| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082472
Identifier: 99082472
GI number: 99082472
Start: 2766222
End: 2766989
Strand: Direct
Name: 99082472
Synonym: TM1040_2632
Alternate gene names: NA
Gene position: 2766222-2766989 (Clockwise)
Preceding gene: 99082470
Following gene: 99082473
Centisome position: 86.42
GC content: 60.42
Gene sequence:
>768_bases ATGGCAAAACCGTTGATGGCCAAGGCGACCGCCGTGTGGCTGGTGGACAATACCACGATCAGCTTCAAGCAGATCGCTGA TTTCGTTGGCATGCACGAGCTGGAAATTCAGGGCATCGCGGATGGCGATGTGGCCGCTGGCGTAAAGGGCTTTGACCCGA TTGCAAACAACCAGCTGACCCAGGAAGAAATCACCACGGCGGAAAACAACCCGCTGCACAAGCTGAAGCTCAAGTTTAAC GCCGCCGCCGCAGGCGAGGAAAAGCGCCGTGGCCCGCGCTACACCCCGCTGTCCAAGCGTCAGGATCGCCCGAACTCGAT TCTCTGGCTGGTGAAATTCCACCCCGAGCTGGCCGATGCCCAAATCGCCAAGCTGGTGGGCACTACCAAACCGACCATTC AGTCGATCCGCGAGCGCACCCACTGGAACATCGCCAACATGGAGCCGATCGACCCGGTGGCGCTTGGCCTGTGTAAACAG TCCGAACTGGATGCAGCCGTGCAAAAGGCCGCCAAGAAGCGTGCCGCCGAAGGCGGCGTGATGAACGACGACGAGCGCCG CAAACTGGTCTCCACCGAGCAGTCGCTCGAGATGGACGCCGAGCCCAAGATCCCCTCCGCGATCGAAGGGCTGGAAACCT TCACGCTTGGCTCCTCTGACGAGGACGACAAGAAAGAAGACGAAATCGTCGACGCCGACAGCTTCTTCAACCTGCCCGCC AGCAGCGATGAGGACGAAGACGACGACAGCGACGATCCGCGCTACTGA
Upstream 100 bases:
>100_bases CGAAGCTCCGGGGAAGCCGATCTAAGGCGACGGGAGAGGTTTACCCGCAGGTTGTCCGGCTCAGGGTTGGGGACGGACGT GTTTCGAAGGAGTAAAGCAC
Downstream 100 bases:
>100_bases GTGCGTGGCTGACAGGCCCACGCGCCTGCCGACGTCTGACAAAAACACCGCAGTCGCCCCGTGCGCTGCGGTGTTTTTTT TGCCTCTTGCCAATATCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MAKPLMAKATAVWLVDNTTISFKQIADFVGMHELEIQGIADGDVAAGVKGFDPIANNQLTQEEITTAENNPLHKLKLKFN AAAAGEEKRRGPRYTPLSKRQDRPNSILWLVKFHPELADAQIAKLVGTTKPTIQSIRERTHWNIANMEPIDPVALGLCKQ SELDAAVQKAAKKRAAEGGVMNDDERRKLVSTEQSLEMDAEPKIPSAIEGLETFTLGSSDEDDKKEDEIVDADSFFNLPA SSDEDEDDDSDDPRY
Sequences:
>Translated_255_residues MAKPLMAKATAVWLVDNTTISFKQIADFVGMHELEIQGIADGDVAAGVKGFDPIANNQLTQEEITTAENNPLHKLKLKFN AAAAGEEKRRGPRYTPLSKRQDRPNSILWLVKFHPELADAQIAKLVGTTKPTIQSIRERTHWNIANMEPIDPVALGLCKQ SELDAAVQKAAKKRAAEGGVMNDDERRKLVSTEQSLEMDAEPKIPSAIEGLETFTLGSSDEDDKKEDEIVDADSFFNLPA SSDEDEDDDSDDPRY >Mature_254_residues AKPLMAKATAVWLVDNTTISFKQIADFVGMHELEIQGIADGDVAAGVKGFDPIANNQLTQEEITTAENNPLHKLKLKFNA AAAGEEKRRGPRYTPLSKRQDRPNSILWLVKFHPELADAQIAKLVGTTKPTIQSIRERTHWNIANMEPIDPVALGLCKQS ELDAAVQKAAKKRAAEGGVMNDDERRKLVSTEQSLEMDAEPKIPSAIEGLETFTLGSSDEDDKKEDEIVDADSFFNLPAS SDEDEDDDSDDPRY
Specific function: Unknown
COG id: COG3820
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28132; Mature: 28000
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKPLMAKATAVWLVDNTTISFKQIADFVGMHELEIQGIADGDVAAGVKGFDPIANNQLT CCCCCCCCEEEEEEEECCEECHHHHHHHHCCEEEEEEECCCCHHHCCCCCCCCCCCCCCC QEEITTAENNPLHKLKLKFNAAAAGEEKRRGPRYTPLSKRQDRPNSILWLVKFHPELADA HHHHHHCCCCCCEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHH QIAKLVGTTKPTIQSIRERTHWNIANMEPIDPVALGLCKQSELDAAVQKAAKKRAAEGGV HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCC MNDDERRKLVSTEQSLEMDAEPKIPSAIEGLETFTLGSSDEDDKKEDEIVDADSFFNLPA CCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEEECCCCCCCCCCHHHEECCHHHCCCCC SSDEDEDDDSDDPRY CCCCCCCCCCCCCCC >Mature Secondary Structure AKPLMAKATAVWLVDNTTISFKQIADFVGMHELEIQGIADGDVAAGVKGFDPIANNQLT CCCCCCCEEEEEEEECCEECHHHHHHHHCCEEEEEEECCCCHHHCCCCCCCCCCCCCCC QEEITTAENNPLHKLKLKFNAAAAGEEKRRGPRYTPLSKRQDRPNSILWLVKFHPELADA HHHHHHCCCCCCEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHH QIAKLVGTTKPTIQSIRERTHWNIANMEPIDPVALGLCKQSELDAAVQKAAKKRAAEGGV HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCC MNDDERRKLVSTEQSLEMDAEPKIPSAIEGLETFTLGSSDEDDKKEDEIVDADSFFNLPA CCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEEECCCCCCCCCCHHHEECCHHHCCCCC SSDEDEDDDSDDPRY CCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA