Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082570

Identifier: 99082570

GI number: 99082570

Start: 2873298

End: 2874818

Strand: Reverse

Name: 99082570

Synonym: TM1040_2730

Alternate gene names: NA

Gene position: 2874818-2873298 (Counterclockwise)

Preceding gene: 99082571

Following gene: 99082569

Centisome position: 89.81

GC content: 60.36

Gene sequence:

>1521_bases
ATGCTCGAAGGTTTGATGATCGGCCTCTCTACGGCCTTTTCCGTTACAAACATCCTGATGGTGATCGGCGGCTGTCTGAT
CGGGACATTCATTGGGATGCTGCCGGGGCTTGGCCCCATGTCCATCATTGCAATCATGATCCCCGTTGCGATCACGCTGG
GCGATCCTTCTGCCGCGCTGATCTTGTTGGCCGGGGTCTATTATGGTGCGATCTTCGGGGGCTCGACCTCGTCGATCCTG
CTCAATGCGCCGGGGGTGGCGGGCACCGTGGCCTCCAGTTTCGATGGCTATCCGATGGCGCGCGCAGGCATGGCCGGCAA
GGCGCTGACCATTGCGGCGATCTCGTCCTTCATGGGGGGCACCATCGGTGCGATCCTGTTGATGGTCTTTGCGCCGATGC
TGTCGACGGTTGCCCTCCTGTTCCACTCGGCCGAGTATTTCGCGCTGATGGTCGTGGGTCTTTCCGCGATTGCGGCCTTT
GCAGGCACCGGCAATGTGGCCAAGGCCCTGATGATGACGCTTCTGGGTTTGATGATGGCCACGGTGGGCGAGGGCGCCTT
GTTCAATATGCCGCGCTTCACCATGGGGCTGATGGATCTGCAATCTGGCTTCAGCTTCATCACGCTGGCGATGGCAATGT
TTGCCCTGCCTGAAGCAATCTTTCTGGTAATGAACCCCAAACGCGCCGCCCAAGGGGGCGAGAACGGGGGCAAGATCACA
GGCTTGCGGATCTCCGGCCAGGAGGCGCGCAAGATCGCGCCCGTGATCGGACGCCAGTCCATCCAGGGCTTCTTTATCGG
GGTGCTCCCGGGCGCAGGCGCGACGATTGCGTCCTTCCTCGGGTATGCGGTGGAGCGCAACATTGCCACTGAATCCGAGC
AAAAGGAGTTCGGCAAAGGCTCCATCAAGGGGCTGGCCGCGCCAGAGACCGCAAACAATGCAGCCTGTACCGGTTCGTTT
GTACCGCTCCTGACGCTGGGTATTCCGGGATCCGGCACCACGGCGATCCTGTTGGGGGCGCTCATCGCACTCAATGTGAC
GCCGGGGCCGCGGCTAATGGTGGACAGCCCGCATATCTTCTGGGCGGTCATCATCTCGATGTATATCGGCAACCTCGTGC
TCTTGGTTCTGAACCTGCCGCTCATCCCCTATATCGCCAAAGTCCTGTCGATCCCGCGCAACTATCTCATTCCGTTCATT
CTGTTCTTCACCCTTATGGGATCCTACATCGGGCAGAACAACGCGACAGAGCTGTTAATCCTCGTGGGCTTCGGGATCTG
CGCGACAGTGCTGCGGTTTGCGGATTATCCGCTGGCGCCTCTGCTCATCGGCTTCATTCTGGGGCGGATGCTGGAGGATA
ATTTTGCCCGCTCGATGCAGATCTATGACGGGGTGTCCTTCATTCTGGACCGTCCGATGACGCTAGGTCTGCTGGTGCTC
GCCATCCTGTTGGTGATCGTGCCGAGCTATCGGGCCCGCCGTGCCCGCGCCCGTGCTGCCGGGGTGGCTGATGGGGATTA
A

Upstream 100 bases:

>100_bases
CGCGGCCCTTGCCACCGGCATCGTCTGGTATCTCGTTGAGGGCGTGCTGGGCATCTTCTTGCGGCCCTTGCCGTTCTTTC
TCGGATAATCGGAGGCTCAG

Downstream 100 bases:

>100_bases
ACCGCTCTCGGGTGTTCGGGTCCTCGACCTGACCAATGTGCTAGCAGGGCCGTATTGCTGTTATCAGCTGGCCCTGTTGG
GGGCAGAAGTCATCAAGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: ORFZ2 [H]

Number of amino acids: Translated: 506; Mature: 506

Protein sequence:

>506_residues
MLEGLMIGLSTAFSVTNILMVIGGCLIGTFIGMLPGLGPMSIIAIMIPVAITLGDPSAALILLAGVYYGAIFGGSTSSIL
LNAPGVAGTVASSFDGYPMARAGMAGKALTIAAISSFMGGTIGAILLMVFAPMLSTVALLFHSAEYFALMVVGLSAIAAF
AGTGNVAKALMMTLLGLMMATVGEGALFNMPRFTMGLMDLQSGFSFITLAMAMFALPEAIFLVMNPKRAAQGGENGGKIT
GLRISGQEARKIAPVIGRQSIQGFFIGVLPGAGATIASFLGYAVERNIATESEQKEFGKGSIKGLAAPETANNAACTGSF
VPLLTLGIPGSGTTAILLGALIALNVTPGPRLMVDSPHIFWAVIISMYIGNLVLLVLNLPLIPYIAKVLSIPRNYLIPFI
LFFTLMGSYIGQNNATELLILVGFGICATVLRFADYPLAPLLIGFILGRMLEDNFARSMQIYDGVSFILDRPMTLGLLVL
AILLVIVPSYRARRARARAAGVADGD

Sequences:

>Translated_506_residues
MLEGLMIGLSTAFSVTNILMVIGGCLIGTFIGMLPGLGPMSIIAIMIPVAITLGDPSAALILLAGVYYGAIFGGSTSSIL
LNAPGVAGTVASSFDGYPMARAGMAGKALTIAAISSFMGGTIGAILLMVFAPMLSTVALLFHSAEYFALMVVGLSAIAAF
AGTGNVAKALMMTLLGLMMATVGEGALFNMPRFTMGLMDLQSGFSFITLAMAMFALPEAIFLVMNPKRAAQGGENGGKIT
GLRISGQEARKIAPVIGRQSIQGFFIGVLPGAGATIASFLGYAVERNIATESEQKEFGKGSIKGLAAPETANNAACTGSF
VPLLTLGIPGSGTTAILLGALIALNVTPGPRLMVDSPHIFWAVIISMYIGNLVLLVLNLPLIPYIAKVLSIPRNYLIPFI
LFFTLMGSYIGQNNATELLILVGFGICATVLRFADYPLAPLLIGFILGRMLEDNFARSMQIYDGVSFILDRPMTLGLLVL
AILLVIVPSYRARRARARAAGVADGD
>Mature_506_residues
MLEGLMIGLSTAFSVTNILMVIGGCLIGTFIGMLPGLGPMSIIAIMIPVAITLGDPSAALILLAGVYYGAIFGGSTSSIL
LNAPGVAGTVASSFDGYPMARAGMAGKALTIAAISSFMGGTIGAILLMVFAPMLSTVALLFHSAEYFALMVVGLSAIAAF
AGTGNVAKALMMTLLGLMMATVGEGALFNMPRFTMGLMDLQSGFSFITLAMAMFALPEAIFLVMNPKRAAQGGENGGKIT
GLRISGQEARKIAPVIGRQSIQGFFIGVLPGAGATIASFLGYAVERNIATESEQKEFGKGSIKGLAAPETANNAACTGSF
VPLLTLGIPGSGTTAILLGALIALNVTPGPRLMVDSPHIFWAVIISMYIGNLVLLVLNLPLIPYIAKVLSIPRNYLIPFI
LFFTLMGSYIGQNNATELLILVGFGICATVLRFADYPLAPLLIGFILGRMLEDNFARSMQIYDGVSFILDRPMTLGLLVL
AILLVIVPSYRARRARARAAGVADGD

Specific function: Unknown

COG id: COG3333

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002823 [H]

Pfam domain/function: PF01970 DUF112 [H]

EC number: NA

Molecular weight: Translated: 52670; Mature: 52670

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEGLMIGLSTAFSVTNILMVIGGCLIGTFIGMLPGLGPMSIIAIMIPVAITLGDPSAAL
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCHHHH
ILLAGVYYGAIFGGSTSSILLNAPGVAGTVASSFDGYPMARAGMAGKALTIAAISSFMGG
HHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHCH
TIGAILLMVFAPMLSTVALLFHSAEYFALMVVGLSAIAAFAGTGNVAKALMMTLLGLMMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TVGEGALFNMPRFTMGLMDLQSGFSFITLAMAMFALPEAIFLVMNPKRAAQGGENGGKIT
HCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEECCHHHHCCCCCCCEEE
GLRISGQEARKIAPVIGRQSIQGFFIGVLPGAGATIASFLGYAVERNIATESEQKEFGKG
EEEECCHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCC
SIKGLAAPETANNAACTGSFVPLLTLGIPGSGTTAILLGALIALNVTPGPRLMVDSPHIF
CCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCHHHHHHHHHHHEECCCCCEEEECCCHHH
WAVIISMYIGNLVLLVLNLPLIPYIAKVLSIPRNYLIPFILFFTLMGSYIGQNNATELLI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LVGFGICATVLRFADYPLAPLLIGFILGRMLEDNFARSMQIYDGVSFILDRPMTLGLLVL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
AILLVIVPSYRARRARARAAGVADGD
HHHHHHHCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLEGLMIGLSTAFSVTNILMVIGGCLIGTFIGMLPGLGPMSIIAIMIPVAITLGDPSAAL
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCHHHH
ILLAGVYYGAIFGGSTSSILLNAPGVAGTVASSFDGYPMARAGMAGKALTIAAISSFMGG
HHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHCH
TIGAILLMVFAPMLSTVALLFHSAEYFALMVVGLSAIAAFAGTGNVAKALMMTLLGLMMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TVGEGALFNMPRFTMGLMDLQSGFSFITLAMAMFALPEAIFLVMNPKRAAQGGENGGKIT
HCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEECCHHHHCCCCCCCEEE
GLRISGQEARKIAPVIGRQSIQGFFIGVLPGAGATIASFLGYAVERNIATESEQKEFGKG
EEEECCHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCC
SIKGLAAPETANNAACTGSFVPLLTLGIPGSGTTAILLGALIALNVTPGPRLMVDSPHIF
CCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCHHHHHHHHHHHEECCCCCEEEECCCHHH
WAVIISMYIGNLVLLVLNLPLIPYIAKVLSIPRNYLIPFILFFTLMGSYIGQNNATELLI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LVGFGICATVLRFADYPLAPLLIGFILGRMLEDNFARSMQIYDGVSFILDRPMTLGLLVL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
AILLVIVPSYRARRARARAAGVADGD
HHHHHHHCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8672817 [H]