Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082551

Identifier: 99082551

GI number: 99082551

Start: 2855588

End: 2856346

Strand: Direct

Name: 99082551

Synonym: TM1040_2711

Alternate gene names: NA

Gene position: 2855588-2856346 (Clockwise)

Preceding gene: 99082550

Following gene: 99082555

Centisome position: 89.21

GC content: 63.9

Gene sequence:

>759_bases
ATGATGACGCCTTTTCCCTACGAGATCGCAGAGGATCCGCGCCCGCGCCTGGGGCTCATTGCCTTGCAGGTGGATGAAAC
CATCGAAGAGGATTTTCGGGTAATGTTCCCGCGCCAGGCTGCGCGGCTACATGTGAGCCGGGTGCCATCGGGGGCAGAGC
TCACTCCTGAGACCATCGCCGGGATGGAAGACGATCTGCCGGCGGCTGCCCGCCTGCTACCGCCCGCGGCGCGCTTTGAG
GTCATCGCCTACGGCTGCACGTCGGGAACCGGCCAGATCGGCGTCGAGCGTGTCGCAGAGTTGATCCAGACAGGCGCCAC
CACCAAGGCGGTCAGCAATCCGCTGAGCGCTGCTATAGCCGCTTTGAACGCGCTGGGGGTCTCGCGTGTCGGGATCGTCT
CGCCCTATATTGACGCCGTGGCCGCGCCGATCCGTGCAGCATTTGTTGACGCGGGCCTATCGGTGCCTGATATGCTCGGG
TTTGGCGAGGAAGTGGAGGCACGCGTCGCCCGGATCGCACCCCGGTCCATTTGCGCTGCGGCCCATGCGCTCGGCGAGCG
CAGCACGCTAGATGCGGTGTTTCTCTCCTGCACCAACCTACGCACGCTTGATGTGATCCCGCTGCTCGAACAGCAACTTG
GCCTTCCGGTTCTCAGCTCCAATCAGGTCCTGGCTTGGCACATGGCAGCGTTGGCGGGTCTTGAGCTTGATGATCTCGAA
GTGCCGGGGCAGCTTGGCAAAAAGGCGGCGCAGCCCTGA

Upstream 100 bases:

>100_bases
GCGCGGATCGGATTCTCGTGCAGGAGGAGAACATCGTCCTACGCGACAGCGGCGCGGAGCTCTTGTCCCCGCGCGCACCC
GCAGAATTGCCGGAGCTGCT

Downstream 100 bases:

>100_bases
GCCACGCCGCCCTTCTGATGCGTCCCCCGGAGAGGGCCCGGAGAGGGCGTTTAGACGCGCACCATGTCGCGCGGCATCTC
GGAGAAGATCTCCGCGCCGT

Product: Asp/Glu racemase

Products: NA

Alternate protein names: Asp/Glu/Hydantoin Racemase; Arylmalonate Decarboxylase; Asp/Glu/Hydantoin Racemase Family Protein; Decarboxylase; Ectoine Utilization Protein EutA; Maleate Cis-Trans Isomerase; Arylmalonate Decarboxylase Protein; Asp/Glu/Hydantoin Racemase Superfamily; Asp/Glu/Hydantoin Racemase Family; Racemase; Isomerase; Pyridoxal-5-Phosphate-Dependent Beta Subunit

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MMTPFPYEIAEDPRPRLGLIALQVDETIEEDFRVMFPRQAARLHVSRVPSGAELTPETIAGMEDDLPAAARLLPPAARFE
VIAYGCTSGTGQIGVERVAELIQTGATTKAVSNPLSAAIAALNALGVSRVGIVSPYIDAVAAPIRAAFVDAGLSVPDMLG
FGEEVEARVARIAPRSICAAAHALGERSTLDAVFLSCTNLRTLDVIPLLEQQLGLPVLSSNQVLAWHMAALAGLELDDLE
VPGQLGKKAAQP

Sequences:

>Translated_252_residues
MMTPFPYEIAEDPRPRLGLIALQVDETIEEDFRVMFPRQAARLHVSRVPSGAELTPETIAGMEDDLPAAARLLPPAARFE
VIAYGCTSGTGQIGVERVAELIQTGATTKAVSNPLSAAIAALNALGVSRVGIVSPYIDAVAAPIRAAFVDAGLSVPDMLG
FGEEVEARVARIAPRSICAAAHALGERSTLDAVFLSCTNLRTLDVIPLLEQQLGLPVLSSNQVLAWHMAALAGLELDDLE
VPGQLGKKAAQP
>Mature_252_residues
MMTPFPYEIAEDPRPRLGLIALQVDETIEEDFRVMFPRQAARLHVSRVPSGAELTPETIAGMEDDLPAAARLLPPAARFE
VIAYGCTSGTGQIGVERVAELIQTGATTKAVSNPLSAAIAALNALGVSRVGIVSPYIDAVAAPIRAAFVDAGLSVPDMLG
FGEEVEARVARIAPRSICAAAHALGERSTLDAVFLSCTNLRTLDVIPLLEQQLGLPVLSSNQVLAWHMAALAGLELDDLE
VPGQLGKKAAQP

Specific function: Unknown

COG id: COG3473

COG function: function code Q; Maleate cis-trans isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26552; Mature: 26552

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS00136 SUBTILASE_ASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTPFPYEIAEDPRPRLGLIALQVDETIEEDFRVMFPRQAARLHVSRVPSGAELTPETIA
CCCCCCCHHCCCCCCCEEEEEEEHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHC
GMEDDLPAAARLLPPAARFEVIAYGCTSGTGQIGVERVAELIQTGATTKAVSNPLSAAIA
CCCCCCCHHHHHCCCCHHEEEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ALNALGVSRVGIVSPYIDAVAAPIRAAFVDAGLSVPDMLGFGEEVEARVARIAPRSICAA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCHHHHHHH
AHALGERSTLDAVFLSCTNLRTLDVIPLLEQQLGLPVLSSNQVLAWHMAALAGLELDDLE
HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHCCCCCCCC
VPGQLGKKAAQP
CCHHHHHHCCCC
>Mature Secondary Structure
MMTPFPYEIAEDPRPRLGLIALQVDETIEEDFRVMFPRQAARLHVSRVPSGAELTPETIA
CCCCCCCHHCCCCCCCEEEEEEEHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHC
GMEDDLPAAARLLPPAARFEVIAYGCTSGTGQIGVERVAELIQTGATTKAVSNPLSAAIA
CCCCCCCHHHHHCCCCHHEEEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ALNALGVSRVGIVSPYIDAVAAPIRAAFVDAGLSVPDMLGFGEEVEARVARIAPRSICAA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCHHHHHHH
AHALGERSTLDAVFLSCTNLRTLDVIPLLEQQLGLPVLSSNQVLAWHMAALAGLELDDLE
HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHCCCCCCCC
VPGQLGKKAAQP
CCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA