| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082395
Identifier: 99082395
GI number: 99082395
Start: 2698525
End: 2700408
Strand: Reverse
Name: 99082395
Synonym: TM1040_2555
Alternate gene names: NA
Gene position: 2700408-2698525 (Counterclockwise)
Preceding gene: 99082396
Following gene: 99082393
Centisome position: 84.36
GC content: 58.92
Gene sequence:
>1884_bases ATGGTTGAGAAGAGCCTGATTGACCTTTCGTGGGACGATTTTGACGAGCATCGCAGCCCGCGTCCCGACCAGAATCAGTT TGATGCCGTGGTAGAGCGCGCCGTCTCCCGCCGGGGTTTTCTCGGGGGTGCATTGGCCTTTGGATCTGGGGCTGCTGTTT TTGGCACGGGCCTGATATCGTCCACGACTGCATCGCGGGCACACGCGCACGCAAAATTTGCCTTCACGCCCATCGGCATT GCCACGGATCATGCGGTTCATGTTCCCGAAGGATACAAATCACAGGTTCTTGTGCGCTGGGGGGATGCGCTCTGGTCTGA CGCTGAGGGCGCCTATTCCGCCGATACGGGCATTTCGCTTGCGATGTCCGACAAGGTCTTTGGTGAAAACACCGATGGGA TGGAGCTTTTTGAGGTAGACGGTCGCGAGATTCTCGTCGTGAACTCAGAATATGTGAACCCCAAGATCAACCTGCCCGCG TCCTCTGAAGGGGTGCCGCAGGATGCAGATGAGGTGCAACTTCTGAAGAATTTGCAGGGCGTCACGGTGATGGAAATCGC GCGCGGCGCGACAGGGTATCAAGTCGTCAAAGACAGCCCCTACAATCGCCGTATCACGCATGAGACCGAGATGACCCTTG CCGGTCCGCTCGCCGGGGATGAACTGGTCAAGACCGATGCCGATCCTTCGGGGCGCCGGGTCAAAGGTACGATGAACAAC TGCGGTTCCGGCAAAACGCTCTGGGGCACCTATCTGACGTGTGAAGAGAACTTCAACGGCTACTTTGGCGCCACCGGCGA GATGCCGGAGGGCGAGGGCTACATTCGCTATGGCATCGGTGGTGAAGGCCGTTACGCCTACGAGAAGTACGATGATCGCT ATGACATCTCCAAGGAGCCCAAAGAGCCGCACCGTCATGGCTTTGTGACGGAGATCAACCCGTCGGATGCGACGTCCGTG CCGGTGAAGCGCACCGCCCTTGGCCGTTTCAAACATGAAAACGCCGAGATGGTGCATGCGGCGGATGGTCGGATCGTTGT CTATATGGGTGACGATGAGCGGGGTGAGTATCTCTATAAATACGTCTCCACGAACACTTGGACCGAGGGCGCGCCGACGG AGGGACTTTTGGACGATGGTCAGCTCTATGCCGCCAAGTTCAACGATGACCAGACCGGTGAGTGGTTGGCACTGACGCCT GAGGCCACAGGTATGTCGGAGGCAGAGATCCTGTGTTTCACCCGTATGGCAGCCTCTGCGGTGGGAGCGACCACCATGGA TCGCCCCGAATGGGTCGCTTGCAACCCGCTCAAGGCCGAAGGCTATTGCGCGTTGACCAACAACAAGAATCGCGGTGTGA AGCCCAATGCCGGTGGCGACGACGCATCTGTGAATGGTCCAAACCCGCGCGAAACCAACAAGTATGGCCAGATCGTGCGC TGGGCCCCCTCGGAGGACAATCACGCCGCCGAAGGCTTCACATGGGATCTCTATGTGATGGCGGGAAATCCAACCGTCTA CGACAATGCCTACGCCGGGTCTGCCAATGTCAACGCGGGCAATATGTTCAACTCGCCGGACGGGATGGCCTTCTCATCCG ACGGGATGCTTTGGATTCAAACCGATGGCGATGATGACAACGAGGGTGACTTTGCCGGGCAGGGCAACAACCAGATGTTG GTTGGTGACCCCGAGTCGGGTGAGATTGCGCGTTTCATGACCGTGCCCAACGGGGCTGAGGTGACAGGCCTGTGCTGGTC GCTCGACAAGACAGTGGCCTTTGTGGGCGTGCAGCATCCGGGTGGTGCGTGGCCTGATGGTGCGGGCAAGCCGCGGTCGT CGATCGTGGCGGTCTGGCGCGAAGATGGTGCGATGATCGGCTAA
Upstream 100 bases:
>100_bases GTCATAAGCATGATACATCGGACCTTGAGAACGCTCTTGAAGCGCGGCCAGTTGAATGTGGCCACGCCCCAGCCAGTGTG ATCGCAAGGAGCATAGGAAT
Downstream 100 bases:
>100_bases GGCCGATCCGTGTATCTGTGGCTGGCCCCAATCAACGGGGCCAGTTTGCGCCCTCAGCGTTTGCGATCTGCGGGATAGAC GCCGAGGATTTCCACATCGG
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: Phosphatase; Tat Pathway Signal Sequence Domain-Containing Protein; Tat Pathway Signal Sequence Domain Protein; Twin-Arginine Translocation Pathway Signal Protein; UxpB Protein; DTDP-Glucose 4 6-Dehydratase; Twin Arginine Translocation Pathway Signal Protein; DTDP-D-Glucose 4 6-Dehydratase; Glutamate-Cysteine Ligase/Putative Amino Acid Ligase; Alkaline Phosphatase Family Protein; Exported Protein
Number of amino acids: Translated: 627; Mature: 627
Protein sequence:
>627_residues MVEKSLIDLSWDDFDEHRSPRPDQNQFDAVVERAVSRRGFLGGALAFGSGAAVFGTGLISSTTASRAHAHAKFAFTPIGI ATDHAVHVPEGYKSQVLVRWGDALWSDAEGAYSADTGISLAMSDKVFGENTDGMELFEVDGREILVVNSEYVNPKINLPA SSEGVPQDADEVQLLKNLQGVTVMEIARGATGYQVVKDSPYNRRITHETEMTLAGPLAGDELVKTDADPSGRRVKGTMNN CGSGKTLWGTYLTCEENFNGYFGATGEMPEGEGYIRYGIGGEGRYAYEKYDDRYDISKEPKEPHRHGFVTEINPSDATSV PVKRTALGRFKHENAEMVHAADGRIVVYMGDDERGEYLYKYVSTNTWTEGAPTEGLLDDGQLYAAKFNDDQTGEWLALTP EATGMSEAEILCFTRMAASAVGATTMDRPEWVACNPLKAEGYCALTNNKNRGVKPNAGGDDASVNGPNPRETNKYGQIVR WAPSEDNHAAEGFTWDLYVMAGNPTVYDNAYAGSANVNAGNMFNSPDGMAFSSDGMLWIQTDGDDDNEGDFAGQGNNQML VGDPESGEIARFMTVPNGAEVTGLCWSLDKTVAFVGVQHPGGAWPDGAGKPRSSIVAVWREDGAMIG
Sequences:
>Translated_627_residues MVEKSLIDLSWDDFDEHRSPRPDQNQFDAVVERAVSRRGFLGGALAFGSGAAVFGTGLISSTTASRAHAHAKFAFTPIGI ATDHAVHVPEGYKSQVLVRWGDALWSDAEGAYSADTGISLAMSDKVFGENTDGMELFEVDGREILVVNSEYVNPKINLPA SSEGVPQDADEVQLLKNLQGVTVMEIARGATGYQVVKDSPYNRRITHETEMTLAGPLAGDELVKTDADPSGRRVKGTMNN CGSGKTLWGTYLTCEENFNGYFGATGEMPEGEGYIRYGIGGEGRYAYEKYDDRYDISKEPKEPHRHGFVTEINPSDATSV PVKRTALGRFKHENAEMVHAADGRIVVYMGDDERGEYLYKYVSTNTWTEGAPTEGLLDDGQLYAAKFNDDQTGEWLALTP EATGMSEAEILCFTRMAASAVGATTMDRPEWVACNPLKAEGYCALTNNKNRGVKPNAGGDDASVNGPNPRETNKYGQIVR WAPSEDNHAAEGFTWDLYVMAGNPTVYDNAYAGSANVNAGNMFNSPDGMAFSSDGMLWIQTDGDDDNEGDFAGQGNNQML VGDPESGEIARFMTVPNGAEVTGLCWSLDKTVAFVGVQHPGGAWPDGAGKPRSSIVAVWREDGAMIG >Mature_627_residues MVEKSLIDLSWDDFDEHRSPRPDQNQFDAVVERAVSRRGFLGGALAFGSGAAVFGTGLISSTTASRAHAHAKFAFTPIGI ATDHAVHVPEGYKSQVLVRWGDALWSDAEGAYSADTGISLAMSDKVFGENTDGMELFEVDGREILVVNSEYVNPKINLPA SSEGVPQDADEVQLLKNLQGVTVMEIARGATGYQVVKDSPYNRRITHETEMTLAGPLAGDELVKTDADPSGRRVKGTMNN CGSGKTLWGTYLTCEENFNGYFGATGEMPEGEGYIRYGIGGEGRYAYEKYDDRYDISKEPKEPHRHGFVTEINPSDATSV PVKRTALGRFKHENAEMVHAADGRIVVYMGDDERGEYLYKYVSTNTWTEGAPTEGLLDDGQLYAAKFNDDQTGEWLALTP EATGMSEAEILCFTRMAASAVGATTMDRPEWVACNPLKAEGYCALTNNKNRGVKPNAGGDDASVNGPNPRETNKYGQIVR WAPSEDNHAAEGFTWDLYVMAGNPTVYDNAYAGSANVNAGNMFNSPDGMAFSSDGMLWIQTDGDDDNEGDFAGQGNNQML VGDPESGEIARFMTVPNGAEVTGLCWSLDKTVAFVGVQHPGGAWPDGAGKPRSSIVAVWREDGAMIG
Specific function: Unknown
COG id: COG3211
COG function: function code R; Predicted phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67729; Mature: 67729
Theoretical pI: Translated: 4.35; Mature: 4.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVEKSLIDLSWDDFDEHRSPRPDQNQFDAVVERAVSRRGFLGGALAFGSGAAVFGTGLIS CCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCHHC STTASRAHAHAKFAFTPIGIATDHAVHVPEGYKSQVLVRWGDALWSDAEGAYSADTGISL CCCHHHHHCEEEEEEEECCCCCCCEEECCCCCCCEEEEEECCHHHCCCCCCEECCCCEEE AMSDKVFGENTDGMELFEVDGREILVVNSEYVNPKINLPASSEGVPQDADEVQLLKNLQG EEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCEEECCCCCCCCCCCHHHHHHHHHCCC VTVMEIARGATGYQVVKDSPYNRRITHETEMTLAGPLAGDELVKTDADPSGRRVKGTMNN CEEEHHHCCCCCEEEEECCCCCCEEEECCCEEEECCCCCCHHEECCCCCCCCEEEECCCC CGSGKTLWGTYLTCEENFNGYFGATGEMPEGEGYIRYGIGGEGRYAYEKYDDRYDISKEP CCCCCEEEEEEEEEECCCCEEECCCCCCCCCCCEEEECCCCCCCEEHHCCCCCCCCCCCC KEPHRHGFVTEINPSDATSVPVKRTALGRFKHENAEMVHAADGRIVVYMGDDERGEYLYK CCHHHCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCCCEEEE YVSTNTWTEGAPTEGLLDDGQLYAAKFNDDQTGEWLALTPEATGMSEAEILCFTRMAASA EECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEHHHHHHH VGATTMDRPEWVACNPLKAEGYCALTNNKNRGVKPNAGGDDASVNGPNPRETNKYGQIVR HCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE WAPSEDNHAAEGFTWDLYVMAGNPTVYDNAYAGSANVNAGNMFNSPDGMAFSSDGMLWIQ ECCCCCCCCCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEE TDGDDDNEGDFAGQGNNQMLVGDPESGEIARFMTVPNGAEVTGLCWSLDKTVAFVGVQHP ECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCEEEEEEEECC GGAWPDGAGKPRSSIVAVWREDGAMIG CCCCCCCCCCCCCEEEEEECCCCCCCC >Mature Secondary Structure MVEKSLIDLSWDDFDEHRSPRPDQNQFDAVVERAVSRRGFLGGALAFGSGAAVFGTGLIS CCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCHHC STTASRAHAHAKFAFTPIGIATDHAVHVPEGYKSQVLVRWGDALWSDAEGAYSADTGISL CCCHHHHHCEEEEEEEECCCCCCCEEECCCCCCCEEEEEECCHHHCCCCCCEECCCCEEE AMSDKVFGENTDGMELFEVDGREILVVNSEYVNPKINLPASSEGVPQDADEVQLLKNLQG EEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCEEECCCCCCCCCCCHHHHHHHHHCCC VTVMEIARGATGYQVVKDSPYNRRITHETEMTLAGPLAGDELVKTDADPSGRRVKGTMNN CEEEHHHCCCCCEEEEECCCCCCEEEECCCEEEECCCCCCHHEECCCCCCCCEEEECCCC CGSGKTLWGTYLTCEENFNGYFGATGEMPEGEGYIRYGIGGEGRYAYEKYDDRYDISKEP CCCCCEEEEEEEEEECCCCEEECCCCCCCCCCCEEEECCCCCCCEEHHCCCCCCCCCCCC KEPHRHGFVTEINPSDATSVPVKRTALGRFKHENAEMVHAADGRIVVYMGDDERGEYLYK CCHHHCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCCCEEEE YVSTNTWTEGAPTEGLLDDGQLYAAKFNDDQTGEWLALTPEATGMSEAEILCFTRMAASA EECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEHHHHHHH VGATTMDRPEWVACNPLKAEGYCALTNNKNRGVKPNAGGDDASVNGPNPRETNKYGQIVR HCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE WAPSEDNHAAEGFTWDLYVMAGNPTVYDNAYAGSANVNAGNMFNSPDGMAFSSDGMLWIQ ECCCCCCCCCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEE TDGDDDNEGDFAGQGNNQMLVGDPESGEIARFMTVPNGAEVTGLCWSLDKTVAFVGVQHP ECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCEEEEEEEECC GGAWPDGAGKPRSSIVAVWREDGAMIG CCCCCCCCCCCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA