| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99082565
Identifier: 99082565
GI number: 99082565
Start: 2868869
End: 2869456
Strand: Reverse
Name: 99082565
Synonym: TM1040_2725
Alternate gene names: NA
Gene position: 2869456-2868869 (Counterclockwise)
Preceding gene: 99082567
Following gene: 99082562
Centisome position: 89.64
GC content: 62.07
Gene sequence:
>588_bases ATGACCCAGACCAGCCACCCAGTCGAAGACGTCCTGGACCAGACCGACGCCCTCTTGCGCGAGGGGGCGGACGGGTTGCG GGTGTCGGACCTCATGGATGAGTTGGGGGTCAAATCGATTGCTGCGGTGCTCTTGGCTCCGTCGCTCGCATTGGTCTCGC CGCTCAGTGGCATTCCGCTGTTTTCCTCTGCGTGCGGCGTCACGATTGCGCTGATCTCGGTACAGATGCTGATGGGGCGC AACCACCTGTGGATGCCCGAGGTGCTGTCGAAACGGTCGTTGCCAGCGGACAAGACACAATATGCCATTCGCGCGCTGCG CGCATTTGCAGCATGGCTCGATCGTCGGTTCAAACGCCGGTTGACGTCCTTGCTGACGCCGCCGTTCTTGCGGGTGATAC AGGGCATCTGCCTGCTCTGCGGTCTGATTATGCCCTTTCTCGAAATCGTGCCGTTTACCTCGTCGATTTTGGGGGGCGTG GTCGCTCTGCTGGCTTTGTCAATGTTGATCGGGGACGGGCTGATCGCGCTGGTGACGGTCGCGGGACTGGGGCTGGCACT TGGCGGGGCCGCCCTACACCTGCTCTGA
Upstream 100 bases:
>100_bases CCTCCGTTTGAGCCGCTGACATAGCCGCGAGGCAGGAGGGAACTTTTTTGCTGTCGCCACGTTTTATCTCCGAGACGGAA GTTACGAGAAAACGGATGCG
Downstream 100 bases:
>100_bases CGGGTGCGGCGCACCCGAAGCCCAGACCAGAGTCCACACGCGCCAAGACGCCCGCCCCAGCCGGGGCAGGACCGATCTTG GCAAATCAGCGATGATCGCG
Product: exopolysaccharide synthesis, ExoD
Products: NA
Alternate protein names: Exopolysaccharide Synthesis Protein; ExoD-Like Membrane Protein; ExoD Family Exopolysaccharide Synthesis Protein; ABC Transporter Permease; Exopolysaccharide Synthesis ExoD Protein; ABC-Type Transport System Permease Component; ABC Molybdate Transporter Inner Membrane Subunit
Number of amino acids: Translated: 195; Mature: 194
Protein sequence:
>195_residues MTQTSHPVEDVLDQTDALLREGADGLRVSDLMDELGVKSIAAVLLAPSLALVSPLSGIPLFSSACGVTIALISVQMLMGR NHLWMPEVLSKRSLPADKTQYAIRALRAFAAWLDRRFKRRLTSLLTPPFLRVIQGICLLCGLIMPFLEIVPFTSSILGGV VALLALSMLIGDGLIALVTVAGLGLALGGAALHLL
Sequences:
>Translated_195_residues MTQTSHPVEDVLDQTDALLREGADGLRVSDLMDELGVKSIAAVLLAPSLALVSPLSGIPLFSSACGVTIALISVQMLMGR NHLWMPEVLSKRSLPADKTQYAIRALRAFAAWLDRRFKRRLTSLLTPPFLRVIQGICLLCGLIMPFLEIVPFTSSILGGV VALLALSMLIGDGLIALVTVAGLGLALGGAALHLL >Mature_194_residues TQTSHPVEDVLDQTDALLREGADGLRVSDLMDELGVKSIAAVLLAPSLALVSPLSGIPLFSSACGVTIALISVQMLMGRN HLWMPEVLSKRSLPADKTQYAIRALRAFAAWLDRRFKRRLTSLLTPPFLRVIQGICLLCGLIMPFLEIVPFTSSILGGVV ALLALSMLIGDGLIALVTVAGLGLALGGAALHLL
Specific function: Unknown
COG id: COG3932
COG function: function code R; Uncharacterized ABC-type transport system, permease components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20707; Mature: 20576
Theoretical pI: Translated: 8.08; Mature: 8.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTSHPVEDVLDQTDALLREGADGLRVSDLMDELGVKSIAAVLLAPSLALVSPLSGIPL CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH FSSACGVTIALISVQMLMGRNHLWMPEVLSKRSLPADKTQYAIRALRAFAAWLDRRFKRR HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LTSLLTPPFLRVIQGICLLCGLIMPFLEIVPFTSSILGGVVALLALSMLIGDGLIALVTV HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH AGLGLALGGAALHLL HHHHHHHHHHHHHCC >Mature Secondary Structure TQTSHPVEDVLDQTDALLREGADGLRVSDLMDELGVKSIAAVLLAPSLALVSPLSGIPL CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH FSSACGVTIALISVQMLMGRNHLWMPEVLSKRSLPADKTQYAIRALRAFAAWLDRRFKRR HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LTSLLTPPFLRVIQGICLLCGLIMPFLEIVPFTSSILGGVVALLALSMLIGDGLIALVTV HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH AGLGLALGGAALHLL HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA