Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 99082569

GI number: 99082569

Start: 2872121

End: 2873308

Strand: Reverse

Name: yfdE [H]

Synonym: TM1040_2729

Alternate gene names: 99082569

Gene position: 2873308-2872121 (Counterclockwise)

Preceding gene: 99082570

Following gene: 99082568

Centisome position: 89.76

GC content: 61.87

Gene sequence:

>1188_bases
ATGGGGATTAAACCGCTCTCGGGTGTTCGGGTCCTCGACCTGACCAATGTGCTAGCAGGGCCGTATTGCTGTTATCAGCT
GGCCCTGTTGGGGGCAGAAGTCATCAAGGTCGAGCGCCCCGGCACCGGCGATCTTGCTCGCCAACTGGGTGCCGACCCGG
AGCGGAATAAATCCCTGATGGGGGTCAGTTTTCTGGCGCAGAACGCGCAGAAGAAATCCGTGACCCTCGACATGAAACAT
GAAACTGGCAAGGCGCTTCTCAAGCGTCTTGTCCGCAGCTCTGATGTCCTAGTCGAGAATTTTCGCCCGGGAGTCATGGA
CCGGCTGGGGCTCGGTTATGAGGTCCTCAAGGCGGAAAATCCAAACCTCATCTACTGCGCCATTAGCGGCTTTGGCCAAG
ATGGCCCGTGGAAGAACAACCCCGCCTATGACCAGATCGTGCAGGGCATCAGCGGCGTGATGTCGATCACCGGCGATGGC
GAAAGCGCACCATTGCGTGTGGGGTATCCGCTTGCCGATACCGTGGGCGGCATGACGGCCGCGTTTGCAATCTCGGCAGC
GCTCAACGATCCGGAGCGCGGCGCGTTTCTGGATATCTCCATGACGGAGGCGGTGATTTCCACCATGGGATGGGTGGTCT
CCAACCACCTGATCGCGGGGCAGACGCCGGGCGCGCATGGCAATGAGAACACAACTTCTGCGCCCTCGGGTACCTTTGCC
TGTGCGGATGGTCCGATCAATGTGGCCGCAAACCGGGATGAGCAATGGCAATCCATGGCGCGCCATCTCGGACGCGCGGA
TCTGCTCGACCACCCGGATTATGCAACCCGTGAGGATCGAAAACGCAACCGGCACATGCTGCGCGCGGAACTCGAATGCG
TGCTGCGGACCCGGCCTGCCGCCAACTGGGTGGCCGAACTCAACGCGCTGGGCGTGCCCTCGGGGCCGGTGCTGACGGTG
CCGCAAATTCTCGAAGAGCCTCAGATCAAGGATCGTGGCCTGATTGCTGAGGTCGAGACCGAAGGCGCGCCGCTGTCGCT
TGCGGGCGCGCCCGTGCGGTTTGGCACCCATCGCCCGGTCCCGGATCAGGCGCCACCCGTGCTTGGTGCCGACAATACCA
GCATCTGGCAGGACCTCGGCCTCAGCGCAGAAGAGATCGAAACCTTGCGACAGGAGCGCGTGATATGA

Upstream 100 bases:

>100_bases
CGTCCGATGACGCTAGGTCTGCTGGTGCTCGCCATCCTGTTGGTGATCGTGCCGAGCTATCGGGCCCGCCGTGCCCGCGC
CCGTGCTGCCGGGGTGGCTG

Downstream 100 bases:

>100_bases
GCGATGTGAGTGATTGGTGGCGCACGTCGATCATCGACATGGAACCGGGCCGTATCGAGCTTCGGGGTCACCCAATTCAG
GATCTCATTGGCAACGTCAG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MGIKPLSGVRVLDLTNVLAGPYCCYQLALLGAEVIKVERPGTGDLARQLGADPERNKSLMGVSFLAQNAQKKSVTLDMKH
ETGKALLKRLVRSSDVLVENFRPGVMDRLGLGYEVLKAENPNLIYCAISGFGQDGPWKNNPAYDQIVQGISGVMSITGDG
ESAPLRVGYPLADTVGGMTAAFAISAALNDPERGAFLDISMTEAVISTMGWVVSNHLIAGQTPGAHGNENTTSAPSGTFA
CADGPINVAANRDEQWQSMARHLGRADLLDHPDYATREDRKRNRHMLRAELECVLRTRPAANWVAELNALGVPSGPVLTV
PQILEEPQIKDRGLIAEVETEGAPLSLAGAPVRFGTHRPVPDQAPPVLGADNTSIWQDLGLSAEEIETLRQERVI

Sequences:

>Translated_395_residues
MGIKPLSGVRVLDLTNVLAGPYCCYQLALLGAEVIKVERPGTGDLARQLGADPERNKSLMGVSFLAQNAQKKSVTLDMKH
ETGKALLKRLVRSSDVLVENFRPGVMDRLGLGYEVLKAENPNLIYCAISGFGQDGPWKNNPAYDQIVQGISGVMSITGDG
ESAPLRVGYPLADTVGGMTAAFAISAALNDPERGAFLDISMTEAVISTMGWVVSNHLIAGQTPGAHGNENTTSAPSGTFA
CADGPINVAANRDEQWQSMARHLGRADLLDHPDYATREDRKRNRHMLRAELECVLRTRPAANWVAELNALGVPSGPVLTV
PQILEEPQIKDRGLIAEVETEGAPLSLAGAPVRFGTHRPVPDQAPPVLGADNTSIWQDLGLSAEEIETLRQERVI
>Mature_394_residues
GIKPLSGVRVLDLTNVLAGPYCCYQLALLGAEVIKVERPGTGDLARQLGADPERNKSLMGVSFLAQNAQKKSVTLDMKHE
TGKALLKRLVRSSDVLVENFRPGVMDRLGLGYEVLKAENPNLIYCAISGFGQDGPWKNNPAYDQIVQGISGVMSITGDGE
SAPLRVGYPLADTVGGMTAAFAISAALNDPERGAFLDISMTEAVISTMGWVVSNHLIAGQTPGAHGNENTTSAPSGTFAC
ADGPINVAANRDEQWQSMARHLGRADLLDHPDYATREDRKRNRHMLRAELECVLRTRPAANWVAELNALGVPSGPVLTVP
QILEEPQIKDRGLIAEVETEGAPLSLAGAPVRFGTHRPVPDQAPPVLGADNTSIWQDLGLSAEEIETLRQERVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=382, Percent_Identity=34.5549738219895, Blast_Score=227, Evalue=1e-59,
Organism=Homo sapiens, GI300863124, Length=408, Percent_Identity=32.3529411764706, Blast_Score=213, Evalue=2e-55,
Organism=Homo sapiens, GI300863126, Length=379, Percent_Identity=31.9261213720317, Blast_Score=193, Evalue=2e-49,
Organism=Homo sapiens, GI13376042, Length=408, Percent_Identity=28.6764705882353, Blast_Score=165, Evalue=8e-41,
Organism=Homo sapiens, GI266456254, Length=401, Percent_Identity=30.1745635910224, Blast_Score=149, Evalue=6e-36,
Organism=Homo sapiens, GI42794625, Length=401, Percent_Identity=30.1745635910224, Blast_Score=148, Evalue=8e-36,
Organism=Homo sapiens, GI266458393, Length=275, Percent_Identity=34.9090909090909, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI266458397, Length=281, Percent_Identity=33.8078291814947, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI266458395, Length=147, Percent_Identity=39.4557823129252, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=39.4557823129252, Blast_Score=103, Evalue=3e-22,
Organism=Escherichia coli, GI87082093, Length=352, Percent_Identity=36.0795454545455, Blast_Score=234, Evalue=5e-63,
Organism=Escherichia coli, GI1788717, Length=423, Percent_Identity=31.2056737588652, Blast_Score=187, Evalue=8e-49,
Organism=Escherichia coli, GI1786222, Length=397, Percent_Identity=25.4408060453401, Blast_Score=102, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI32564160, Length=206, Percent_Identity=30.0970873786408, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=287, Percent_Identity=27.8745644599303, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=37.1212121212121, Blast_Score=251, Evalue=6e-67,
Organism=Drosophila melanogaster, GI24585488, Length=331, Percent_Identity=29.0030211480363, Blast_Score=107, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42381; Mature: 42250

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIKPLSGVRVLDLTNVLAGPYCCYQLALLGAEVIKVERPGTGDLARQLGADPERNKSLM
CCCCCCCCEEEEEHHHHHHCHHHHHHHHHHCHHHEEEECCCCHHHHHHHCCCCCCCCCHH
GVSFLAQNAQKKSVTLDMKHETGKALLKRLVRSSDVLVENFRPGVMDRLGLGYEVLKAEN
HHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCHHHHHCCCCHHHHHCCCEEEEECCC
PNLIYCAISGFGQDGPWKNNPAYDQIVQGISGVMSITGDGESAPLRVGYPLADTVGGMTA
CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCEEECCCHHHHHCHHHH
AFAISAALNDPERGAFLDISMTEAVISTMGWVVSNHLIAGQTPGAHGNENTTSAPSGTFA
HHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCEE
CADGPINVAANRDEQWQSMARHLGRADLLDHPDYATREDRKRNRHMLRAELECVLRTRPA
ECCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
ANWVAELNALGVPSGPVLTVPQILEEPQIKDRGLIAEVETEGAPLSLAGAPVRFGTHRPV
HHHHHHHHHCCCCCCCCEECHHHHCCCCCCCCCCEEEEECCCCCEEECCCCEECCCCCCC
PDQAPPVLGADNTSIWQDLGLSAEEIETLRQERVI
CCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
GIKPLSGVRVLDLTNVLAGPYCCYQLALLGAEVIKVERPGTGDLARQLGADPERNKSLM
CCCCCCCEEEEEHHHHHHCHHHHHHHHHHCHHHEEEECCCCHHHHHHHCCCCCCCCCHH
GVSFLAQNAQKKSVTLDMKHETGKALLKRLVRSSDVLVENFRPGVMDRLGLGYEVLKAEN
HHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCHHHHHCCCCHHHHHCCCEEEEECCC
PNLIYCAISGFGQDGPWKNNPAYDQIVQGISGVMSITGDGESAPLRVGYPLADTVGGMTA
CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCEEECCCHHHHHCHHHH
AFAISAALNDPERGAFLDISMTEAVISTMGWVVSNHLIAGQTPGAHGNENTTSAPSGTFA
HHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCEE
CADGPINVAANRDEQWQSMARHLGRADLLDHPDYATREDRKRNRHMLRAELECVLRTRPA
ECCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
ANWVAELNALGVPSGPVLTVPQILEEPQIKDRGLIAEVETEGAPLSLAGAPVRFGTHRPV
HHHHHHHHHCCCCCCCCEECHHHHCCCCCCCCCCEEEEECCCCCEEECCCCEECCCCCCC
PDQAPPVLGADNTSIWQDLGLSAEEIETLRQERVI
CCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]