| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is hyi [H]
Identifier: 99082605
GI number: 99082605
Start: 2913628
End: 2914395
Strand: Reverse
Name: hyi [H]
Synonym: TM1040_2765
Alternate gene names: 99082605
Gene position: 2914395-2913628 (Counterclockwise)
Preceding gene: 99082606
Following gene: 99082603
Centisome position: 91.05
GC content: 59.24
Gene sequence:
>768_bases ATGCCTAAGTTCGCGGCCAATCTATCCATGCTCTTTGCGGAGCTTCCTTACCTTGACCGATTCTCGGCTGCCGCGGCTGC TGGGTTCGAGGCGGTGGAAGTTCTCTTTCCTTATGAGTTTGCCGCCAAAGAAACGCAGCGTGCGCTTCTTGCCAATGGGC TGGAGCTTTTGTTGATCAATGCCCCGCCGCCCAATTACACCGGTGGCGATCCGGGCTATGCTGCCGTTCCCGAACAGGCG GAGCGCTTTCAGCGCGATATTCGTCGGGTACTGCGCTATGCCGACATGTTGAAAGCGGGACGTATCCACATCATGGCGGG GCCAGCCAAAGGGGAGGCCGCGCGGCGGACCTTTGTGCAGAACCTGCAGGCAGCGGCGGAGTCTGCGCCGCAGCAGCAAT TCACGATCGAACCGCTTAACAGCGGAGATTTCCCGGGCTATTTCCTCGACGATTACAACCTTGCGATCGACATTCTCGAT GAGGTTGGGCGCGACAATGTCACCCTGCAGTTCGACGCTTATCACGCCCAACTTATCCACGGAGATGCGCTCAAGGTCTG GGAGACTTTTGGGAGCCGCGCGAGCCATGTGCAATTTGCAGCAGCTCCGTCACGCTGCGAGCCGGGGCGCGGACCGGTGG ATTTTGATGCGTTGTTTCAGGCGATCGATGACAGCGGCTATAGTGGTTGGGTCAGCGCGGAATACACCCCGAGCACCCCA AGAACCGAAGACAGCCTGCGCTGGATGAAGGCCCTGCAGACCGCTTGA
Upstream 100 bases:
>100_bases GGTACGTGCAGTTCAAGTTTAAAACAAAACCCGCACACGCGCGCCCGGGGACTGTGCTATAGTGGCGTGGCGAGGGCTGC ACATCTAGCAGGAGGTGAGA
Downstream 100 bases:
>100_bases CGGCGCTCTATTTGACGTCGTCCCTGCAATTTGGGGGGCGAATGCCGGCTCTGGGGATCATCCAAAGACAATCATCGAGA GATGAGTTTCTAGCGTCGAT
Product: hydroxypyruvate isomerase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MPKFAANLSMLFAELPYLDRFSAAAAAGFEAVEVLFPYEFAAKETQRALLANGLELLLINAPPPNYTGGDPGYAAVPEQA ERFQRDIRRVLRYADMLKAGRIHIMAGPAKGEAARRTFVQNLQAAAESAPQQQFTIEPLNSGDFPGYFLDDYNLAIDILD EVGRDNVTLQFDAYHAQLIHGDALKVWETFGSRASHVQFAAAPSRCEPGRGPVDFDALFQAIDDSGYSGWVSAEYTPSTP RTEDSLRWMKALQTA
Sequences:
>Translated_255_residues MPKFAANLSMLFAELPYLDRFSAAAAAGFEAVEVLFPYEFAAKETQRALLANGLELLLINAPPPNYTGGDPGYAAVPEQA ERFQRDIRRVLRYADMLKAGRIHIMAGPAKGEAARRTFVQNLQAAAESAPQQQFTIEPLNSGDFPGYFLDDYNLAIDILD EVGRDNVTLQFDAYHAQLIHGDALKVWETFGSRASHVQFAAAPSRCEPGRGPVDFDALFQAIDDSGYSGWVSAEYTPSTP RTEDSLRWMKALQTA >Mature_254_residues PKFAANLSMLFAELPYLDRFSAAAAAGFEAVEVLFPYEFAAKETQRALLANGLELLLINAPPPNYTGGDPGYAAVPEQAE RFQRDIRRVLRYADMLKAGRIHIMAGPAKGEAARRTFVQNLQAAAESAPQQQFTIEPLNSGDFPGYFLDDYNLAIDILDE VGRDNVTLQFDAYHAQLIHGDALKVWETFGSRASHVQFAAAPSRCEPGRGPVDFDALFQAIDDSGYSGWVSAEYTPSTPR TEDSLRWMKALQTA
Specific function: Catalyzes the reversible isomerization between hydroxypyruvate and 2-hydroxy-3-oxopropanoate (also termed tartronate semialdehyde) [H]
COG id: COG3622
COG function: function code G; Hydroxypyruvate isomerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hyi family [H]
Homologues:
Organism=Homo sapiens, GI300068962, Length=262, Percent_Identity=38.9312977099237, Blast_Score=152, Evalue=2e-37, Organism=Homo sapiens, GI300068964, Length=243, Percent_Identity=39.5061728395062, Blast_Score=142, Evalue=3e-34, Organism=Escherichia coli, GI1786718, Length=255, Percent_Identity=37.6470588235294, Blast_Score=187, Evalue=5e-49, Organism=Escherichia coli, GI1789095, Length=258, Percent_Identity=39.922480620155, Blast_Score=184, Evalue=4e-48, Organism=Caenorhabditis elegans, GI17552022, Length=258, Percent_Identity=34.1085271317829, Blast_Score=151, Evalue=3e-37, Organism=Drosophila melanogaster, GI17530883, Length=262, Percent_Identity=33.587786259542, Blast_Score=135, Evalue=3e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017643 - InterPro: IPR013022 - InterPro: IPR012307 [H]
Pfam domain/function: PF01261 AP_endonuc_2 [H]
EC number: =5.3.1.22 [H]
Molecular weight: Translated: 28085; Mature: 27954
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKFAANLSMLFAELPYLDRFSAAAAAGFEAVEVLFPYEFAAKETQRALLANGLELLLIN CCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHEECCHHHHHHHHHHHHHHCCCEEEEEE APPPNYTGGDPGYAAVPEQAERFQRDIRRVLRYADMLKAGRIHIMAGPAKGEAARRTFVQ CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH NLQAAAESAPQQQFTIEPLNSGDFPGYFLDDYNLAIDILDEVGRDNVTLQFDAYHAQLIH HHHHHHHCCCCCCEEEECCCCCCCCCEEECCCCHHHHHHHHCCCCCEEEEEECEEEEEHC GDALKVWETFGSRASHVQFAAAPSRCEPGRGPVDFDALFQAIDDSGYSGWVSAEYTPSTP CCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCC RTEDSLRWMKALQTA CCHHHHHHHHHHHCC >Mature Secondary Structure PKFAANLSMLFAELPYLDRFSAAAAAGFEAVEVLFPYEFAAKETQRALLANGLELLLIN CCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHEECCHHHHHHHHHHHHHHCCCEEEEEE APPPNYTGGDPGYAAVPEQAERFQRDIRRVLRYADMLKAGRIHIMAGPAKGEAARRTFVQ CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH NLQAAAESAPQQQFTIEPLNSGDFPGYFLDDYNLAIDILDEVGRDNVTLQFDAYHAQLIH HHHHHHHCCCCCCEEEECCCCCCCCCEEECCCCHHHHHHHHCCCCCEEEEEECEEEEEHC GDALKVWETFGSRASHVQFAAAPSRCEPGRGPVDFDALFQAIDDSGYSGWVSAEYTPSTP CCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCC RTEDSLRWMKALQTA CCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8440684; 10561547; 9278503 [H]