| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082609
Identifier: 99082609
GI number: 99082609
Start: 2917169
End: 2919958
Strand: Direct
Name: 99082609
Synonym: TM1040_2769
Alternate gene names: NA
Gene position: 2917169-2919958 (Clockwise)
Preceding gene: 99082608
Following gene: 99082610
Centisome position: 91.13
GC content: 63.44
Gene sequence:
>2790_bases ATGACGATGATCGCGGGCATAGGTTTTGCAAGCCCCTGGCTTCTGCTTGGGCTCTTGGTGTTGCCGATCCTGTGGCTTTT GCTGCGTGCAATCCCGCCCGCGCCCAAACGGCAGCCCTTTCCTGCCGTGACGCTTTTGCTCGGGCTCAAGGATGACGAGA GCCTTTCGGATCGCACGCCTTGGTGGCTTTTGCTGTTGAGGATGCTGGCCGTCGCGGCAGCCATCGTGGGGCTCTCCGGG CCGGTGCTGAACCCCGCACAAGAACAGAGCGGCGATGGGCCGTTGCTGATCGTGATGGATTCCGGCTGGGGCGGCGCGCC TCATTGGGAGCAAAACCGCAGCCACATTGAGGCAGAACTCAGTGAGGCAGGCCGGGCCGGACGCCCGGTTGCCCTGTTGC GCCTGACCGAGCCTGAGCCACTGCAATTTCGCGCCGCAGGATATTGGGGACGCCAACTCCCGGGCATGACGCCAGCACCC TGGGTTGCGTCCCCTGAACAGGTGCGTGCCGCGATGGACCTCATTGCAGAGGTCGAGGGCGGATTTGACACGCTCTGGCT CAGTGACGGGCTGGCAATGGCGGCGCGCCAGGATCTGGTCACGGCCCTTGGTGAGCGCGGCAACATCGAAGTCTATGAAA GCGGCGCTCCCGTGATCGGGCTTCTGCCCGCGACCTATGCCGATGGAGCGATCACACTCAGTGCCCAGCGCAGTAATACC GGGCTGACGCAGGAAATCACGGTGCAGGCCTTGGGTCCGGATCCCAATGGCACCGAAAGGGCGCTGGCCTCCACCACGAT CACCTTTGACGCAGCGGCCAGCGCTGCAGAGACTCAGATCGCGCTGCCGATGGAGCTGCGCGCCCGCATCAGTCGCTTTG AAATCCTCAATACGCGTTCCGCCGGGGCGGTTTCGCTCACCGATGATCGCTTGCGGCGGCGGGAAGTGGCACTCATTTCC GCCCAGAGCGAGGATGAGGGCCTCGCGCTCTTGTCAGCGCTGCACTACCTGCGCCAAGCGCTGGAACCGACGGCGGAGCT GCTGGAAGGCTCGTTGACGGATCTGCTACCCGCAAACCCGGATGTCGTGGTTCTGGCGGATGTGGCCCGCCTTGCTCCCG CCCAGGAAGAAGCCCTGATCGACTGGGTCGAGTCGGGTGGGCTTTTGTTGCGGTTCGCCGGACCACGGCTTGCTGCCAGC GACACCGCACGCGACACTGAGGAACCCTTGATGCCCGTGCGCCTGCGCATCGGCGGGCGCAGCATCGGCGGCGCGATGAG CTGGGGTGAGCCCAAGGCGCTTGCGCCCTTTGCAGAAGGCTCGCCCTTTTACGGGTTGGACATTCCTCAGGATGTCGCAG TGAGCTCTCAGGTCATGGCACAGCCCGACCCGGAGCTGGCCAGCCGCGTGGTGGCGGAACTCAGCGATGGCACCCCGCTG GTGACCCGCAAACCGCTTGGTCAGGGGCAGGTGATCCTGTTTCATGTCACTGCAAATGCAGAATGGAGCAGCCTGCCGCT TTCGGGGCTGTTCGTAGACATGCTTGAGCGCCTTGCAGTTTCTTCCGCTTCCAAACCGCCCAGCGCTGACGATCTGGAAG GCACCACGTGGCAAGCCGTCGAAGTGCTGGATGGCTTTGGCCGGTTGACGGACGCGGACACGCTTTCAGGAGTCGCAGGT CCAGACCTCATCGACGCGCCCTCGGGTCCAACATTGCAACCCGGGCTCTATACCAGCGGCAGCGGAGCCTATGCGCGCAA TGTACTGCGCGATGGTGATGGTATTGAACCTTCGATCTGGCCTGCCTCGGTTCCAGTCCTTACCTACGAAGGCGCGGCTG AACGGCCCCTTGGGGGGCTGCTCCTCAGCCTGGCATTGGTGTTGCTTGCGGTGGATATTGCGGCGGCTCTGTGGGTCTCA GGCCTTTGGTCTCCGGCCAAAGTAGCTACAATTGCACTCGGGATGGGCCTCGCGGGTAGCGGCTTTATTGCTCTGCCGCC CGCAGCACAGGCGCAGATGGCCACCCCACTCAACCTCCCCTCTGAAACCGAGCTCACCTCTGAGCTGACTCTGGGCCATG TTCTGACCGGCGATGCGCGAGTCGACCAGATCGCCGCAGAGGGGCTGCGCGGCCTCAGCAATGTCATGACGCTCAGAACA TCTGTCGAACCCGCGGCACCCTATGGGGTGGACCTGGAAACTGATGAGCTCGCGTTCTTTCCCTTTCTGTATTGGCCCGT CACCGAGGGCCAGCCGCTGCCCTCATCAGAGGCCTACAGCAAGCTCAACGCTTATCTGCGCACTGGTGGGATGATCCTGT TTGACACCCGCGACGCGGATCTGACGCAGACAGGGGCCAGCTCGGGCGCGGCACGGCGCTTGCAACAACTGGCGCTGCCG CTGGATATCCCGCCACTGGAGCCGATCCCCGCCGACCACGTTCTGACTCGCGCTTTCTACCTGCTTCAGGATTTTCCCGG TCGTCACCCACGCGGACAGATCTGGGTCGAAGCCGCACCGCCGGATGCCAAGCAGGTCGACGGCCTCCCGTTTCGCAATC TAAACGACGGGGTGACACCCGTGGTGATCGGAGGCAATGACTGGGCGGCCGCATGGGCCGTGGATGAACGCAATTCGCCG CTTTATCCAGTGGGGCGTGGTTTTTCAGGGGAACGCCAGCGCGAACTGGCCCGCCGTTTTGGGGTCAACCTGCTGATGCA TGTGCTGACGGGGAACTATAAATCCGATCAGGTCCATGTGCCTGCGCTTCTGGACCGACTGGGGCAGTAA
Upstream 100 bases:
>100_bases CACTCTGCCGCGCGGCAGGCTGGACGCTTGGGCTGCATCACACCGGCGACAGCGCCCAATCGGGGCTGCTGTGGCTCTAT CACGCATTGGAGCGGCGGCA
Downstream 100 bases:
>100_bases AATGATGCAGAAACCAAATCCTGCGGCGCAAGGAGCTCGTGTGGCATGACCCAGACCATCCTCTTTGATCCCCTTGTGCC CTTGGCGCTGCTGGCCGTGT
Product: double-transmembrane region-like
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 929; Mature: 928
Protein sequence:
>929_residues MTMIAGIGFASPWLLLGLLVLPILWLLLRAIPPAPKRQPFPAVTLLLGLKDDESLSDRTPWWLLLLRMLAVAAAIVGLSG PVLNPAQEQSGDGPLLIVMDSGWGGAPHWEQNRSHIEAELSEAGRAGRPVALLRLTEPEPLQFRAAGYWGRQLPGMTPAP WVASPEQVRAAMDLIAEVEGGFDTLWLSDGLAMAARQDLVTALGERGNIEVYESGAPVIGLLPATYADGAITLSAQRSNT GLTQEITVQALGPDPNGTERALASTTITFDAAASAAETQIALPMELRARISRFEILNTRSAGAVSLTDDRLRRREVALIS AQSEDEGLALLSALHYLRQALEPTAELLEGSLTDLLPANPDVVVLADVARLAPAQEEALIDWVESGGLLLRFAGPRLAAS DTARDTEEPLMPVRLRIGGRSIGGAMSWGEPKALAPFAEGSPFYGLDIPQDVAVSSQVMAQPDPELASRVVAELSDGTPL VTRKPLGQGQVILFHVTANAEWSSLPLSGLFVDMLERLAVSSASKPPSADDLEGTTWQAVEVLDGFGRLTDADTLSGVAG PDLIDAPSGPTLQPGLYTSGSGAYARNVLRDGDGIEPSIWPASVPVLTYEGAAERPLGGLLLSLALVLLAVDIAAALWVS GLWSPAKVATIALGMGLAGSGFIALPPAAQAQMATPLNLPSETELTSELTLGHVLTGDARVDQIAAEGLRGLSNVMTLRT SVEPAAPYGVDLETDELAFFPFLYWPVTEGQPLPSSEAYSKLNAYLRTGGMILFDTRDADLTQTGASSGAARRLQQLALP LDIPPLEPIPADHVLTRAFYLLQDFPGRHPRGQIWVEAAPPDAKQVDGLPFRNLNDGVTPVVIGGNDWAAAWAVDERNSP LYPVGRGFSGERQRELARRFGVNLLMHVLTGNYKSDQVHVPALLDRLGQ
Sequences:
>Translated_929_residues MTMIAGIGFASPWLLLGLLVLPILWLLLRAIPPAPKRQPFPAVTLLLGLKDDESLSDRTPWWLLLLRMLAVAAAIVGLSG PVLNPAQEQSGDGPLLIVMDSGWGGAPHWEQNRSHIEAELSEAGRAGRPVALLRLTEPEPLQFRAAGYWGRQLPGMTPAP WVASPEQVRAAMDLIAEVEGGFDTLWLSDGLAMAARQDLVTALGERGNIEVYESGAPVIGLLPATYADGAITLSAQRSNT GLTQEITVQALGPDPNGTERALASTTITFDAAASAAETQIALPMELRARISRFEILNTRSAGAVSLTDDRLRRREVALIS AQSEDEGLALLSALHYLRQALEPTAELLEGSLTDLLPANPDVVVLADVARLAPAQEEALIDWVESGGLLLRFAGPRLAAS DTARDTEEPLMPVRLRIGGRSIGGAMSWGEPKALAPFAEGSPFYGLDIPQDVAVSSQVMAQPDPELASRVVAELSDGTPL VTRKPLGQGQVILFHVTANAEWSSLPLSGLFVDMLERLAVSSASKPPSADDLEGTTWQAVEVLDGFGRLTDADTLSGVAG PDLIDAPSGPTLQPGLYTSGSGAYARNVLRDGDGIEPSIWPASVPVLTYEGAAERPLGGLLLSLALVLLAVDIAAALWVS GLWSPAKVATIALGMGLAGSGFIALPPAAQAQMATPLNLPSETELTSELTLGHVLTGDARVDQIAAEGLRGLSNVMTLRT SVEPAAPYGVDLETDELAFFPFLYWPVTEGQPLPSSEAYSKLNAYLRTGGMILFDTRDADLTQTGASSGAARRLQQLALP LDIPPLEPIPADHVLTRAFYLLQDFPGRHPRGQIWVEAAPPDAKQVDGLPFRNLNDGVTPVVIGGNDWAAAWAVDERNSP LYPVGRGFSGERQRELARRFGVNLLMHVLTGNYKSDQVHVPALLDRLGQ >Mature_928_residues TMIAGIGFASPWLLLGLLVLPILWLLLRAIPPAPKRQPFPAVTLLLGLKDDESLSDRTPWWLLLLRMLAVAAAIVGLSGP VLNPAQEQSGDGPLLIVMDSGWGGAPHWEQNRSHIEAELSEAGRAGRPVALLRLTEPEPLQFRAAGYWGRQLPGMTPAPW VASPEQVRAAMDLIAEVEGGFDTLWLSDGLAMAARQDLVTALGERGNIEVYESGAPVIGLLPATYADGAITLSAQRSNTG LTQEITVQALGPDPNGTERALASTTITFDAAASAAETQIALPMELRARISRFEILNTRSAGAVSLTDDRLRRREVALISA QSEDEGLALLSALHYLRQALEPTAELLEGSLTDLLPANPDVVVLADVARLAPAQEEALIDWVESGGLLLRFAGPRLAASD TARDTEEPLMPVRLRIGGRSIGGAMSWGEPKALAPFAEGSPFYGLDIPQDVAVSSQVMAQPDPELASRVVAELSDGTPLV TRKPLGQGQVILFHVTANAEWSSLPLSGLFVDMLERLAVSSASKPPSADDLEGTTWQAVEVLDGFGRLTDADTLSGVAGP DLIDAPSGPTLQPGLYTSGSGAYARNVLRDGDGIEPSIWPASVPVLTYEGAAERPLGGLLLSLALVLLAVDIAAALWVSG LWSPAKVATIALGMGLAGSGFIALPPAAQAQMATPLNLPSETELTSELTLGHVLTGDARVDQIAAEGLRGLSNVMTLRTS VEPAAPYGVDLETDELAFFPFLYWPVTEGQPLPSSEAYSKLNAYLRTGGMILFDTRDADLTQTGASSGAARRLQQLALPL DIPPLEPIPADHVLTRAFYLLQDFPGRHPRGQIWVEAAPPDAKQVDGLPFRNLNDGVTPVVIGGNDWAAAWAVDERNSPL YPVGRGFSGERQRELARRFGVNLLMHVLTGNYKSDQVHVPALLDRLGQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98703; Mature: 98571
Theoretical pI: Translated: 4.35; Mature: 4.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMIAGIGFASPWLLLGLLVLPILWLLLRAIPPAPKRQPFPAVTLLLGLKDDESLSDRTP CCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCC WWLLLLRMLAVAAAIVGLSGPVLNPAQEQSGDGPLLIVMDSGWGGAPHWEQNRSHIEAEL HHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHH SEAGRAGRPVALLRLTEPEPLQFRAAGYWGRQLPGMTPAPWVASPEQVRAAMDLIAEVEG HHCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC GFDTLWLSDGLAMAARQDLVTALGERGNIEVYESGAPVIGLLPATYADGAITLSAQRSNT CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCEEEEEECCCCC GLTQEITVQALGPDPNGTERALASTTITFDAAASAAETQIALPMELRARISRFEILNTRS CCCEEEEEEEECCCCCCCHHHHHHEEEEECCCCCCCCCEEECCHHHHHHHHHHHEEECCC AGAVSLTDDRLRRREVALISAQSEDEGLALLSALHYLRQALEPTAELLEGSLTDLLPANP CCEEEECHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC DVVVLADVARLAPAQEEALIDWVESGGLLLRFAGPRLAASDTARDTEEPLMPVRLRIGGR CEEEEECHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC SIGGAMSWGEPKALAPFAEGSPFYGLDIPQDVAVSSQVMAQPDPELASRVVAELSDGTPL CCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHCHHHHCCCCHHHHHHHHHHHCCCCCE VTRKPLGQGQVILFHVTANAEWSSLPLSGLFVDMLERLAVSSASKPPSADDLEGTTWQAV EEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH EVLDGFGRLTDADTLSGVAGPDLIDAPSGPTLQPGLYTSGSGAYARNVLRDGDGIEPSIW HHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHCCCCCCCCCCC PASVPVLTYEGAAERPLGGLLLSLALVLLAVDIAAALWVSGLWSPAKVATIALGMGLAGS CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC GFIALPPAAQAQMATPLNLPSETELTSELTLGHVLTGDARVDQIAAEGLRGLSNVMTLRT CCEECCCCCCHHCCCCCCCCCCCHHHHHHEECEEEECCHHHHHHHHHHHHHHHHHHHHHH SVEPAAPYGVDLETDELAFFPFLYWPVTEGQPLPSSEAYSKLNAYLRTGGMILFDTRDAD CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC LTQTGASSGAARRLQQLALPLDIPPLEPIPADHVLTRAFYLLQDFPGRHPRGQIWVEAAP CHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC PDAKQVDGLPFRNLNDGVTPVVIGGNDWAAAWAVDERNSPLYPVGRGFSGERQRELARRF CCHHHCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH GVNLLMHVLTGNYKSDQVHVPALLDRLGQ HHHHHHHHHHCCCCCCCEEHHHHHHHHCC >Mature Secondary Structure TMIAGIGFASPWLLLGLLVLPILWLLLRAIPPAPKRQPFPAVTLLLGLKDDESLSDRTP CEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCC WWLLLLRMLAVAAAIVGLSGPVLNPAQEQSGDGPLLIVMDSGWGGAPHWEQNRSHIEAEL HHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHH SEAGRAGRPVALLRLTEPEPLQFRAAGYWGRQLPGMTPAPWVASPEQVRAAMDLIAEVEG HHCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC GFDTLWLSDGLAMAARQDLVTALGERGNIEVYESGAPVIGLLPATYADGAITLSAQRSNT CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCEEEEEECCCCC GLTQEITVQALGPDPNGTERALASTTITFDAAASAAETQIALPMELRARISRFEILNTRS CCCEEEEEEEECCCCCCCHHHHHHEEEEECCCCCCCCCEEECCHHHHHHHHHHHEEECCC AGAVSLTDDRLRRREVALISAQSEDEGLALLSALHYLRQALEPTAELLEGSLTDLLPANP CCEEEECHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC DVVVLADVARLAPAQEEALIDWVESGGLLLRFAGPRLAASDTARDTEEPLMPVRLRIGGR CEEEEECHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC SIGGAMSWGEPKALAPFAEGSPFYGLDIPQDVAVSSQVMAQPDPELASRVVAELSDGTPL CCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHCHHHHCCCCHHHHHHHHHHHCCCCCE VTRKPLGQGQVILFHVTANAEWSSLPLSGLFVDMLERLAVSSASKPPSADDLEGTTWQAV EEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH EVLDGFGRLTDADTLSGVAGPDLIDAPSGPTLQPGLYTSGSGAYARNVLRDGDGIEPSIW HHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHCCCCCCCCCCC PASVPVLTYEGAAERPLGGLLLSLALVLLAVDIAAALWVSGLWSPAKVATIALGMGLAGS CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC GFIALPPAAQAQMATPLNLPSETELTSELTLGHVLTGDARVDQIAAEGLRGLSNVMTLRT CCEECCCCCCHHCCCCCCCCCCCHHHHHHEECEEEECCHHHHHHHHHHHHHHHHHHHHHH SVEPAAPYGVDLETDELAFFPFLYWPVTEGQPLPSSEAYSKLNAYLRTGGMILFDTRDAD CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC LTQTGASSGAARRLQQLALPLDIPPLEPIPADHVLTRAFYLLQDFPGRHPRGQIWVEAAP CHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC PDAKQVDGLPFRNLNDGVTPVVIGGNDWAAAWAVDERNSPLYPVGRGFSGERQRELARRF CCHHHCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH GVNLLMHVLTGNYKSDQVHVPALLDRLGQ HHHHHHHHHHCCCCCCCEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA