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The map label for this gene is ycjC [C]

Identifier: 99082554

GI number: 99082554

Start: 2859216

End: 2859830

Strand: Reverse

Name: ycjC [C]

Synonym: TM1040_2714

Alternate gene names: 99082554

Gene position: 2859830-2859216 (Counterclockwise)

Preceding gene: 99082562

Following gene: 99082553

Centisome position: 89.34

GC content: 60.16

Gene sequence:

>615_bases
ATGCAGCGTGAGAAGCCATCAACAGAGCCCAATGTCGGTCCCGCGATCCGCAAGCGTCGCAAGCAGCTGAAGCTGACCTT
GCAGGCGCTCTCGGATCGGTCCGGTGTTTCGGTCGGCTATCTGAGTCAGGTGGAGCGCGACAATGCGACCCCCTCGCTTG
GGACATTGGCGCAGATTTCTGCGGCGCTGGATGTGGGGCTGGATTACTTCATCTCGGCCTCCAAACCCTCGGATGGGCTG
ACACGGTCCGGTAGCCGCCCGCTCTTTGCCCTAGATGATTCCTCGCTGCGCTACGAGGCACTGGGCGCGGATTTTCCGGG
GTCCGAGATGTCCGCTTACATCCTGCACATTCCGCCCGGTTATGTGTCTGAAACGGTACATCACGAAGGGGAGGAGATCA
TCTTTATCCTCGAGGGTGAAATCCAGCAGACCCTTGGCGGGCAGACCTTTTCCATGATGCCGGGCGACAGTCTGCATTAC
AGCGGCGACACCCCCCATGCCTGGAGCAATCCGACCGATCAGAACGCCCGAATCCTCTGGACCGGGACTCTGACCGTTCT
CAACCGCAAAGGCGCCATCGAGCTTCCGGAGCTGTCCCACAAGCAGAGCACGTAA

Upstream 100 bases:

>100_bases
ACAAAAATTTTTTTTGTAGCCTGCACGAAGAACATCCAGCCGGGTGACCCGAACTGGTGCCAGTGGCGCAGCGGGTCCGC
CCCTTATGTGAAGAGTGACC

Downstream 100 bases:

>100_bases
GCCGCGACAGCCCAATTGACGTTTTTTCCAACAAGGAGACCTCTTGTGAAACACCTGAAGACAACTCTGCTCGCCAGCGC
CTTGATGCTGCCGCTTGCAG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Cupin 2 Domain-Containing Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Transcriptional Regulator MerR Family; Helix-Turn-Helix Domain-Containing Protein; MerR Family Transcriptional Regulator; Cupin 2 Conserved Barrel Domain Protein; HTH-Type Transcriptional Regulator; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin Domain Protein; Regulatory Protein; Transcriptional Regulator XRE Family Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator Xre Familiy; Transcriptional Regulator Cro/CI Family; Helix-Turn-Helix Protein; Transcriptional Regulator Protein

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MQREKPSTEPNVGPAIRKRRKQLKLTLQALSDRSGVSVGYLSQVERDNATPSLGTLAQISAALDVGLDYFISASKPSDGL
TRSGSRPLFALDDSSLRYEALGADFPGSEMSAYILHIPPGYVSETVHHEGEEIIFILEGEIQQTLGGQTFSMMPGDSLHY
SGDTPHAWSNPTDQNARILWTGTLTVLNRKGAIELPELSHKQST

Sequences:

>Translated_204_residues
MQREKPSTEPNVGPAIRKRRKQLKLTLQALSDRSGVSVGYLSQVERDNATPSLGTLAQISAALDVGLDYFISASKPSDGL
TRSGSRPLFALDDSSLRYEALGADFPGSEMSAYILHIPPGYVSETVHHEGEEIIFILEGEIQQTLGGQTFSMMPGDSLHY
SGDTPHAWSNPTDQNARILWTGTLTVLNRKGAIELPELSHKQST
>Mature_204_residues
MQREKPSTEPNVGPAIRKRRKQLKLTLQALSDRSGVSVGYLSQVERDNATPSLGTLAQISAALDVGLDYFISASKPSDGL
TRSGSRPLFALDDSSLRYEALGADFPGSEMSAYILHIPPGYVSETVHHEGEEIIFILEGEIQQTLGGQTFSMMPGDSLHY
SGDTPHAWSNPTDQNARILWTGTLTVLNRKGAIELPELSHKQST

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787557, Length=177, Percent_Identity=24.8587570621469, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22208; Mature: 22208

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQREKPSTEPNVGPAIRKRRKQLKLTLQALSDRSGVSVGYLSQVERDNATPSLGTLAQIS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHCCCCCCHHHHHHHH
AALDVGLDYFISASKPSDGLTRSGSRPLFALDDSSLRYEALGADFPGSEMSAYILHIPPG
HHHHCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCEEEEEECCCC
YVSETVHHEGEEIIFILEGEIQQTLGGQTFSMMPGDSLHYSGDTPHAWSNPTDQNARILW
HHHHHHHCCCCEEEEEEECCHHHHHCCCEEEECCCCCEEECCCCCCCCCCCCCCCCEEEE
TGTLTVLNRKGAIELPELSHKQST
EEEEEEEECCCCEECCCCCCCCCC
>Mature Secondary Structure
MQREKPSTEPNVGPAIRKRRKQLKLTLQALSDRSGVSVGYLSQVERDNATPSLGTLAQIS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHCCCCCCHHHHHHHH
AALDVGLDYFISASKPSDGLTRSGSRPLFALDDSSLRYEALGADFPGSEMSAYILHIPPG
HHHHCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCEEEEEECCCC
YVSETVHHEGEEIIFILEGEIQQTLGGQTFSMMPGDSLHYSGDTPHAWSNPTDQNARILW
HHHHHHHCCCCEEEEEEECCHHHHHCCCEEEECCCCCEEECCCCCCCCCCCCCCCCEEEE
TGTLTVLNRKGAIELPELSHKQST
EEEEEEEECCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA