Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is yejA [H]

Identifier: 99082392

GI number: 99082392

Start: 2694826

End: 2696676

Strand: Reverse

Name: yejA [H]

Synonym: TM1040_2552

Alternate gene names: 99082392

Gene position: 2696676-2694826 (Counterclockwise)

Preceding gene: 99082393

Following gene: 99082391

Centisome position: 84.25

GC content: 59.0

Gene sequence:

>1851_bases
ATGTCCACCGCGGCCCTGATGACCTCGGCGCTTGCGGTAAAGAGCACAGAGAGCGAGGCGATCACCGTCAGCCATGGCTA
TTCGTTTTACGGCGATCTGGATTATCCGGCTGATTTTGAACACTTCGACTATGTAAACCCGGACGCGCCGAAGGGAGGGG
AGCTTGCGATTCCCTTCATCGGGACTCTCGACAGCATGAACCCCTATTCTGGCAAGGGTCGGGCGCATGCGTTTTCTGTC
TACCCTTACGAGAGCCTCCTCTCGGATGCGGCACCTGCGGATAAATATGGTCAGTCCTACTGCCTGCTCTGCGAAACCGT
GGAATATCCCGAAGACAAGAGCTGGGTGATCTTTCGCATGCGTCCCGAGGCGCGGTTCTCCGACGGCACACCGGTCACCG
CACATGACATCGCCTTCAGCCACAACCTGCTGCTGGATCAAGGTTTGAAGTCCTACGCAGACTTCATTCGCCGGCTGATC
CCAAAAGTTGAGGTGATCGACGATCACACCATCAAGTTCTATTTTGCTGATGGCGTCTCACGCCGGAGCCTGATCGAGCA
GGTGGGCGGCGTACCGGCCTGGTCGAAGAAGTGGTTCGATGAAACGGGACAGAAGCTCAACGAGAACTGGATCGAGGGGC
CTCCGGGCTCTGGTCCCTATGTGATCGAGGAAATCGACCTGTCGCGTCGTATCGTGCTGAAACGCAACCCTGATTATTGG
GGCAAGGATCTGCCGGTCAACCAGGGGCGGCACAACTTTGATTCGCTGCGGGTGGAAATCTTTGCCGACGACACGGCAGC
CTTTGAGGCCTTCAAGGCGGGCGAGTATACCTTCCGCGCCGAAGGCGACAGCAAGAAATGGGCCAGCGGCTATGACTTTC
CGAAGGTCGATAGCGGCGCGGTGAAACTCGAAGAGCTGCCAAATGGTGCACCGCCTGCGTCATCGGGCATCGTGTTCAAT
CTCGCCTCTCCCGAATTGCAAGATCGGCGTGTGCGCGAAGCGCTGGCTCTGGCGTTCAACTTCGAGTGGTCCAACGAGAG
CCTTCTCTATGGTCTCTTTGATCGCCGTGCGTCGTTCACCCAGAACTCCCCCCTGATGGCCAAAGGTGTGCCCGAGGGCG
CCGAGCGCGCGTTTCTGCAGAGCCTCGGCGACCTTGTTCCGGACGAGATGCTGACCGAGGAGGTCTATATCCCGCCGACC
TCCGATCCTTCGCGACTGTTTGACCGCCGCAACGCACGCAAGGCAGCGGCCTTGCTGGATGCGGCCGGGTATACGGTGGG
CGATGGCGGCATGCGCATGTCTCCGGATGGCTCTGCGTTTGAGCTGGATTTCCTGTTTTCCTCCTCATCCTCGCCCACCA
CGCGCGGGGTGATGGAGAACTTCGTCGACAACCTCGAAAACCTTGGCGTTCAGGTCAATTTCGAGGTGGTGGATACGGCG
CAATACACCAGCCGGGAACGGGACCGCGATTATGATCTGGTGGTCGACAGCTACACCACGTTCCTTGGCACCGGTACCGG
TCTGGAGCAGCGGTTTGGGTCCGAGGCCGCAGCCTTCTCGCTGTTCAACCCCGCCGGTTTGGCCTCCCCGCTGGTGGATG
AGATCATCACGAGATCGCTGCACGCTGAGACCCGCGAAGAAGAAACTACCGTCATGACGGCGCTGGATCGCGCTTTGCGG
CATGAGTTCATCATGATCCCGCTGTGGTATAACCCGAACCATTGGGCCGCCTATTACGATCAATATGAGCACCCGGCGGA
AATCCCGCCCTATAGCCTCGGGTATCTGGACTTCTGGTGGTATAACGAGGACAAGGCCAAAGCGCTGCGCGATGCTGGCG
CGCTGAGGTAA

Upstream 100 bases:

