Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082565

Identifier: 99082565

GI number: 99082565

Start: 2868869

End: 2869456

Strand: Reverse

Name: 99082565

Synonym: TM1040_2725

Alternate gene names: NA

Gene position: 2869456-2868869 (Counterclockwise)

Preceding gene: 99082567

Following gene: 99082562

Centisome position: 89.64

GC content: 62.07

Gene sequence:

>588_bases
ATGACCCAGACCAGCCACCCAGTCGAAGACGTCCTGGACCAGACCGACGCCCTCTTGCGCGAGGGGGCGGACGGGTTGCG
GGTGTCGGACCTCATGGATGAGTTGGGGGTCAAATCGATTGCTGCGGTGCTCTTGGCTCCGTCGCTCGCATTGGTCTCGC
CGCTCAGTGGCATTCCGCTGTTTTCCTCTGCGTGCGGCGTCACGATTGCGCTGATCTCGGTACAGATGCTGATGGGGCGC
AACCACCTGTGGATGCCCGAGGTGCTGTCGAAACGGTCGTTGCCAGCGGACAAGACACAATATGCCATTCGCGCGCTGCG
CGCATTTGCAGCATGGCTCGATCGTCGGTTCAAACGCCGGTTGACGTCCTTGCTGACGCCGCCGTTCTTGCGGGTGATAC
AGGGCATCTGCCTGCTCTGCGGTCTGATTATGCCCTTTCTCGAAATCGTGCCGTTTACCTCGTCGATTTTGGGGGGCGTG
GTCGCTCTGCTGGCTTTGTCAATGTTGATCGGGGACGGGCTGATCGCGCTGGTGACGGTCGCGGGACTGGGGCTGGCACT
TGGCGGGGCCGCCCTACACCTGCTCTGA

Upstream 100 bases:

>100_bases
CCTCCGTTTGAGCCGCTGACATAGCCGCGAGGCAGGAGGGAACTTTTTTGCTGTCGCCACGTTTTATCTCCGAGACGGAA
GTTACGAGAAAACGGATGCG

Downstream 100 bases:

>100_bases
CGGGTGCGGCGCACCCGAAGCCCAGACCAGAGTCCACACGCGCCAAGACGCCCGCCCCAGCCGGGGCAGGACCGATCTTG
GCAAATCAGCGATGATCGCG

Product: exopolysaccharide synthesis, ExoD

Products: NA

Alternate protein names: Exopolysaccharide Synthesis Protein; ExoD-Like Membrane Protein; ExoD Family Exopolysaccharide Synthesis Protein; ABC Transporter Permease; Exopolysaccharide Synthesis ExoD Protein; ABC-Type Transport System Permease Component; ABC Molybdate Transporter Inner Membrane Subunit

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MTQTSHPVEDVLDQTDALLREGADGLRVSDLMDELGVKSIAAVLLAPSLALVSPLSGIPLFSSACGVTIALISVQMLMGR
NHLWMPEVLSKRSLPADKTQYAIRALRAFAAWLDRRFKRRLTSLLTPPFLRVIQGICLLCGLIMPFLEIVPFTSSILGGV
VALLALSMLIGDGLIALVTVAGLGLALGGAALHLL

Sequences:

>Translated_195_residues
MTQTSHPVEDVLDQTDALLREGADGLRVSDLMDELGVKSIAAVLLAPSLALVSPLSGIPLFSSACGVTIALISVQMLMGR
NHLWMPEVLSKRSLPADKTQYAIRALRAFAAWLDRRFKRRLTSLLTPPFLRVIQGICLLCGLIMPFLEIVPFTSSILGGV
VALLALSMLIGDGLIALVTVAGLGLALGGAALHLL
>Mature_194_residues
TQTSHPVEDVLDQTDALLREGADGLRVSDLMDELGVKSIAAVLLAPSLALVSPLSGIPLFSSACGVTIALISVQMLMGRN
HLWMPEVLSKRSLPADKTQYAIRALRAFAAWLDRRFKRRLTSLLTPPFLRVIQGICLLCGLIMPFLEIVPFTSSILGGVV
ALLALSMLIGDGLIALVTVAGLGLALGGAALHLL

Specific function: Unknown

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20707; Mature: 20576

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTSHPVEDVLDQTDALLREGADGLRVSDLMDELGVKSIAAVLLAPSLALVSPLSGIPL
CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
FSSACGVTIALISVQMLMGRNHLWMPEVLSKRSLPADKTQYAIRALRAFAAWLDRRFKRR
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LTSLLTPPFLRVIQGICLLCGLIMPFLEIVPFTSSILGGVVALLALSMLIGDGLIALVTV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
AGLGLALGGAALHLL
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
TQTSHPVEDVLDQTDALLREGADGLRVSDLMDELGVKSIAAVLLAPSLALVSPLSGIPL
CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
FSSACGVTIALISVQMLMGRNHLWMPEVLSKRSLPADKTQYAIRALRAFAAWLDRRFKRR
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LTSLLTPPFLRVIQGICLLCGLIMPFLEIVPFTSSILGGVVALLALSMLIGDGLIALVTV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
AGLGLALGGAALHLL
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA