Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082472

Identifier: 99082472

GI number: 99082472

Start: 2766222

End: 2766989

Strand: Direct

Name: 99082472

Synonym: TM1040_2632

Alternate gene names: NA

Gene position: 2766222-2766989 (Clockwise)

Preceding gene: 99082470

Following gene: 99082473

Centisome position: 86.42

GC content: 60.42

Gene sequence:

>768_bases
ATGGCAAAACCGTTGATGGCCAAGGCGACCGCCGTGTGGCTGGTGGACAATACCACGATCAGCTTCAAGCAGATCGCTGA
TTTCGTTGGCATGCACGAGCTGGAAATTCAGGGCATCGCGGATGGCGATGTGGCCGCTGGCGTAAAGGGCTTTGACCCGA
TTGCAAACAACCAGCTGACCCAGGAAGAAATCACCACGGCGGAAAACAACCCGCTGCACAAGCTGAAGCTCAAGTTTAAC
GCCGCCGCCGCAGGCGAGGAAAAGCGCCGTGGCCCGCGCTACACCCCGCTGTCCAAGCGTCAGGATCGCCCGAACTCGAT
TCTCTGGCTGGTGAAATTCCACCCCGAGCTGGCCGATGCCCAAATCGCCAAGCTGGTGGGCACTACCAAACCGACCATTC
AGTCGATCCGCGAGCGCACCCACTGGAACATCGCCAACATGGAGCCGATCGACCCGGTGGCGCTTGGCCTGTGTAAACAG
TCCGAACTGGATGCAGCCGTGCAAAAGGCCGCCAAGAAGCGTGCCGCCGAAGGCGGCGTGATGAACGACGACGAGCGCCG
CAAACTGGTCTCCACCGAGCAGTCGCTCGAGATGGACGCCGAGCCCAAGATCCCCTCCGCGATCGAAGGGCTGGAAACCT
TCACGCTTGGCTCCTCTGACGAGGACGACAAGAAAGAAGACGAAATCGTCGACGCCGACAGCTTCTTCAACCTGCCCGCC
AGCAGCGATGAGGACGAAGACGACGACAGCGACGATCCGCGCTACTGA

Upstream 100 bases:

>100_bases
CGAAGCTCCGGGGAAGCCGATCTAAGGCGACGGGAGAGGTTTACCCGCAGGTTGTCCGGCTCAGGGTTGGGGACGGACGT
GTTTCGAAGGAGTAAAGCAC

Downstream 100 bases:

>100_bases
GTGCGTGGCTGACAGGCCCACGCGCCTGCCGACGTCTGACAAAAACACCGCAGTCGCCCCGTGCGCTGCGGTGTTTTTTT
TGCCTCTTGCCAATATCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MAKPLMAKATAVWLVDNTTISFKQIADFVGMHELEIQGIADGDVAAGVKGFDPIANNQLTQEEITTAENNPLHKLKLKFN
AAAAGEEKRRGPRYTPLSKRQDRPNSILWLVKFHPELADAQIAKLVGTTKPTIQSIRERTHWNIANMEPIDPVALGLCKQ
SELDAAVQKAAKKRAAEGGVMNDDERRKLVSTEQSLEMDAEPKIPSAIEGLETFTLGSSDEDDKKEDEIVDADSFFNLPA
SSDEDEDDDSDDPRY

Sequences:

>Translated_255_residues
MAKPLMAKATAVWLVDNTTISFKQIADFVGMHELEIQGIADGDVAAGVKGFDPIANNQLTQEEITTAENNPLHKLKLKFN
AAAAGEEKRRGPRYTPLSKRQDRPNSILWLVKFHPELADAQIAKLVGTTKPTIQSIRERTHWNIANMEPIDPVALGLCKQ
SELDAAVQKAAKKRAAEGGVMNDDERRKLVSTEQSLEMDAEPKIPSAIEGLETFTLGSSDEDDKKEDEIVDADSFFNLPA
SSDEDEDDDSDDPRY
>Mature_254_residues
AKPLMAKATAVWLVDNTTISFKQIADFVGMHELEIQGIADGDVAAGVKGFDPIANNQLTQEEITTAENNPLHKLKLKFNA
AAAGEEKRRGPRYTPLSKRQDRPNSILWLVKFHPELADAQIAKLVGTTKPTIQSIRERTHWNIANMEPIDPVALGLCKQS
ELDAAVQKAAKKRAAEGGVMNDDERRKLVSTEQSLEMDAEPKIPSAIEGLETFTLGSSDEDDKKEDEIVDADSFFNLPAS
SDEDEDDDSDDPRY

Specific function: Unknown

COG id: COG3820

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28132; Mature: 28000

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPLMAKATAVWLVDNTTISFKQIADFVGMHELEIQGIADGDVAAGVKGFDPIANNQLT
CCCCCCCCEEEEEEEECCEECHHHHHHHHCCEEEEEEECCCCHHHCCCCCCCCCCCCCCC
QEEITTAENNPLHKLKLKFNAAAAGEEKRRGPRYTPLSKRQDRPNSILWLVKFHPELADA
HHHHHHCCCCCCEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHH
QIAKLVGTTKPTIQSIRERTHWNIANMEPIDPVALGLCKQSELDAAVQKAAKKRAAEGGV
HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
MNDDERRKLVSTEQSLEMDAEPKIPSAIEGLETFTLGSSDEDDKKEDEIVDADSFFNLPA
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEEECCCCCCCCCCHHHEECCHHHCCCCC
SSDEDEDDDSDDPRY
CCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKPLMAKATAVWLVDNTTISFKQIADFVGMHELEIQGIADGDVAAGVKGFDPIANNQLT
CCCCCCCEEEEEEEECCEECHHHHHHHHCCEEEEEEECCCCHHHCCCCCCCCCCCCCCC
QEEITTAENNPLHKLKLKFNAAAAGEEKRRGPRYTPLSKRQDRPNSILWLVKFHPELADA
HHHHHHCCCCCCEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHH
QIAKLVGTTKPTIQSIRERTHWNIANMEPIDPVALGLCKQSELDAAVQKAAKKRAAEGGV
HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
MNDDERRKLVSTEQSLEMDAEPKIPSAIEGLETFTLGSSDEDDKKEDEIVDADSFFNLPA
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEEECCCCCCCCCCHHHEECCHHHCCCCC
SSDEDEDDDSDDPRY
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA