| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082567
Identifier: 99082567
GI number: 99082567
Start: 2870342
End: 2871370
Strand: Reverse
Name: 99082567
Synonym: TM1040_2727
Alternate gene names: NA
Gene position: 2871370-2870342 (Counterclockwise)
Preceding gene: 99082568
Following gene: 99082565
Centisome position: 89.7
GC content: 61.22
Gene sequence:
>1029_bases ATGACCCTAACTGACGTGTTTGGCCTTGTGGGCGCGCTTGGCGTTGCCGTGCTTGGCACATTGATTTTTGAAGCGATTGG ATTTCCCTCGGCCCCCCTGACCGGTTCAGCGGCAGCGGTGTCTCTGGCTGCACTGTTTGGTTTGCCGATCCGGATGCCCG TGTGGCTCAGGACCACGGCCTTTGTGCTCTTGGGGATCAATATCGGCAGCAGCGTGACGCGTGAAATGCTGGCCTCGGCG CTGGCATGGCCCGTGACCATTGCGATCCTTGCAGTGAGCCTCTTTGTGTCTTTGCAGATCAGCCGCATCGGTCTTGAGCG CTGGATGCGGTTCAGTCCGCGTGATGCGGCTCTGGCGGCTGCGCCGGGGCATCTGAGCTATGTGCTGGCGCTGTCGCTCA GTGACGGAGGGCAGACCTCTCGGATTGCGGTGGTCCAGAGCATCCGGGTGCTGTTTCTCACCCTTTGTGTGCCGGTGCTG GTCTCGTTGGTGTTTGGCGCAACGGGTGTGGAGCTCATGCCCGAATATGTGCTCTCAAACTGGCATCTGGCGGCTTTGGT GGGGGTCACTTTGGTGGTGGGCGCAGTGTTTGATCGATTGAACATTCCCGCCGCCTATTTGCTGGCGGGCATCTTTTGCA GCGCCGCCGGACATATCTTTGCGGTGACACCGGGGCGACCTCCGGAAGCTGCAACCATTCTGGCGTTTCTGGTGATGGGG ACGCTGATTGGCTCGCGCTTTGTGGGACAGAGGCTTGCAGATTTGAAGGTCGATTTTGCCGCGGGGCTTTGGGTGACGGG CATCAATGTCACGGTCACGCTGATCGCGATTGGTGTGGCCATGCAGGTCATGGGCCTGTCTCCGGCCCTGCTGATCGTGG CGTTTGCCCCCGGCGGGGTAGAGGCCATGGCCGCCATCGCGGTCACCCTCGGGCTTGATCCAGCCTTTGTGGCCGCCCAT CACGTAATGCGGCTGATGATCCTGACCGTTCTGATGCCGCTGGCATTGCGCCGCGCGAAGGCGGGGTAA
Upstream 100 bases:
>100_bases TGCCTGTCGCGTTCGGTGGGCATTCTGTCCCACGCATGGGAGCAGCAGCAACAGGGCGGGCGCAACAAGGGACCGACCCC GCCCAAATACAGATGGACGT
Downstream 100 bases:
>100_bases AAAATCCCCGGCGCAGCGGGCGCCGGGGATTGTGCAAAGAGGTTATTGAGCCTCCTGCGCCTCTTGTTCGATTTCAGCCC CGAGGGTGGACACATCGCGG
Product: putative ammonia monooxygenase
Products: NA
Alternate protein names: Ammonia Monooxygenase Superfamily; Monooxygenase; AbrB Family Transcriptional Regulator; AbrB Protein; Ammonia Monooxygenase Superfamily Protein; Membrane-Associated Ammonia Monooxygenase
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MTLTDVFGLVGALGVAVLGTLIFEAIGFPSAPLTGSAAAVSLAALFGLPIRMPVWLRTTAFVLLGINIGSSVTREMLASA LAWPVTIAILAVSLFVSLQISRIGLERWMRFSPRDAALAAAPGHLSYVLALSLSDGGQTSRIAVVQSIRVLFLTLCVPVL VSLVFGATGVELMPEYVLSNWHLAALVGVTLVVGAVFDRLNIPAAYLLAGIFCSAAGHIFAVTPGRPPEAATILAFLVMG TLIGSRFVGQRLADLKVDFAAGLWVTGINVTVTLIAIGVAMQVMGLSPALLIVAFAPGGVEAMAAIAVTLGLDPAFVAAH HVMRLMILTVLMPLALRRAKAG
Sequences:
>Translated_342_residues MTLTDVFGLVGALGVAVLGTLIFEAIGFPSAPLTGSAAAVSLAALFGLPIRMPVWLRTTAFVLLGINIGSSVTREMLASA LAWPVTIAILAVSLFVSLQISRIGLERWMRFSPRDAALAAAPGHLSYVLALSLSDGGQTSRIAVVQSIRVLFLTLCVPVL VSLVFGATGVELMPEYVLSNWHLAALVGVTLVVGAVFDRLNIPAAYLLAGIFCSAAGHIFAVTPGRPPEAATILAFLVMG TLIGSRFVGQRLADLKVDFAAGLWVTGINVTVTLIAIGVAMQVMGLSPALLIVAFAPGGVEAMAAIAVTLGLDPAFVAAH HVMRLMILTVLMPLALRRAKAG >Mature_341_residues TLTDVFGLVGALGVAVLGTLIFEAIGFPSAPLTGSAAAVSLAALFGLPIRMPVWLRTTAFVLLGINIGSSVTREMLASAL AWPVTIAILAVSLFVSLQISRIGLERWMRFSPRDAALAAAPGHLSYVLALSLSDGGQTSRIAVVQSIRVLFLTLCVPVLV SLVFGATGVELMPEYVLSNWHLAALVGVTLVVGAVFDRLNIPAAYLLAGIFCSAAGHIFAVTPGRPPEAATILAFLVMGT LIGSRFVGQRLADLKVDFAAGLWVTGINVTVTLIAIGVAMQVMGLSPALLIVAFAPGGVEAMAAIAVTLGLDPAFVAAHH VMRLMILTVLMPLALRRAKAG
Specific function: Unknown
COG id: COG3180
COG function: function code R; Putative ammonia monooxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35471; Mature: 35340
Theoretical pI: Translated: 9.77; Mature: 9.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLTDVFGLVGALGVAVLGTLIFEAIGFPSAPLTGSAAAVSLAALFGLPIRMPVWLRTTA CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH FVLLGINIGSSVTREMLASALAWPVTIAILAVSLFVSLQISRIGLERWMRFSPRDAALAA HHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCC APGHLSYVLALSLSDGGQTSRIAVVQSIRVLFLTLCVPVLVSLVFGATGVELMPEYVLSN CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC WHLAALVGVTLVVGAVFDRLNIPAAYLLAGIFCSAAGHIFAVTPGRPPEAATILAFLVMG CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH TLIGSRFVGQRLADLKVDFAAGLWVTGINVTVTLIAIGVAMQVMGLSPALLIVAFAPGGV HHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCH EAMAAIAVTLGLDPAFVAAHHVMRLMILTVLMPLALRRAKAG HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TLTDVFGLVGALGVAVLGTLIFEAIGFPSAPLTGSAAAVSLAALFGLPIRMPVWLRTTA CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH FVLLGINIGSSVTREMLASALAWPVTIAILAVSLFVSLQISRIGLERWMRFSPRDAALAA HHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCC APGHLSYVLALSLSDGGQTSRIAVVQSIRVLFLTLCVPVLVSLVFGATGVELMPEYVLSN CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC WHLAALVGVTLVVGAVFDRLNIPAAYLLAGIFCSAAGHIFAVTPGRPPEAATILAFLVMG CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH TLIGSRFVGQRLADLKVDFAAGLWVTGINVTVTLIAIGVAMQVMGLSPALLIVAFAPGGV HHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCH EAMAAIAVTLGLDPAFVAAHHVMRLMILTVLMPLALRRAKAG HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA