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The map label for this gene is ddpA [H]

Identifier: 99082553

GI number: 99082553

Start: 2857581

End: 2859170

Strand: Reverse

Name: ddpA [H]

Synonym: TM1040_2713

Alternate gene names: 99082553

Gene position: 2859170-2857581 (Counterclockwise)

Preceding gene: 99082554

Following gene: 99082552

Centisome position: 89.32

GC content: 60.06

Gene sequence:

>1590_bases
GTGAAACACCTGAAGACAACTCTGCTCGCCAGCGCCTTGATGCTGCCGCTTGCAGCCCCTGCCGTACTGGCTGATACGCC
CGAAGGCGTGCTCGTGGTTGCACAGAACATCGACGATGTCGTCGCCATCGACCCGGCGCAGGCCTATGAGTTCACCTCCG
GCGAGCTCGTGACCAACCTCTATGACCGTCTGGTGCAATACGATGCCGAAGACACCACCGTTCTGGCCGCAGGTCTGGCC
TCGGAATGGGTCACCGATGCGGATGCCAAGACCATCACTTTCACCCTGCGCGATGGGGCGACCTTTGCCTCTGGCAATCC
CGTGACCGCAGAAGATGTGGTCTATTCCTTCTCCCGCGTGGTGAAGCTGAACCTGACCCCGGCGTTCATCCTGACTCAAC
TGGGCTGGACGGCAGATAACATCGGCGAAATGGTCACGGGCGAGGGCAACACCGTCACCGTGAAATACGCCGGCGACTTC
TCTCCGGCGTTTGTACTGAACGTCCTGGCGGCACGTCCTGCCTCCATCGTCGACAGCAAGCTGGTGCAGGAAAACGAAGT
TGACGGCGACATGGGCAATGCCTGGCTCAACGCCAATGCCGCCGGTTCTGGCCCCTTCACGCTGCAACGCTATGCGGCGG
GTCAGATGGTGCGCATGCAGGCCAATCCGACCTATTTCAACGGCGCGCCCAAGATCGACAGCGTGATCATCCGCCATGTG
GCCGAAAGCGCGACCCAGCAGCTTTTGCTGGAGCAGGGCGACGTGGATCTGGCCCGCAACATGACACCCGATCAGGTGGC
TTCCCTTGAAAGCGGCGAGATCAAGGTCGAGACATACCCGCAGGCGGCTGTGCATTTCCTGTCGTTCAACCAGAAGACCG
AGAGCCTTACGCCCCCCGCCGTTTGGGAAGCCGCGCGCTATCTGGTGGACTACAAGGGCATGACCGAGACCATCATCAAA
GGTCAGATGGAAGTCCACCAGGCGTTCTGGCCCAAGGGCTTCCCCGGTTCCTATGACGAAACGCCGTTCTCTTATAACCC
GGAAAAAGCCAAGAGCATTCTGTCCGAGGCCGGGATCGAGACCCCGATCACCGTGTCGCTCGACGTGATCAACGCCGCGC
CCTTTACCGACATGGCGCAATCGTTGCAGGCGAGCTTTGCCGATGCGGGCATCAACTTTGAGATCCTGCCCGGCACCGGC
AGCCAGGTCATCACCAAGTACCGCGAGCGCAGCCATGAGGCGATGCTGCTGTACTGGGGCCCGGACTTCATGGATCCGCA
CTCCAACGCCAAGGCCTTCGCCTATAACTCCAACAACGCAGACGACTCCTATGCCGCCACAACCACATGGCGCAATGCAT
GGGCCGTGCCGGATGCGCTCAACGAGAAAACCATGGCGGCTCTGACCGAGAGCGACGCCGAGGCCCGTCTCAACATGTAT
CGCGAGCTGCAAAAAGAAGTGCAGGCCGAGTCGCCCATCGTGATCATGTTCCAGGCCGCCTATCAGGTTGCCATGAACGA
GGCCGTTTCTGGCTATGTGAACGGCGCCACCTCGGATTTTGTCTTCTACCGTCTGGTTGAAAAACAGTAA

Upstream 100 bases:

>100_bases
CAACCGCAAAGGCGCCATCGAGCTTCCGGAGCTGTCCCACAAGCAGAGCACGTAAGCCGCGACAGCCCAATTGACGTTTT
TTCCAACAAGGAGACCTCTT

Downstream 100 bases:

>100_bases
TCTCCCCGACTGTGGGTCGCTGCATCCGTGGCGGCCCGCTTTTTCTCTCTTCCTCTCCCCACTCTTTTCCGGAGGCCTCG
ATGACCGAATTTCCGCTGAC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MKHLKTTLLASALMLPLAAPAVLADTPEGVLVVAQNIDDVVAIDPAQAYEFTSGELVTNLYDRLVQYDAEDTTVLAAGLA
SEWVTDADAKTITFTLRDGATFASGNPVTAEDVVYSFSRVVKLNLTPAFILTQLGWTADNIGEMVTGEGNTVTVKYAGDF
SPAFVLNVLAARPASIVDSKLVQENEVDGDMGNAWLNANAAGSGPFTLQRYAAGQMVRMQANPTYFNGAPKIDSVIIRHV
AESATQQLLLEQGDVDLARNMTPDQVASLESGEIKVETYPQAAVHFLSFNQKTESLTPPAVWEAARYLVDYKGMTETIIK
GQMEVHQAFWPKGFPGSYDETPFSYNPEKAKSILSEAGIETPITVSLDVINAAPFTDMAQSLQASFADAGINFEILPGTG
SQVITKYRERSHEAMLLYWGPDFMDPHSNAKAFAYNSNNADDSYAATTTWRNAWAVPDALNEKTMAALTESDAEARLNMY
RELQKEVQAESPIVIMFQAAYQVAMNEAVSGYVNGATSDFVFYRLVEKQ

Sequences:

>Translated_529_residues
MKHLKTTLLASALMLPLAAPAVLADTPEGVLVVAQNIDDVVAIDPAQAYEFTSGELVTNLYDRLVQYDAEDTTVLAAGLA
SEWVTDADAKTITFTLRDGATFASGNPVTAEDVVYSFSRVVKLNLTPAFILTQLGWTADNIGEMVTGEGNTVTVKYAGDF
SPAFVLNVLAARPASIVDSKLVQENEVDGDMGNAWLNANAAGSGPFTLQRYAAGQMVRMQANPTYFNGAPKIDSVIIRHV
AESATQQLLLEQGDVDLARNMTPDQVASLESGEIKVETYPQAAVHFLSFNQKTESLTPPAVWEAARYLVDYKGMTETIIK
GQMEVHQAFWPKGFPGSYDETPFSYNPEKAKSILSEAGIETPITVSLDVINAAPFTDMAQSLQASFADAGINFEILPGTG
SQVITKYRERSHEAMLLYWGPDFMDPHSNAKAFAYNSNNADDSYAATTTWRNAWAVPDALNEKTMAALTESDAEARLNMY
RELQKEVQAESPIVIMFQAAYQVAMNEAVSGYVNGATSDFVFYRLVEKQ
>Mature_529_residues
MKHLKTTLLASALMLPLAAPAVLADTPEGVLVVAQNIDDVVAIDPAQAYEFTSGELVTNLYDRLVQYDAEDTTVLAAGLA
SEWVTDADAKTITFTLRDGATFASGNPVTAEDVVYSFSRVVKLNLTPAFILTQLGWTADNIGEMVTGEGNTVTVKYAGDF
SPAFVLNVLAARPASIVDSKLVQENEVDGDMGNAWLNANAAGSGPFTLQRYAAGQMVRMQANPTYFNGAPKIDSVIIRHV
AESATQQLLLEQGDVDLARNMTPDQVASLESGEIKVETYPQAAVHFLSFNQKTESLTPPAVWEAARYLVDYKGMTETIIK
GQMEVHQAFWPKGFPGSYDETPFSYNPEKAKSILSEAGIETPITVSLDVINAAPFTDMAQSLQASFADAGINFEILPGTG
SQVITKYRERSHEAMLLYWGPDFMDPHSNAKAFAYNSNNADDSYAATTTWRNAWAVPDALNEKTMAALTESDAEARLNMY
RELQKEVQAESPIVIMFQAAYQVAMNEAVSGYVNGATSDFVFYRLVEKQ

