| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082606
Identifier: 99082606
GI number: 99082606
Start: 2914614
End: 2915207
Strand: Reverse
Name: 99082606
Synonym: TM1040_2766
Alternate gene names: NA
Gene position: 2915207-2914614 (Counterclockwise)
Preceding gene: 99082611
Following gene: 99082605
Centisome position: 91.07
GC content: 56.23
Gene sequence:
>594_bases ATGGCAAAACGAATGAGCGGACAAAAAGTTGTGAAACCGGATGCGGATGCTCTTGAAGTCAGCGCAAAGGCGGCCGGCGA CGGCGGTTTGCCTCCGGTGCACCTGTGGAATCCGCCTTATTGCGGCGATCTCGACATCCGCATTCATCGCGACGGCCGTT GGAGCTATCTTGGCTCTGAAATTCGCCGCTTTGAACTGGTGAAGCTGTTTTCCTCGATTCTGAAACGTGAGGCAGACAAG TTCTATCTGGTTACACCGGTAGAGAAAGTCGGCATCACCGTTGAGGACGCGCCTTTTGTGGCGGTGGATTTTGAAGCGGC TGGTGTGGGAAAAGAACAGATTTTGACCTTCACCACGCAGGTTGGGGATGAAACCCTTGCCGGACCAGAGAATGCCATTC GCGTTGAGACGGATCCTGAGACGGGCGAGCCTGCGCCCTATGTGCATGTGCGCGCCGGACTGGAGGCGCTGGTGGACCGC AAGAGCTTCTATCGCCTGATGGAATTGGGCGAGACGCATGATGGCTGGTTCGGTGTCTGGTCGCAGGGCGCTTTCTTTCG CATCATCAAGGCCGATGCGCTTGATTTGACCTGA
Upstream 100 bases:
>100_bases AACCTCCAGCGCTTCGATGTCGGTCAATAGATCCTGTGCTTCGCTCATGACTTCCCTTTCTGTGGGCTTATATGGTTTGA GTGTATCGCGCGGGAATGGA
Downstream 100 bases:
>100_bases GGGCAGGTGCTGGGCGCAGTGAGCATGCTCTGGGCGAGGATCCGCGCACTCCATTAAAATTGCGCAAAAGCCAGCGTTTT CTTCTTTGCGTGCCGGGTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 197; Mature: 196
Protein sequence:
>197_residues MAKRMSGQKVVKPDADALEVSAKAAGDGGLPPVHLWNPPYCGDLDIRIHRDGRWSYLGSEIRRFELVKLFSSILKREADK FYLVTPVEKVGITVEDAPFVAVDFEAAGVGKEQILTFTTQVGDETLAGPENAIRVETDPETGEPAPYVHVRAGLEALVDR KSFYRLMELGETHDGWFGVWSQGAFFRIIKADALDLT
Sequences:
>Translated_197_residues MAKRMSGQKVVKPDADALEVSAKAAGDGGLPPVHLWNPPYCGDLDIRIHRDGRWSYLGSEIRRFELVKLFSSILKREADK FYLVTPVEKVGITVEDAPFVAVDFEAAGVGKEQILTFTTQVGDETLAGPENAIRVETDPETGEPAPYVHVRAGLEALVDR KSFYRLMELGETHDGWFGVWSQGAFFRIIKADALDLT >Mature_196_residues AKRMSGQKVVKPDADALEVSAKAAGDGGLPPVHLWNPPYCGDLDIRIHRDGRWSYLGSEIRRFELVKLFSSILKREADKF YLVTPVEKVGITVEDAPFVAVDFEAAGVGKEQILTFTTQVGDETLAGPENAIRVETDPETGEPAPYVHVRAGLEALVDRK SFYRLMELGETHDGWFGVWSQGAFFRIIKADALDLT
Specific function: Unknown
COG id: COG3816
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21793; Mature: 21662
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKRMSGQKVVKPDADALEVSAKAAGDGGLPPVHLWNPPYCGDLDIRIHRDGRWSYLGSE CCCCCCCCEEECCCCCCEEEEEECCCCCCCCCEEECCCCCCCCEEEEEECCCCCHHHHHH IRRFELVKLFSSILKREADKFYLVTPVEKVGITVEDAPFVAVDFEAAGVGKEQILTFTTQ HHHHHHHHHHHHHHHHCCCCEEEEECHHHHCEEECCCCEEEEECCCCCCCHHHEEEEEEC VGDETLAGPENAIRVETDPETGEPAPYVHVRAGLEALVDRKSFYRLMELGETHDGWFGVW CCCCCCCCCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC SQGAFFRIIKADALDLT CCCEEEEEEECCCCCCC >Mature Secondary Structure AKRMSGQKVVKPDADALEVSAKAAGDGGLPPVHLWNPPYCGDLDIRIHRDGRWSYLGSE CCCCCCCEEECCCCCCEEEEEECCCCCCCCCEEECCCCCCCCEEEEEECCCCCHHHHHH IRRFELVKLFSSILKREADKFYLVTPVEKVGITVEDAPFVAVDFEAAGVGKEQILTFTTQ HHHHHHHHHHHHHHHHCCCCEEEEECHHHHCEEECCCCEEEEECCCCCCCHHHEEEEEEC VGDETLAGPENAIRVETDPETGEPAPYVHVRAGLEALVDRKSFYRLMELGETHDGWFGVW CCCCCCCCCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC SQGAFFRIIKADALDLT CCCEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA