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The map label for this gene is ddpC [H]

Identifier: 99082556

GI number: 99082556

Start: 2861130

End: 2862035

Strand: Direct

Name: ddpC [H]

Synonym: TM1040_2716

Alternate gene names: 99082556

Gene position: 2861130-2862035 (Clockwise)

Preceding gene: 99082555

Following gene: 99082557

Centisome position: 89.38

GC content: 62.47

Gene sequence:

>906_bases
ATGACAACGATGACAAACTGGCTGCTCGACGACTCCCCCAGCTCCCGCCTGCAGGCCTCCTTGGGTCACAGCTACCGTGT
GACACGGATGCTGATGCGCAATCCTCTTGCCGTGGTGGGCGCCGTGATTCTGCTGGTGCTGATCCTGGCGGCCATCTTTG
CGCCGTGGATCGCACCGCATAGTCCGCTGGGCCAAAACCTCGGTCAGCGCCTGCTGCCGCCTTCGGCAGAGCATTGGATG
GGCACCGATGAGCTGGGCCGCGACATTTTTAGCCGCGTCATCTATGGCGCACGCATCACCTTGCTGATCGTGGCACTGGT
GGCAGTAATCTCGGCCCCGCTTGGGCTGCTCATCGGAGCGGTGTCCGGCTATTTCGGCGGCTGGACGGACAAGATCATCA
TGGGCGTGACGGATGTGTTCCTGTCGATGCCCAAGCTGATCCTCGCGCTTGCCTTTGTCGCAGCACTCGGGCCGGGGATT
GAGAACGCGATTATCGCCATCGCCATCACATCCTGGCCCGCCTATGCCCGGATCGCGCGCGCCGAGACACTGACCTTCCG
CAACTCGGAATTCATCTCGGCCATGCGTTTGCTGGGGGCGTCGCACACGCGGATCATCACACGCCATGTGCTGCCGCTGT
GTACCTCGTCGATGATCGTGCGGGTGACGCTGGATATGGCGGGGATCATCCTGACCGCAGCCGGTTTGGGCTTTCTGGGG
CTTGGCGCACAGCCGCCGCTGCCCGAATGGGGTGCGATGATCTCGCGCGGTCGGGCCTTTATCCTCGATCAGTGGTGGGT
CGCCACCATGCCCGGCTTTGCCATCATCATCGTCTCGCTCGGTTTCTGTTTCCTCGGTGACGGCCTGCGCGATGTGCTGG
ACCCCAAACAGGGAGGCAAATCATGA

Upstream 100 bases:

>100_bases
TGGCGCAACCTTAGTGATCGGGTCGGTCTTCATTCTCATCAACAAGCTGTCGGATGTGCTCTACCGCATTCTCGACCCGC
GCAGCCGATAGGAGGGTGCC

Downstream 100 bases:

>100_bases
GCGATATGCCACTTTTGGAACTGGAAAACCTGCGCGTGAGCTTCCCCACGCCGCAAGGGCGCGTCGAGGTGGTCAAAGGC
CTGTCCTTCACCTTGGGCCG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MTTMTNWLLDDSPSSRLQASLGHSYRVTRMLMRNPLAVVGAVILLVLILAAIFAPWIAPHSPLGQNLGQRLLPPSAEHWM
GTDELGRDIFSRVIYGARITLLIVALVAVISAPLGLLIGAVSGYFGGWTDKIIMGVTDVFLSMPKLILALAFVAALGPGI
ENAIIAIAITSWPAYARIARAETLTFRNSEFISAMRLLGASHTRIITRHVLPLCTSSMIVRVTLDMAGIILTAAGLGFLG
LGAQPPLPEWGAMISRGRAFILDQWWVATMPGFAIIIVSLGFCFLGDGLRDVLDPKQGGKS

Sequences:

>Translated_301_residues
MTTMTNWLLDDSPSSRLQASLGHSYRVTRMLMRNPLAVVGAVILLVLILAAIFAPWIAPHSPLGQNLGQRLLPPSAEHWM
GTDELGRDIFSRVIYGARITLLIVALVAVISAPLGLLIGAVSGYFGGWTDKIIMGVTDVFLSMPKLILALAFVAALGPGI
ENAIIAIAITSWPAYARIARAETLTFRNSEFISAMRLLGASHTRIITRHVLPLCTSSMIVRVTLDMAGIILTAAGLGFLG
LGAQPPLPEWGAMISRGRAFILDQWWVATMPGFAIIIVSLGFCFLGDGLRDVLDPKQGGKS
>Mature_300_residues
TTMTNWLLDDSPSSRLQASLGHSYRVTRMLMRNPLAVVGAVILLVLILAAIFAPWIAPHSPLGQNLGQRLLPPSAEHWMG
TDELGRDIFSRVIYGARITLLIVALVAVISAPLGLLIGAVSGYFGGWTDKIIMGVTDVFLSMPKLILALAFVAALGPGIE
NAIIAIAITSWPAYARIARAETLTFRNSEFISAMRLLGASHTRIITRHVLPLCTSSMIVRVTLDMAGIILTAAGLGFLGL
GAQPPLPEWGAMISRGRAFILDQWWVATMPGFAIIIVSLGFCFLGDGLRDVLDPKQGGKS

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=276, Percent_Identity=47.463768115942, Blast_Score=266, Evalue=1e-72,
Organism=Escherichia coli, GI1787054, Length=275, Percent_Identity=46.1818181818182, Blast_Score=235, Evalue=3e-63,
Organism=Escherichia coli, GI1789964, Length=270, Percent_Identity=45.9259259259259, Blast_Score=199, Evalue=1e-52,
Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=41.9753086419753, Blast_Score=187, Evalue=6e-49,
Organism=Escherichia coli, GI1787498, Length=271, Percent_Identity=34.3173431734317, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI1787549, Length=271, Percent_Identity=35.4243542435424, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1788505, Length=225, Percent_Identity=31.1111111111111, Blast_Score=115, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32311; Mature: 32180

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTMTNWLLDDSPSSRLQASLGHSYRVTRMLMRNPLAVVGAVILLVLILAAIFAPWIAPH
CCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
SPLGQNLGQRLLPPSAEHWMGTDELGRDIFSRVIYGARITLLIVALVAVISAPLGLLIGA
CCHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSGYFGGWTDKIIMGVTDVFLSMPKLILALAFVAALGPGIENAIIAIAITSWPAYARIAR
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHH
AETLTFRNSEFISAMRLLGASHTRIITRHVLPLCTSSMIVRVTLDMAGIILTAAGLGFLG
HHHHEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LGAQPPLPEWGAMISRGRAFILDQWWVATMPGFAIIIVSLGFCFLGDGLRDVLDPKQGGK
CCCCCCCCHHHHHHHCCCEEEEECHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCC
S
C
>Mature Secondary Structure 
TTMTNWLLDDSPSSRLQASLGHSYRVTRMLMRNPLAVVGAVILLVLILAAIFAPWIAPH
CCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
SPLGQNLGQRLLPPSAEHWMGTDELGRDIFSRVIYGARITLLIVALVAVISAPLGLLIGA
CCHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSGYFGGWTDKIIMGVTDVFLSMPKLILALAFVAALGPGIENAIIAIAITSWPAYARIAR
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHH
AETLTFRNSEFISAMRLLGASHTRIITRHVLPLCTSSMIVRVTLDMAGIILTAAGLGFLG
HHHHEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LGAQPPLPEWGAMISRGRAFILDQWWVATMPGFAIIIVSLGFCFLGDGLRDVLDPKQGGK
CCCCCCCCHHHHHHHCCCEEEEECHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]