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The map label for this gene is phyR [H]

Identifier: 99082562

GI number: 99082562

Start: 2865208

End: 2866029

Strand: Reverse

Name: phyR [H]

Synonym: TM1040_2722

Alternate gene names: 99082562

Gene position: 2866029-2865208 (Counterclockwise)

Preceding gene: 99082565

Following gene: 99082554

Centisome position: 89.54

GC content: 59.0

Gene sequence:

>822_bases
TTGTCGACCTCTACCACAGGCCAGGCTCTGACACTGTCGGACGTGATTACTCCGCATCTGCCTTATCTGCGCCGTTATGC
GCGCGCGCTCACCGGGGCGCAGCAATCCGGTGATGCCTATGCGGCCTCGACTCTCGAAGCGATCCTTGCCGATCCGTCTT
GTTTTGATGCGCAGAGCGCAGGCGGCAAGGTGGCATTGTTCAAAGTGTTTCACACTCTCTGGAGCAGCTCTGGTCAGCCG
GTGCTGGAGGCCGATGAAGGCCCCCGTGCGCGGGCGCTGCAGCATCTGTCCTCGCTGACGGCAAACACCCGAGAGGCACT
CTTGCTCAATACTGTCGAAGCCTTCTCTGTTGGCGAAGTGGCTCTTATCATGGATCTGTCTGAGAGCGAGGCTGCAGGAT
TGATCCAGCTGGCCCGCGACGAGATGCAGCAATCCGTGAGCGGCAAGATCATGATCATCGAAGACGAGGCCATCATCGCC
ATGGACCTCGAAGGCATCTGTTCCATGATGGGCCACGAGGTCACTGGGATTGCGCGCACGCGCAAGGCTGCGGTGAAACT
GGGGCTCGAGGAAAAGCCCGACCTGATCCTTGCCGATATTCAGCTTGCCGACAATTCAAGCGGCATCGATGCGGTGGCGG
ATCTTCTGGAGGAGCTGGGCGACGTTCCGGTGATCTTTATCACCGCCTTCCCGGAGCGTCTGCTGACCGGTGAACGTCAC
GAGCCCGCCTTTATGATCGCAAAGCCTTATGTGCCCGACCAGGTGATCTCTGCGATCAGTCAGGCGATGTTCTTTGCCTC
GACCGATACGCTCACCAGTTAA

Upstream 100 bases:

>100_bases
CAACACCTATGACTCTCGCGCGCAAAAAAATGCATTTCCATGGAACAAACGCGCGGGACATGCGTTTGTTCCGAGAAATA
TTGGTGACAGGAGAAAAAAA

Downstream 100 bases:

>100_bases
GGGAAAGCGCGCAACAAGCCCCGGACAAGGATTGGTCCGGGGCTTTTTCTATGGAACTGACCGCCATATGCGGCGCTTTC
AGAATCCACATTTCAAAATA

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MSTSTTGQALTLSDVITPHLPYLRRYARALTGAQQSGDAYAASTLEAILADPSCFDAQSAGGKVALFKVFHTLWSSSGQP
VLEADEGPRARALQHLSSLTANTREALLLNTVEAFSVGEVALIMDLSESEAAGLIQLARDEMQQSVSGKIMIIEDEAIIA
MDLEGICSMMGHEVTGIARTRKAAVKLGLEEKPDLILADIQLADNSSGIDAVADLLEELGDVPVIFITAFPERLLTGERH
EPAFMIAKPYVPDQVISAISQAMFFASTDTLTS

Sequences:

>Translated_273_residues
MSTSTTGQALTLSDVITPHLPYLRRYARALTGAQQSGDAYAASTLEAILADPSCFDAQSAGGKVALFKVFHTLWSSSGQP
VLEADEGPRARALQHLSSLTANTREALLLNTVEAFSVGEVALIMDLSESEAAGLIQLARDEMQQSVSGKIMIIEDEAIIA
MDLEGICSMMGHEVTGIARTRKAAVKLGLEEKPDLILADIQLADNSSGIDAVADLLEELGDVPVIFITAFPERLLTGERH
EPAFMIAKPYVPDQVISAISQAMFFASTDTLTS
>Mature_272_residues
STSTTGQALTLSDVITPHLPYLRRYARALTGAQQSGDAYAASTLEAILADPSCFDAQSAGGKVALFKVFHTLWSSSGQPV
LEADEGPRARALQHLSSLTANTREALLLNTVEAFSVGEVALIMDLSESEAAGLIQLARDEMQQSVSGKIMIIEDEAIIAM
DLEGICSMMGHEVTGIARTRKAAVKLGLEEKPDLILADIQLADNSSGIDAVADLLEELGDVPVIFITAFPERLLTGERHE
PAFMIAKPYVPDQVISAISQAMFFASTDTLTS

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 29124; Mature: 28993

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSTTGQALTLSDVITPHLPYLRRYARALTGAQQSGDAYAASTLEAILADPSCFDAQSA
CCCCCCCCEEEHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
GGKVALFKVFHTLWSSSGQPVLEADEGPRARALQHLSSLTANTREALLLNTVEAFSVGEV
CCCCHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCE
ALIMDLSESEAAGLIQLARDEMQQSVSGKIMIIEDEAIIAMDLEGICSMMGHEVTGIART
EEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECHHHHHHHHCCCHHHHHHH
RKAAVKLGLEEKPDLILADIQLADNSSGIDAVADLLEELGDVPVIFITAFPERLLTGERH
HHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCC
EPAFMIAKPYVPDQVISAISQAMFFASTDTLTS
CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
STSTTGQALTLSDVITPHLPYLRRYARALTGAQQSGDAYAASTLEAILADPSCFDAQSA
CCCCCCCEEEHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
GGKVALFKVFHTLWSSSGQPVLEADEGPRARALQHLSSLTANTREALLLNTVEAFSVGEV
CCCCHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCE
ALIMDLSESEAAGLIQLARDEMQQSVSGKIMIIEDEAIIAMDLEGICSMMGHEVTGIART
EEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECHHHHHHHHCCCHHHHHHH
RKAAVKLGLEEKPDLILADIQLADNSSGIDAVADLLEELGDVPVIFITAFPERLLTGERH
HHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCC
EPAFMIAKPYVPDQVISAISQAMFFASTDTLTS
CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA