| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082608
Identifier: 99082608
GI number: 99082608
Start: 2916264
End: 2917172
Strand: Direct
Name: 99082608
Synonym: TM1040_2768
Alternate gene names: NA
Gene position: 2916264-2917172 (Clockwise)
Preceding gene: 99082607
Following gene: 99082609
Centisome position: 91.11
GC content: 64.47
Gene sequence:
>909_bases GTGAGCCTGCCCCTCGCCTCTCCCGACAGGACGGCGCGCGGCCCCGCAGGCCAGATCCGCAGCCGCGCCGAAGAGGCCGC CAGTGTCCTGCCGCCGCTGTTGGTGCAGGCCCAACAACTCGCCGGGGCGGTCTTGCTCGGCGAACACGGCCGCAGGCGCT CTGGGGTGGGCGATGATTTCTGGCAATATCGCCCCGTGCAGCAAGGCGATAGCCGTCGCATGATCGACCATCGCCGCTCC GCGCGTGGCGATCAGCAATTTGTCCGCGAGCGGGAATGGCAGATTGCCCAGACTGTCCATCTCTGGGTGGACCAGGGACA GTCCATGCGCTTTGCCTCAGATGGAAAACTGCCCCAAAAGATCGACCGCGCGCGCCTGCTGGCCCTAGCGTCTGCAGTGC TGATGGTGCGCGGTGGCGAACGTGTCGGGCTCACAGGTGGGCTGTTGCCGCCACGGCGCGGAAACATGCAAATCCTGCGA TTGGCCGAGCATTTTACCACTCAGGACGACGCCACATATGCGCCACCCGAACATCGGGCCCTCATTCCGCATGCGCGGGC CTTGTTCATCTCTGACTTCCTCGGACCCTTTGAGGAGCTCGAGATCGCGCTGAGCAAAGCCGCAGATCGCGGCCTTCGAG GGGTGCTGTTGCAGGTGCTTGATCCAAGCGAAGAGCTGTTTCCCTTTGCAGGGCGCACCCGGTTCGAGGGACCGCACAAA GCGCATGTTCACGAAACACTCAAAGCATCTGCCCTGCGGGACCGGTATCTTGAGCGTCTCGCGCAACGGCGCGATGCACT CGAAACACTCTGCCGCGCGGCAGGCTGGACGCTTGGGCTGCATCACACCGGCGACAGCGCCCAATCGGGGCTGCTGTGGC TCTATCACGCATTGGAGCGGCGGCAATGA
Upstream 100 bases:
>100_bases ACCGCATGCAACTCAACTTTGCCGCGCGCGCCCGCGGCGACAGCCTTGCCGAGCTGATCGACGAAACCGCCGCCTCCCTC GTCAAAGCCGAGGCCGCCGC
Downstream 100 bases:
>100_bases CGATGATCGCGGGCATAGGTTTTGCAAGCCCCTGGCTTCTGCTTGGGCTCTTGGTGTTGCCGATCCTGTGGCTTTTGCTG CGTGCAATCCCGCCCGCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 302; Mature: 301
Protein sequence:
>302_residues MSLPLASPDRTARGPAGQIRSRAEEAASVLPPLLVQAQQLAGAVLLGEHGRRRSGVGDDFWQYRPVQQGDSRRMIDHRRS ARGDQQFVREREWQIAQTVHLWVDQGQSMRFASDGKLPQKIDRARLLALASAVLMVRGGERVGLTGGLLPPRRGNMQILR LAEHFTTQDDATYAPPEHRALIPHARALFISDFLGPFEELEIALSKAADRGLRGVLLQVLDPSEELFPFAGRTRFEGPHK AHVHETLKASALRDRYLERLAQRRDALETLCRAAGWTLGLHHTGDSAQSGLLWLYHALERRQ
Sequences:
>Translated_302_residues MSLPLASPDRTARGPAGQIRSRAEEAASVLPPLLVQAQQLAGAVLLGEHGRRRSGVGDDFWQYRPVQQGDSRRMIDHRRS ARGDQQFVREREWQIAQTVHLWVDQGQSMRFASDGKLPQKIDRARLLALASAVLMVRGGERVGLTGGLLPPRRGNMQILR LAEHFTTQDDATYAPPEHRALIPHARALFISDFLGPFEELEIALSKAADRGLRGVLLQVLDPSEELFPFAGRTRFEGPHK AHVHETLKASALRDRYLERLAQRRDALETLCRAAGWTLGLHHTGDSAQSGLLWLYHALERRQ >Mature_301_residues SLPLASPDRTARGPAGQIRSRAEEAASVLPPLLVQAQQLAGAVLLGEHGRRRSGVGDDFWQYRPVQQGDSRRMIDHRRSA RGDQQFVREREWQIAQTVHLWVDQGQSMRFASDGKLPQKIDRARLLALASAVLMVRGGERVGLTGGLLPPRRGNMQILRL AEHFTTQDDATYAPPEHRALIPHARALFISDFLGPFEELEIALSKAADRGLRGVLLQVLDPSEELFPFAGRTRFEGPHKA HVHETLKASALRDRYLERLAQRRDALETLCRAAGWTLGLHHTGDSAQSGLLWLYHALERRQ
Specific function: Unknown
COG id: COG1721
COG function: function code R; Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33819; Mature: 33688
Theoretical pI: Translated: 10.52; Mature: 10.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLPLASPDRTARGPAGQIRSRAEEAASVLPPLLVQAQQLAGAVLLGEHGRRRSGVGDDF CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCHH WQYRPVQQGDSRRMIDHRRSARGDQQFVREREWQIAQTVHLWVDQGQSMRFASDGKLPQK HHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHH IDRARLLALASAVLMVRGGERVGLTGGLLPPRRGNMQILRLAEHFTTQDDATYAPPEHRA HHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCE LIPHARALFISDFLGPFEELEIALSKAADRGLRGVLLQVLDPSEELFPFAGRTRFEGPHK ECHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCH AHVHETLKASALRDRYLERLAQRRDALETLCRAAGWTLGLHHTGDSAQSGLLWLYHALER HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH RQ CC >Mature Secondary Structure SLPLASPDRTARGPAGQIRSRAEEAASVLPPLLVQAQQLAGAVLLGEHGRRRSGVGDDF CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCHH WQYRPVQQGDSRRMIDHRRSARGDQQFVREREWQIAQTVHLWVDQGQSMRFASDGKLPQK HHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHH IDRARLLALASAVLMVRGGERVGLTGGLLPPRRGNMQILRLAEHFTTQDDATYAPPEHRA HHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCE LIPHARALFISDFLGPFEELEIALSKAADRGLRGVLLQVLDPSEELFPFAGRTRFEGPHK ECHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCH AHVHETLKASALRDRYLERLAQRRDALETLCRAAGWTLGLHHTGDSAQSGLLWLYHALER HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH RQ CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA