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The map label for this gene is ddpB [H]

Identifier: 99082555

GI number: 99082555

Start: 2859969

End: 2861120

Strand: Direct

Name: ddpB [H]

Synonym: TM1040_2715

Alternate gene names: 99082555

Gene position: 2859969-2861120 (Clockwise)

Preceding gene: 99082551

Following gene: 99082556

Centisome position: 89.35

GC content: 60.07

Gene sequence:

>1152_bases
ATGCCTGAGACACCAACCACCGCGTCCGACGCCGCTTTGACGCAGAGTTTTCATAATGCCAGATCTCCGGCGCGCCGGGG
ATTTGAGAGGAAAAAGGGGACAAGACCCTTGAGCACAGCCGCGCCTTCACACGCCGGGCTGAGAAAGACCGCCAGCGCTT
TTGGCGGCTTTGTCATCGTCACTTTCCTGACTTTTGTCGGATTGATGGCGATCACTTTCTTCATCGGCCGCGTGATCCCG
ATTGACCCGGTTCTGGCCGTGGTCGGAGATCGCGCCACGCAAGAACAATACGACGCCGCCCGCATCGCCATGGGGTTGGA
TCAGCCACTGGTGGTACAGTTCATCACCTATGTGGGCGATGTGTTTCAGGGCGACCTTGGCCATTCCGTTTCCACCAACC
GCCCCGTCGCAGAGGATCTGGCCCGTGTCTTCCCCGCGACGCTCGAGATGGCGACACTTGGGATCATCATCGGCGTCGGC
ATGGGCGTTCCGCTGGGTGTCTGGGCCGCTGCAAGGCAAGGCACATGGGTGGATCAGTTGATCCGCGTCTTTGCACTGCT
GGGTTACTCTGTTCCTGCCTTCTGGCTTGGTCTTGTGGGGCTGGTCGTATTTTACGCGGGCCTTGGCTGGGTCGGCGGTC
CAGGGCGTGTCGACATTTTCTACGAGGGGCTGGTGGAACCGCGCACAGGCCTCTTGCTGGTTGATTCCCTGATCGTGGGC
GACTGGGAGGTGTTCTGGAGCGCGCTCGACCACCTGATCCTGCCTGCCACCATCCTTGGGTTCTTCTCGCTGGCCTATAT
CGCGCGCATGACCCGCAGCTTCATGCTGGATCAGCTCGGGCAGGAATATATCACCACCGCCCGCGTCAAAGGCGTGTCGG
AATGGCGGGTGATCTGGACCCACGGCTTTCGTCCGATCCGGGTGCCACTGATCACGGTGATCGGCCTCTCTTATGCCGCC
TTGCTCGAAGGCTCGGTGATGATCGAGACGGTCTTTAGCTGGCCAGGCATCGGCAACTATCTGACCGTGGCACTGCTCAA
CGCCGATATGAATGCCGTCCTTGGCGCAACCTTAGTGATCGGGTCGGTCTTCATTCTCATCAACAAGCTGTCGGATGTGC
TCTACCGCATTCTCGACCCGCGCAGCCGATAG

Upstream 100 bases:

>100_bases
TGGCACCAGTTCGGGTCACCCGGCTGGATGTTCTTCGTGCAGGCTACAAAAAAAATTTTTGTCAGGCAAAAATTTTTTTG
CACATTTCGAAAATTGTTTT

Downstream 100 bases:

>100_bases
GAGGGTGCCATGACAACGATGACAAACTGGCTGCTCGACGACTCCCCCAGCTCCCGCCTGCAGGCCTCCTTGGGTCACAG
CTACCGTGTGACACGGATGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 382

Protein sequence:

>383_residues
MPETPTTASDAALTQSFHNARSPARRGFERKKGTRPLSTAAPSHAGLRKTASAFGGFVIVTFLTFVGLMAITFFIGRVIP
IDPVLAVVGDRATQEQYDAARIAMGLDQPLVVQFITYVGDVFQGDLGHSVSTNRPVAEDLARVFPATLEMATLGIIIGVG
MGVPLGVWAAARQGTWVDQLIRVFALLGYSVPAFWLGLVGLVVFYAGLGWVGGPGRVDIFYEGLVEPRTGLLLVDSLIVG
DWEVFWSALDHLILPATILGFFSLAYIARMTRSFMLDQLGQEYITTARVKGVSEWRVIWTHGFRPIRVPLITVIGLSYAA
LLEGSVMIETVFSWPGIGNYLTVALLNADMNAVLGATLVIGSVFILINKLSDVLYRILDPRSR

Sequences:

>Translated_383_residues
MPETPTTASDAALTQSFHNARSPARRGFERKKGTRPLSTAAPSHAGLRKTASAFGGFVIVTFLTFVGLMAITFFIGRVIP
IDPVLAVVGDRATQEQYDAARIAMGLDQPLVVQFITYVGDVFQGDLGHSVSTNRPVAEDLARVFPATLEMATLGIIIGVG
MGVPLGVWAAARQGTWVDQLIRVFALLGYSVPAFWLGLVGLVVFYAGLGWVGGPGRVDIFYEGLVEPRTGLLLVDSLIVG
DWEVFWSALDHLILPATILGFFSLAYIARMTRSFMLDQLGQEYITTARVKGVSEWRVIWTHGFRPIRVPLITVIGLSYAA
LLEGSVMIETVFSWPGIGNYLTVALLNADMNAVLGATLVIGSVFILINKLSDVLYRILDPRSR
>Mature_382_residues
PETPTTASDAALTQSFHNARSPARRGFERKKGTRPLSTAAPSHAGLRKTASAFGGFVIVTFLTFVGLMAITFFIGRVIPI
DPVLAVVGDRATQEQYDAARIAMGLDQPLVVQFITYVGDVFQGDLGHSVSTNRPVAEDLARVFPATLEMATLGIIIGVGM
GVPLGVWAAARQGTWVDQLIRVFALLGYSVPAFWLGLVGLVVFYAGLGWVGGPGRVDIFYEGLVEPRTGLLLVDSLIVGD
WEVFWSALDHLILPATILGFFSLAYIARMTRSFMLDQLGQEYITTARVKGVSEWRVIWTHGFRPIRVPLITVIGLSYAAL
LEGSVMIETVFSWPGIGNYLTVALLNADMNAVLGATLVIGSVFILINKLSDVLYRILDPRSR

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787761, Length=319, Percent_Identity=43.5736677115987, Blast_Score=233, Evalue=1e-62,
Organism=Escherichia coli, GI1789965, Length=324, Percent_Identity=40.7407407407407, Blast_Score=232, Evalue=4e-62,
Organism=Escherichia coli, GI1789888, Length=291, Percent_Identity=34.3642611683849, Blast_Score=174, Evalue=9e-45,
Organism=Escherichia coli, GI1787053, Length=313, Percent_Identity=35.1437699680511, Blast_Score=172, Evalue=5e-44,
Organism=Escherichia coli, GI1787550, Length=270, Percent_Identity=32.962962962963, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1787497, Length=318, Percent_Identity=29.874213836478, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1788504, Length=280, Percent_Identity=27.5, Blast_Score=105, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 41574; Mature: 41443

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPETPTTASDAALTQSFHNARSPARRGFERKKGTRPLSTAAPSHAGLRKTASAFGGFVIV
CCCCCCCCHHHHHHHHHHHHCCHHHHCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
TFLTFVGLMAITFFIGRVIPIDPVLAVVGDRATQEQYDAARIAMGLDQPLVVQFITYVGD
HHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VFQGDLGHSVSTNRPVAEDLARVFPATLEMATLGIIIGVGMGVPLGVWAAARQGTWVDQL
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHH
IRVFALLGYSVPAFWLGLVGLVVFYAGLGWVGGPGRVDIFYEGLVEPRTGLLLVDSLIVG
HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHH
DWEVFWSALDHLILPATILGFFSLAYIARMTRSFMLDQLGQEYITTARVKGVSEWRVIWT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEE
HGFRPIRVPLITVIGLSYAALLEGSVMIETVFSWPGIGNYLTVALLNADMNAVLGATLVI
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHEECCCHHHHHHHHHHH
GSVFILINKLSDVLYRILDPRSR
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PETPTTASDAALTQSFHNARSPARRGFERKKGTRPLSTAAPSHAGLRKTASAFGGFVIV
CCCCCCCHHHHHHHHHHHHCCHHHHCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
TFLTFVGLMAITFFIGRVIPIDPVLAVVGDRATQEQYDAARIAMGLDQPLVVQFITYVGD
HHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VFQGDLGHSVSTNRPVAEDLARVFPATLEMATLGIIIGVGMGVPLGVWAAARQGTWVDQL
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHH
IRVFALLGYSVPAFWLGLVGLVVFYAGLGWVGGPGRVDIFYEGLVEPRTGLLLVDSLIVG
HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHH
DWEVFWSALDHLILPATILGFFSLAYIARMTRSFMLDQLGQEYITTARVKGVSEWRVIWT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEE
HGFRPIRVPLITVIGLSYAALLEGSVMIETVFSWPGIGNYLTVALLNADMNAVLGATLVI
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHEECCCHHHHHHHHHHH
GSVFILINKLSDVLYRILDPRSR
HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]