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=533, Percent_Identity=28.3302063789869, Blast_Score=180, Evalue=2e-46,
Organism=Escherichia coli, GI1789966, Length=488, Percent_Identity=24.3852459016393, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1787551, Length=503, Percent_Identity=25.2485089463221, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787495, Length=559, Percent_Identity=22.7191413237925, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1789887, Length=413, Percent_Identity=23.0024213075061, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787052, Length=390, Percent_Identity=25.1282051282051, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081878, Length=402, Percent_Identity=24.1293532338308, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1789397, Length=539, Percent_Identity=21.7068645640074, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57557; Mature: 57557

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHLKTTLLASALMLPLAAPAVLADTPEGVLVVAQNIDDVVAIDPAQAYEFTSGELVTNL
CCHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEEECCCCEEEECCHHHCCCCCCHHHHHH
YDRLVQYDAEDTTVLAAGLASEWVTDADAKTITFTLRDGATFASGNPVTAEDVVYSFSRV
HHHHHHCCCCCCEEEEHHHHHHHCCCCCCEEEEEEEECCCEECCCCCCCHHHHHHHHHHE
VKLNLTPAFILTQLGWTADNIGEMVTGEGNTVTVKYAGDFSPAFVLNVLAARPASIVDSK
EEECCCHHHHHHHCCCCHHHCCCEEECCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHH
LVQENEVDGDMGNAWLNANAAGSGPFTLQRYAAGQMVRMQANPTYFNGAPKIDSVIIRHV
HHHHCCCCCCCCCEEEECCCCCCCCCEEEECCCCCEEEEECCCCEECCCCCHHHHHHHHH
AESATQQLLLEQGDVDLARNMTPDQVASLESGEIKVETYPQAAVHFLSFNQKTESLTPPA
HHHHHHHHHHHCCCCHHHHCCCHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCHH
VWEAARYLVDYKGMTETIIKGQMEVHQAFWPKGFPGSYDETPFSYNPEKAKSILSEAGIE
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
TPITVSLDVINAAPFTDMAQSLQASFADAGINFEILPGTGSQVITKYRERSHEAMLLYWG
CCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEEEEEC
PDFMDPHSNAKAFAYNSNNADDSYAATTTWRNAWAVPDALNEKTMAALTESDAEARLNMY
CCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCHHHHHHHHH
RELQKEVQAESPIVIMFQAAYQVAMNEAVSGYVNGATSDFVFYRLVEKQ
HHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MKHLKTTLLASALMLPLAAPAVLADTPEGVLVVAQNIDDVVAIDPAQAYEFTSGELVTNL
CCHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEEECCCCEEEECCHHHCCCCCCHHHHHH
YDRLVQYDAEDTTVLAAGLASEWVTDADAKTITFTLRDGATFASGNPVTAEDVVYSFSRV
HHHHHHCCCCCCEEEEHHHHHHHCCCCCCEEEEEEEECCCEECCCCCCCHHHHHHHHHHE
VKLNLTPAFILTQLGWTADNIGEMVTGEGNTVTVKYAGDFSPAFVLNVLAARPASIVDSK
EEECCCHHHHHHHCCCCHHHCCCEEECCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHH
LVQENEVDGDMGNAWLNANAAGSGPFTLQRYAAGQMVRMQANPTYFNGAPKIDSVIIRHV
HHHHCCCCCCCCCEEEECCCCCCCCCEEEECCCCCEEEEECCCCEECCCCCHHHHHHHHH
AESATQQLLLEQGDVDLARNMTPDQVASLESGEIKVETYPQAAVHFLSFNQKTESLTPPA
HHHHHHHHHHHCCCCHHHHCCCHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCHH
VWEAARYLVDYKGMTETIIKGQMEVHQAFWPKGFPGSYDETPFSYNPEKAKSILSEAGIE
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
TPITVSLDVINAAPFTDMAQSLQASFADAGINFEILPGTGSQVITKYRERSHEAMLLYWG
CCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEEEEEC
PDFMDPHSNAKAFAYNSNNADDSYAATTTWRNAWAVPDALNEKTMAALTESDAEARLNMY
CCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCHHHHHHHHH
RELQKEVQAESPIVIMFQAAYQVAMNEAVSGYVNGATSDFVFYRLVEKQ
HHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]