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The map label for this gene is cycM [H]

Identifier: 99082393

GI number: 99082393

Start: 2697020

End: 2697520

Strand: Reverse

Name: cycM [H]

Synonym: TM1040_2553

Alternate gene names: 99082393

Gene position: 2697520-2697020 (Counterclockwise)

Preceding gene: 99082395

Following gene: 99082392

Centisome position: 84.27

GC content: 58.48

Gene sequence:

>501_bases
ATGTTTGACACAATGACACTCACCAAAGCGACCGCAGGTTTCTGTGGCGCGTTCCTTGTGTTCCTCTTGGGCAAATGGGT
TGCCGAGGAGCTCTATCACGTTGAGGCACACGGAGAGGCGTCCTACGTCATCGAGGTGGCTGATGCAGGTGGTGCAAGCG
ACGAGCCTGAGGTGGACTTTGCGACGCTGATGGCCTCGGCGGATGTCGACAAGGGTGCTAAAGTCTTCCGCAAGTGCTCC
GCATGCCACAAGCTTGACGGCACTGATGCAACCGGCCCGCACCTCGACGGTGTTGTTGGCCGCGATATCGCAGCCAGCGC
AGGCTTTGGCTACTCCGGTGCGCTGACCGCGCTTGAGGGCGCTTGGACACCAGAAGCGCTGAACGAATTCCTCCTCAAGC
CGTCCGACTATGCCTCCGGGACCACCATGTCCTTTGCAGGTTTGAAAAAGGTTGAGGACCGGGTGAACCTGATCGCCTAT
CTGCAGACCACTGCAAACTAA

Upstream 100 bases:

>100_bases
AACTTGGGAATTTGGTCGTTTAGTCGCGGTGTCTATACCTTGCCAGTTGATAGGGGAAGCCTTAGACACCCTGTTAGACA
GCTGAAATGGACACGCTATC

Downstream 100 bases:

>100_bases
GTGCGACGCGCACAGGGTTAACGTGAAAAGGCCGCAGCACTGCTGCGGCCTTTTCTTTTGACGCTTGCGCCCTAAACCGT
TGATTGAAATCGACCAAGGG

Product: cytochrome c, class I

Products: NA

Alternate protein names: Cytochrome c552 [H]

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MFDTMTLTKATAGFCGAFLVFLLGKWVAEELYHVEAHGEASYVIEVADAGGASDEPEVDFATLMASADVDKGAKVFRKCS
ACHKLDGTDATGPHLDGVVGRDIAASAGFGYSGALTALEGAWTPEALNEFLLKPSDYASGTTMSFAGLKKVEDRVNLIAY
LQTTAN

Sequences:

>Translated_166_residues
MFDTMTLTKATAGFCGAFLVFLLGKWVAEELYHVEAHGEASYVIEVADAGGASDEPEVDFATLMASADVDKGAKVFRKCS
ACHKLDGTDATGPHLDGVVGRDIAASAGFGYSGALTALEGAWTPEALNEFLLKPSDYASGTTMSFAGLKKVEDRVNLIAY
LQTTAN
>Mature_166_residues
MFDTMTLTKATAGFCGAFLVFLLGKWVAEELYHVEAHGEASYVIEVADAGGASDEPEVDFATLMASADVDKGAKVFRKCS
ACHKLDGTDATGPHLDGVVGRDIAASAGFGYSGALTALEGAWTPEALNEFLLKPSDYASGTTMSFAGLKKVEDRVNLIAY
LQTTAN

Specific function: Mediates the electron transport between the cytochrome bc1 complex and cytochrome-c oxidase [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI11128019, Length=103, Percent_Identity=41.747572815534, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17539604, Length=101, Percent_Identity=44.5544554455446, Blast_Score=88, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17566554, Length=104, Percent_Identity=38.4615384615385, Blast_Score=80, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6320796, Length=108, Percent_Identity=35.1851851851852, Blast_Score=78, Evalue=8e-16,
Organism=Saccharomyces cerevisiae, GI6322508, Length=104, Percent_Identity=35.5769230769231, Blast_Score=74, Evalue=1e-14,
Organism=Drosophila melanogaster, GI17137204, Length=104, Percent_Identity=43.2692307692308, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI17137228, Length=103, Percent_Identity=41.747572815534, Blast_Score=86, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 17452; Mature: 17452

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDTMTLTKATAGFCGAFLVFLLGKWVAEELYHVEAHGEASYVIEVADAGGASDEPEVDF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHH
ATLMASADVDKGAKVFRKCSACHKLDGTDATGPHLDGVVGRDIAASAGFGYSGALTALEG
HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHCC
AWTPEALNEFLLKPSDYASGTTMSFAGLKKVEDRVNLIAYLQTTAN
CCCHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHEEECCC
>Mature Secondary Structure
MFDTMTLTKATAGFCGAFLVFLLGKWVAEELYHVEAHGEASYVIEVADAGGASDEPEVDF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHH
ATLMASADVDKGAKVFRKCSACHKLDGTDATGPHLDGVVGRDIAASAGFGYSGALTALEG
HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHCC
AWTPEALNEFLLKPSDYASGTTMSFAGLKKVEDRVNLIAYLQTTAN
CCCHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7628479 [H]