Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082610

Identifier: 99082610

GI number: 99082610

Start: 2920004

End: 2922046

Strand: Direct

Name: 99082610

Synonym: TM1040_2770

Alternate gene names: NA

Gene position: 2920004-2922046 (Clockwise)

Preceding gene: 99082609

Following gene: 99082614

Centisome position: 91.22

GC content: 63.88

Gene sequence:

>2043_bases
ATGACCCAGACCATCCTCTTTGATCCCCTTGTGCCCTTGGCGCTGCTGGCCGTGTTGGCAGGCCTGAGTGTACTGGCCAT
GGCCCTCGCCATCTGGCGCAGGCTAGCCGGCTGGGCCTTGCGCGCGGGGGCTGCGCTGGTGCTCTTGGCGGCGCTCTCTG
GGCCAGTCATCCAAGTGGAGGACCGCAGCCCCCTCAGCGACATTGTGATCGTGGCAGAGGACCGCACCGCCAGTCAGACC
CTTTCCGATCGCCCTGATCAGATGGCGGCGGCCCGCACGGAACTGGAGGCGGCGCTGGCCAAGCGGGCCAATACGGATGT
ACGCTGGATCGCCGTCGAAGACAGCCCCGATGACGGTGGTACGCAGCTGATGGACGCGCTGACCCGCGCCCTCGCGGATG
AGCCGCGCGCGCGCGTGGCAGGGCTCATCGCGCTCTCGGATGGACAGGTGCATGATATGGAGCGCGCACCAGAGCTGCCC
GCCCCTTTGCACCTTTTGATGACCGGCCGCGACAGCGACTGGGATCGCCGCCTGATTGTCCGCAACGCACCCTCTTTCGG
CATCATAGGCGAGCCAATCACCCTGACACTCCGGGTTGAAGATCAAGGCGCCGCGCCCGAGGGACTTCAGTCCACTGAGT
TGCAAATCGCGATTGATGGCGGCGCGGCGCAGAGCTTTCGACTGCCCGTCGGAGTTGATTTTGACCTGCCGCTGACGCTG
CCGCACGGTGGGCGCAACGTGATCGAATTCCGCGTGCCCGAGGCAGAGGGCGAGCTCACAACCCGCAACAATGCCGCACT
TTTGCAGATCAATGGCGTGCGCGACCGGCTGCGGGTTCTTCTGGTTTCCGGCGCGCCACACCCCGGAGGGCGGACGTGGC
GCAACCTCTTGAAGTCGGACAGTGCGGTGGATCTGGTCCATTTCACCATTCTGCGCCCGCCGGAGAAACAGGACGGCGTT
CCCGTCGACGAACTGTCTCTGATCGCTTTTCCAACCCGCGAGCTGTTCCTCGAAAAGATTGAGGATTTTGATCTCATTAT
CTTTGACCGTTACAAACGGCGCGGCATCCTGCCCTCTGCCTATCTGGAGAATGTGGCCAATTATGTGCGCCGAGGTGGGG
CTGTTCTGGTTGCCGCAGGCCCCGATTTTGCAAGCGCCGACAGCATCTTTCGCACCCCTCTGGCTGAGGTTCTGCCGGCG
CGCCCCTCCGCCCGCGTCCTTGAGGAGCCTTACCGTCCTGTCATCAGCGAGTCCGGTCTTCAGCATCCGGTGACAGCAGA
GCTGACCGGTGCAGAGAGCTGGGGTCGCTGGATGCGGCAAGTCGAACTCGACACCACGGGCGGCGTCACATTGATGCACG
GCGTGGGCGAGCGTCCGCTGCTCACGCTTGACCGGGTCGAGGAGGGGCGTGTAGCGCTGCTGGCCTCTGATCATGCTTGG
CTCTGGAGTCGCGGGTATGACGGCGGTGGCCCGCAGCTGGAGCTTTTGCGACGCCTCGCGCATTGGATGATGAAGGAGCC
CGAGCTTGAAGAAGAGGTCCTCACCGCTGAAGCCACGGGGCAACGTATGCGGATTGAACGCCGCACGCTTGGCGAAACCG
TAGGACCAGTCACCATCACGGCTCCTGACGGCACCACTTCCGAGATCGCGTTGCGACAACAGCGTCCTGGCCTTTGGGAA
GGTCGCTATGAAAGTGATCAGATCGGGCTCTACCATCTCGAAGAGGGTGAAGAGCGTACCGTGATCGGGCTTGGTCCCGC
CGCGCCACGCGAATTCGAGCAAACAATTGCGACAGCCGATCTGGTGGGGCCACTCGTGCGCTCGCTACGCGGCGGTACCG
TCGCTCTTGAGGACGGCATGCCCTCTTTGCGCAACATTCGCGAGGGGCGCCCCGCTGCGGGGCGCGGCTGGATCGGGCTG
GTACCACGGGGCGCATATGAGACAACCGCCGTGACCCAATCCCCGCTGCTTCCTTCATGGTTCTTGCTACTTCTGGCGGC
GACACTCATGATTGGCGCGTGGCTGCGAGAGGGGCGCAGCTGA

Upstream 100 bases:

>100_bases
CTATAAATCCGATCAGGTCCATGTGCCTGCGCTTCTGGACCGACTGGGGCAGTAAAATGATGCAGAAACCAAATCCTGCG
GCGCAAGGAGCTCGTGTGGC

Downstream 100 bases:

>100_bases
GTCAGTTGTCATATCCATCGGAGCCGCCCCCTCGATCTCTAGAGCATCATTGAAGCGGGCACATGCGCCATGCTTTGTGA
CGGGCAGATCCCAGCACACC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 680; Mature: 679

Protein sequence:

>680_residues
MTQTILFDPLVPLALLAVLAGLSVLAMALAIWRRLAGWALRAGAALVLLAALSGPVIQVEDRSPLSDIVIVAEDRTASQT
LSDRPDQMAAARTELEAALAKRANTDVRWIAVEDSPDDGGTQLMDALTRALADEPRARVAGLIALSDGQVHDMERAPELP
APLHLLMTGRDSDWDRRLIVRNAPSFGIIGEPITLTLRVEDQGAAPEGLQSTELQIAIDGGAAQSFRLPVGVDFDLPLTL
PHGGRNVIEFRVPEAEGELTTRNNAALLQINGVRDRLRVLLVSGAPHPGGRTWRNLLKSDSAVDLVHFTILRPPEKQDGV
PVDELSLIAFPTRELFLEKIEDFDLIIFDRYKRRGILPSAYLENVANYVRRGGAVLVAAGPDFASADSIFRTPLAEVLPA
RPSARVLEEPYRPVISESGLQHPVTAELTGAESWGRWMRQVELDTTGGVTLMHGVGERPLLTLDRVEEGRVALLASDHAW
LWSRGYDGGGPQLELLRRLAHWMMKEPELEEEVLTAEATGQRMRIERRTLGETVGPVTITAPDGTTSEIALRQQRPGLWE
GRYESDQIGLYHLEEGEERTVIGLGPAAPREFEQTIATADLVGPLVRSLRGGTVALEDGMPSLRNIREGRPAAGRGWIGL
VPRGAYETTAVTQSPLLPSWFLLLLAATLMIGAWLREGRS

Sequences:

>Translated_680_residues
MTQTILFDPLVPLALLAVLAGLSVLAMALAIWRRLAGWALRAGAALVLLAALSGPVIQVEDRSPLSDIVIVAEDRTASQT
LSDRPDQMAAARTELEAALAKRANTDVRWIAVEDSPDDGGTQLMDALTRALADEPRARVAGLIALSDGQVHDMERAPELP
APLHLLMTGRDSDWDRRLIVRNAPSFGIIGEPITLTLRVEDQGAAPEGLQSTELQIAIDGGAAQSFRLPVGVDFDLPLTL
PHGGRNVIEFRVPEAEGELTTRNNAALLQINGVRDRLRVLLVSGAPHPGGRTWRNLLKSDSAVDLVHFTILRPPEKQDGV
PVDELSLIAFPTRELFLEKIEDFDLIIFDRYKRRGILPSAYLENVANYVRRGGAVLVAAGPDFASADSIFRTPLAEVLPA
RPSARVLEEPYRPVISESGLQHPVTAELTGAESWGRWMRQVELDTTGGVTLMHGVGERPLLTLDRVEEGRVALLASDHAW
LWSRGYDGGGPQLELLRRLAHWMMKEPELEEEVLTAEATGQRMRIERRTLGETVGPVTITAPDGTTSEIALRQQRPGLWE
GRYESDQIGLYHLEEGEERTVIGLGPAAPREFEQTIATADLVGPLVRSLRGGTVALEDGMPSLRNIREGRPAAGRGWIGL
VPRGAYETTAVTQSPLLPSWFLLLLAATLMIGAWLREGRS
>Mature_679_residues
TQTILFDPLVPLALLAVLAGLSVLAMALAIWRRLAGWALRAGAALVLLAALSGPVIQVEDRSPLSDIVIVAEDRTASQTL
SDRPDQMAAARTELEAALAKRANTDVRWIAVEDSPDDGGTQLMDALTRALADEPRARVAGLIALSDGQVHDMERAPELPA
PLHLLMTGRDSDWDRRLIVRNAPSFGIIGEPITLTLRVEDQGAAPEGLQSTELQIAIDGGAAQSFRLPVGVDFDLPLTLP
HGGRNVIEFRVPEAEGELTTRNNAALLQINGVRDRLRVLLVSGAPHPGGRTWRNLLKSDSAVDLVHFTILRPPEKQDGVP
VDELSLIAFPTRELFLEKIEDFDLIIFDRYKRRGILPSAYLENVANYVRRGGAVLVAAGPDFASADSIFRTPLAEVLPAR
PSARVLEEPYRPVISESGLQHPVTAELTGAESWGRWMRQVELDTTGGVTLMHGVGERPLLTLDRVEEGRVALLASDHAWL
WSRGYDGGGPQLELLRRLAHWMMKEPELEEEVLTAEATGQRMRIERRTLGETVGPVTITAPDGTTSEIALRQQRPGLWEG
RYESDQIGLYHLEEGEERTVIGLGPAAPREFEQTIATADLVGPLVRSLRGGTVALEDGMPSLRNIREGRPAAGRGWIGLV
PRGAYETTAVTQSPLLPSWFLLLLAATLMIGAWLREGRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 74157; Mature: 74026

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTILFDPLVPLALLAVLAGLSVLAMALAIWRRLAGWALRAGAALVLLAALSGPVIQVE
CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
DRSPLSDIVIVAEDRTASQTLSDRPDQMAAARTELEAALAKRANTDVRWIAVEDSPDDGG
CCCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCH
TQLMDALTRALADEPRARVAGLIALSDGQVHDMERAPELPAPLHLLMTGRDSDWDRRLIV
HHHHHHHHHHHHCCCCHHEEEEEEECCCCEECHHHCCCCCCCEEEEEECCCCCCCCEEEE
RNAPSFGIIGEPITLTLRVEDQGAAPEGLQSTELQIAIDGGAAQSFRLPVGVDFDLPLTL
ECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEECCEECCCCCCEEC
PHGGRNVIEFRVPEAEGELTTRNNAALLQINGVRDRLRVLLVSGAPHPGGRTWRNLLKSD
CCCCCCEEEEECCCCCCCEEECCCEEEEEECCHHCEEEEEEEECCCCCCCHHHHHHHCCC
SAVDLVHFTILRPPEKQDGVPVDELSLIAFPTRELFLEKIEDFDLIIFDRYKRRGILPSA
CCEEEEEEEEECCCCCCCCCCHHHEEEEECCHHHHHHHHHCCCCEEEEECHHHCCCCHHH
YLENVANYVRRGGAVLVAAGPDFASADSIFRTPLAEVLPARPSARVLEEPYRPVISESGL
HHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCHHHHHCCCCCHHHHHHCCHHHHHCCCC
QHPVTAELTGAESWGRWMRQVELDTTGGVTLMHGVGERPLLTLDRVEEGRVALLASDHAW
CCCCEEEECCCHHHHHHHHEEEECCCCCEEEEECCCCCCEEECCCCCCCCEEEEECCCCE
LWSRGYDGGGPQLELLRRLAHWMMKEPELEEEVLTAEATGQRMRIERRTLGETVGPVTIT
EEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEE
APDGTTSEIALRQQRPGLWEGRYESDQIGLYHLEEGEERTVIGLGPAAPREFEQTIATAD
CCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHH
LVGPLVRSLRGGTVALEDGMPSLRNIREGRPAAGRGWIGLVPRGAYETTAVTQSPLLPSW
HHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH
FLLLLAATLMIGAWLREGRS
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TQTILFDPLVPLALLAVLAGLSVLAMALAIWRRLAGWALRAGAALVLLAALSGPVIQVE
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
DRSPLSDIVIVAEDRTASQTLSDRPDQMAAARTELEAALAKRANTDVRWIAVEDSPDDGG
CCCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCH
TQLMDALTRALADEPRARVAGLIALSDGQVHDMERAPELPAPLHLLMTGRDSDWDRRLIV
HHHHHHHHHHHHCCCCHHEEEEEEECCCCEECHHHCCCCCCCEEEEEECCCCCCCCEEEE
RNAPSFGIIGEPITLTLRVEDQGAAPEGLQSTELQIAIDGGAAQSFRLPVGVDFDLPLTL
ECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEECCEECCCCCCEEC
PHGGRNVIEFRVPEAEGELTTRNNAALLQINGVRDRLRVLLVSGAPHPGGRTWRNLLKSD
CCCCCCEEEEECCCCCCCEEECCCEEEEEECCHHCEEEEEEEECCCCCCCHHHHHHHCCC
SAVDLVHFTILRPPEKQDGVPVDELSLIAFPTRELFLEKIEDFDLIIFDRYKRRGILPSA
CCEEEEEEEEECCCCCCCCCCHHHEEEEECCHHHHHHHHHCCCCEEEEECHHHCCCCHHH
YLENVANYVRRGGAVLVAAGPDFASADSIFRTPLAEVLPARPSARVLEEPYRPVISESGL
HHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCHHHHHCCCCCHHHHHHCCHHHHHCCCC
QHPVTAELTGAESWGRWMRQVELDTTGGVTLMHGVGERPLLTLDRVEEGRVALLASDHAW
CCCCEEEECCCHHHHHHHHEEEECCCCCEEEEECCCCCCEEECCCCCCCCEEEEECCCCE
LWSRGYDGGGPQLELLRRLAHWMMKEPELEEEVLTAEATGQRMRIERRTLGETVGPVTIT
EEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEE
APDGTTSEIALRQQRPGLWEGRYESDQIGLYHLEEGEERTVIGLGPAAPREFEQTIATAD
CCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHH
LVGPLVRSLRGGTVALEDGMPSLRNIREGRPAAGRGWIGLVPRGAYETTAVTQSPLLPSW
HHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH
FLLLLAATLMIGAWLREGRS
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA