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The map label for this gene is recO

Identifier: 99082396

GI number: 99082396

Start: 2700556

End: 2701281

Strand: Reverse

Name: recO

Synonym: TM1040_2556

Alternate gene names: 99082396

Gene position: 2701281-2700556 (Counterclockwise)

Preceding gene: 99082397

Following gene: 99082395

Centisome position: 84.39

GC content: 63.77

Gene sequence:

>726_bases
ATGGACTGGCGCGATCAAGGCATATTGCTCACGGTGCGCCGCCATGGCGAATCCTCGGCGTTGATCGAAGTCTTCACTGA
AGATCATGGGTTGCATGCGGGTCTCGTGCGTGGAGGCGCCAGCCGCAAGATGGCGCCGCATCTGCAACCCGGCGCGCAGC
TGGACCTCACATGGTCAGCGCGTCTCGAAGACCACTTGGGCACCTACAAGGCCGAACCGTTGCGCAGCCGCGCGGGCATG
GCGCTGTCGGGACGTCTTGCGCTTGCAGGCCTCAATGCGGTTTGTGCGCTGTTGGCCTTTGCCCTGCCGGATCGCGCACC
TTATCCCGCGCTCTATCATCGCAGCTCCGCGCTTCTGGACCTTCTGGACAGCGAAGACCTCTGGCCTTTGGCCTATCTGA
GATGGGAACTCTCGCTGCTCGAAGATCTGGGCTACGGGCTCGATCTTTCCGCCTGCGCCGCTACGGGCGTGACACAGGAT
CTGAGATATGTCTCGCCCAAAACCGGGCGCGCGGTCTCCGGCGCGGCAGCTGGCGAATGGGCCGACCGGCTGCTGCCCTT
GCCCCCCGTGATGCGGGGCGAGGGGGCAGCCGAAGACATCGAGATCCTGACCGCACTCAGAACCACGGGATTTTTCCTTG
AATCAAAGCTTGCGCCTGCTTTGGGAAATCGTCCCATCCCGGAGGCGCGCGGCCGGTTTCTGGATGCGCTGGCCCGTCGC
GTTTAG

Upstream 100 bases:

>100_bases
CATTGCCAAGCAACGCCAATTCGACAGCGATCTCTGGGTGATCGAGGTGGAGGACCGCCAGGGGCGGCACCTGTTGGACG
AGCCGGGGCTGGATTAGAGA

Downstream 100 bases:

>100_bases
CGATATGCACTCCAACGTCCCGCGCAATCAGACCATTCTTCACCCGCGTCATAAGCATGATACATCGGACCTTGAGAACG
CTCTTGAAGCGCGGCCAGTT

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MDWRDQGILLTVRRHGESSALIEVFTEDHGLHAGLVRGGASRKMAPHLQPGAQLDLTWSARLEDHLGTYKAEPLRSRAGM
ALSGRLALAGLNAVCALLAFALPDRAPYPALYHRSSALLDLLDSEDLWPLAYLRWELSLLEDLGYGLDLSACAATGVTQD
LRYVSPKTGRAVSGAAAGEWADRLLPLPPVMRGEGAAEDIEILTALRTTGFFLESKLAPALGNRPIPEARGRFLDALARR
V

Sequences:

>Translated_241_residues
MDWRDQGILLTVRRHGESSALIEVFTEDHGLHAGLVRGGASRKMAPHLQPGAQLDLTWSARLEDHLGTYKAEPLRSRAGM
ALSGRLALAGLNAVCALLAFALPDRAPYPALYHRSSALLDLLDSEDLWPLAYLRWELSLLEDLGYGLDLSACAATGVTQD
LRYVSPKTGRAVSGAAAGEWADRLLPLPPVMRGEGAAEDIEILTALRTTGFFLESKLAPALGNRPIPEARGRFLDALARR
V
>Mature_241_residues
MDWRDQGILLTVRRHGESSALIEVFTEDHGLHAGLVRGGASRKMAPHLQPGAQLDLTWSARLEDHLGTYKAEPLRSRAGM
ALSGRLALAGLNAVCALLAFALPDRAPYPALYHRSSALLDLLDSEDLWPLAYLRWELSLLEDLGYGLDLSACAATGVTQD
LRYVSPKTGRAVSGAAAGEWADRLLPLPPVMRGEGAAEDIEILTALRTTGFFLESKLAPALGNRPIPEARGRFLDALARR
V

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_SILST (Q1GDH8)

Other databases:

- EMBL:   CP000377
- RefSeq:   YP_614550.1
- ProteinModelPortal:   Q1GDH8
- STRING:   Q1GDH8
- GeneID:   4076687
- GenomeReviews:   CP000377_GR
- KEGG:   sit:TM1040_2556
- NMPDR:   fig|292414.1.peg.728
- eggNOG:   COG1381
- HOGENOM:   HBG474229
- OMA:   PERDPHP
- ProtClustDB:   PRK00085
- BioCyc:   SSP292414:TM1040_2556-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 26098; Mature: 26098

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWRDQGILLTVRRHGESSALIEVFTEDHGLHAGLVRGGASRKMAPHLQPGAQLDLTWSA
CCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEHHHCCCCCCCCCCCCCCCCEEEEEEHH
RLEDHLGTYKAEPLRSRAGMALSGRLALAGLNAVCALLAFALPDRAPYPALYHRSSALLD
HHHHHHCCCCCCHHHHHCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
LLDSEDLWPLAYLRWELSLLEDLGYGLDLSACAATGVTQDLRYVSPKTGRAVSGAAAGEW
HHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCCCHHHH
ADRLLPLPPVMRGEGAAEDIEILTALRTTGFFLESKLAPALGNRPIPEARGRFLDALARR
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHC
V
C
>Mature Secondary Structure
MDWRDQGILLTVRRHGESSALIEVFTEDHGLHAGLVRGGASRKMAPHLQPGAQLDLTWSA
CCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEHHHCCCCCCCCCCCCCCCCEEEEEEHH
RLEDHLGTYKAEPLRSRAGMALSGRLALAGLNAVCALLAFALPDRAPYPALYHRSSALLD
HHHHHHCCCCCCHHHHHCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
LLDSEDLWPLAYLRWELSLLEDLGYGLDLSACAATGVTQDLRYVSPKTGRAVSGAAAGEW
HHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCCCHHHH
ADRLLPLPPVMRGEGAAEDIEILTALRTTGFFLESKLAPALGNRPIPEARGRFLDALARR
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHC
V
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA