGTGGGCGTGACCTTCAAGGCCGGTGATTTGGTCTCTGTCGGCTCTTTTGG TCCCTTGGTGCCTCCGGCAGATCTTAGAGGAGGCGCGTCGGTGATCTATATGGGGCTGCCGGGGGATCCGGAGGTCTCCA TTCGTTTTGCGCCGACATCCTGA
Upstream 100 bases:
>100_bases TCGACCTTCCGAGCCCCGGGCCGGGCCATGCAACGCTTGTGGTGATCGATGCAGACGGGCAATCTGCACGGGTGACCGTT GAAATCGAGGAGACCGGCTA
Downstream 100 bases:
>100_bases CTGGGCCGAATGAACCCGTGAGACTGTTACACCTCGAGGGTTTTCACACCGGTCTTTGCCCGATGCGCCGCGCGAAGGGC GCGGCGCCTAATCCAACGGG
Product: hydratase/decarboxylase
Products: NA
Alternate protein names: 2-hydroxypentadienoic acid hydratase [H]
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MRWLEEKRGISLRTSGLVGILTMSVALTLGTDIARAECASEEEVAQFVSAYVDRQPATALGAGGSMVDALCTQARVAEAL SEHFGPVIGYKAGLTSAAAQARFEASEPVRGVLYRDMMLESGATIEMPWGTVPMVEADLVLEIGDSAVNWATTPEEVMQN IKSIRPFIELPDLALAPGEPMTVETITAMGVGARKGVLGAEVPVTDPTALTAALAEMTVTLRDGTGDTVVSASGTAVLGH PAETILWLHEVGVTFKAGDLVSVGSFGPLVPPADLRGGASVIYMGLPGDPEVSIRFAPTS
Sequences:
>Translated_300_residues MRWLEEKRGISLRTSGLVGILTMSVALTLGTDIARAECASEEEVAQFVSAYVDRQPATALGAGGSMVDALCTQARVAEAL SEHFGPVIGYKAGLTSAAAQARFEASEPVRGVLYRDMMLESGATIEMPWGTVPMVEADLVLEIGDSAVNWATTPEEVMQN IKSIRPFIELPDLALAPGEPMTVETITAMGVGARKGVLGAEVPVTDPTALTAALAEMTVTLRDGTGDTVVSASGTAVLGH PAETILWLHEVGVTFKAGDLVSVGSFGPLVPPADLRGGASVIYMGLPGDPEVSIRFAPTS >Mature_300_residues MRWLEEKRGISLRTSGLVGILTMSVALTLGTDIARAECASEEEVAQFVSAYVDRQPATALGAGGSMVDALCTQARVAEAL SEHFGPVIGYKAGLTSAAAQARFEASEPVRGVLYRDMMLESGATIEMPWGTVPMVEADLVLEIGDSAVNWATTPEEVMQN IKSIRPFIELPDLALAPGEPMTVETITAMGVGARKGVLGAEVPVTDPTALTAALAEMTVTLRDGTGDTVVSASGTAVLGH PAETILWLHEVGVTFKAGDLVSVGSFGPLVPPADLRGGASVIYMGLPGDPEVSIRFAPTS
Specific function: Catalyzes the conversion of 2-hydroxypentadienoic acid (enolic form of 2-oxopent-4-enoate) to 4-hydroxy-2-ketopentanoic acid [H]
COG id: COG3971
COG function: function code Q; 2-keto-4-pentenoate hydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hydratase/decarboxylase family. MhpD subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002529 - InterPro: IPR011234 [H]
Pfam domain/function: PF01557 FAA_hydrolase [H]
EC number: =4.2.1.80 [H]
Molecular weight: Translated: 31210; Mature: 31210
Theoretical pI: Translated: 4.21; Mature: 4.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRWLEEKRGISLRTSGLVGILTMSVALTLGTDIARAECASEEEVAQFVSAYVDRQPATAL CCCCHHHCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHCCCCCHHH GAGGSMVDALCTQARVAEALSEHFGPVIGYKAGLTSAAAQARFEASEPVRGVLYRDMMLE CCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHH SGATIEMPWGTVPMVEADLVLEIGDSAVNWATTPEEVMQNIKSIRPFIELPDLALAPGEP CCCEEEECCCCCCEEECEEEEEECCCCCCCCCCHHHHHHHHHHHCCHHCCCCCEECCCCC MTVETITAMGVGARKGVLGAEVPVTDPTALTAALAEMTVTLRDGTGDTVVSASGTAVLGH CEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCEEEECCCCEEECC PAETILWLHEVGVTFKAGDLVSVGSFGPLVPPADLRGGASVIYMGLPGDPEVSIRFAPTS CHHHHHHHHHCCCEEECCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCC >Mature Secondary Structure MRWLEEKRGISLRTSGLVGILTMSVALTLGTDIARAECASEEEVAQFVSAYVDRQPATAL CCCCHHHCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHCCCCCHHH GAGGSMVDALCTQARVAEALSEHFGPVIGYKAGLTSAAAQARFEASEPVRGVLYRDMMLE CCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHH SGATIEMPWGTVPMVEADLVLEIGDSAVNWATTPEEVMQNIKSIRPFIELPDLALAPGEP CCCEEEECCCCCCEEECEEEEEECCCCCCCCCCHHHHHHHHHHHCCHHCCCCCEECCCCC MTVETITAMGVGARKGVLGAEVPVTDPTALTAALAEMTVTLRDGTGDTVVSASGTAVLGH CEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCEEEECCCCEEECC PAETILWLHEVGVTFKAGDLVSVGSFGPLVPPADLRGGASVIYMGLPGDPEVSIRFAPTS CHHHHHHHHHCCCEEECCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10537203 [H]