>100_bases
GGTTAGGCAGATGACGATCAGACGTGCGACAGCGACCGCAACAGGAACTGCAAAAGCCCGCACTCGATCGTGGTTAAAAC
CTTTCGCGGGGGCGGTCCTC

Downstream 100 bases:

>100_bases
GCTCCCGATGTTAAACTATATTCTGCGGCGTCTTCTGCTGGTGATCCCGACACTGATCGGGATCATGGTAGTGAATTTCG
CGCTCGTGCAGTTTGTCCCC

Product: extracellular solute-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 616; Mature: 615

Protein sequence:

>616_residues
MSTAALMTSALAVKSTESEAITVSHGYSFYGDLDYPADFEHFDYVNPDAPKGGELAIPFIGTLDSMNPYSGKGRAHAFSV
YPYESLLSDAAPADKYGQSYCLLCETVEYPEDKSWVIFRMRPEARFSDGTPVTAHDIAFSHNLLLDQGLKSYADFIRRLI
PKVEVIDDHTIKFYFADGVSRRSLIEQVGGVPAWSKKWFDETGQKLNENWIEGPPGSGPYVIEEIDLSRRIVLKRNPDYW
GKDLPVNQGRHNFDSLRVEIFADDTAAFEAFKAGEYTFRAEGDSKKWASGYDFPKVDSGAVKLEELPNGAPPASSGIVFN
LASPELQDRRVREALALAFNFEWSNESLLYGLFDRRASFTQNSPLMAKGVPEGAERAFLQSLGDLVPDEMLTEEVYIPPT
SDPSRLFDRRNARKAAALLDAAGYTVGDGGMRMSPDGSAFELDFLFSSSSSPTTRGVMENFVDNLENLGVQVNFEVVDTA
QYTSRERDRDYDLVVDSYTTFLGTGTGLEQRFGSEAAAFSLFNPAGLASPLVDEIITRSLHAETREEETTVMTALDRALR
HEFIMIPLWYNPNHWAAYYDQYEHPAEIPPYSLGYLDFWWYNEDKAKALRDAGALR

Sequences:

>Translated_616_residues
MSTAALMTSALAVKSTESEAITVSHGYSFYGDLDYPADFEHFDYVNPDAPKGGELAIPFIGTLDSMNPYSGKGRAHAFSV
YPYESLLSDAAPADKYGQSYCLLCETVEYPEDKSWVIFRMRPEARFSDGTPVTAHDIAFSHNLLLDQGLKSYADFIRRLI
PKVEVIDDHTIKFYFADGVSRRSLIEQVGGVPAWSKKWFDETGQKLNENWIEGPPGSGPYVIEEIDLSRRIVLKRNPDYW
GKDLPVNQGRHNFDSLRVEIFADDTAAFEAFKAGEYTFRAEGDSKKWASGYDFPKVDSGAVKLEELPNGAPPASSGIVFN
LASPELQDRRVREALALAFNFEWSNESLLYGLFDRRASFTQNSPLMAKGVPEGAERAFLQSLGDLVPDEMLTEEVYIPPT
SDPSRLFDRRNARKAAALLDAAGYTVGDGGMRMSPDGSAFELDFLFSSSSSPTTRGVMENFVDNLENLGVQVNFEVVDTA
QYTSRERDRDYDLVVDSYTTFLGTGTGLEQRFGSEAAAFSLFNPAGLASPLVDEIITRSLHAETREEETTVMTALDRALR
HEFIMIPLWYNPNHWAAYYDQYEHPAEIPPYSLGYLDFWWYNEDKAKALRDAGALR
>Mature_615_residues
STAALMTSALAVKSTESEAITVSHGYSFYGDLDYPADFEHFDYVNPDAPKGGELAIPFIGTLDSMNPYSGKGRAHAFSVY
PYESLLSDAAPADKYGQSYCLLCETVEYPEDKSWVIFRMRPEARFSDGTPVTAHDIAFSHNLLLDQGLKSYADFIRRLIP
KVEVIDDHTIKFYFADGVSRRSLIEQVGGVPAWSKKWFDETGQKLNENWIEGPPGSGPYVIEEIDLSRRIVLKRNPDYWG
KDLPVNQGRHNFDSLRVEIFADDTAAFEAFKAGEYTFRAEGDSKKWASGYDFPKVDSGAVKLEELPNGAPPASSGIVFNL
ASPELQDRRVREALALAFNFEWSNESLLYGLFDRRASFTQNSPLMAKGVPEGAERAFLQSLGDLVPDEMLTEEVYIPPTS
DPSRLFDRRNARKAAALLDAAGYTVGDGGMRMSPDGSAFELDFLFSSSSSPTTRGVMENFVDNLENLGVQVNFEVVDTAQ
YTSRERDRDYDLVVDSYTTFLGTGTGLEQRFGSEAAAFSLFNPAGLASPLVDEIITRSLHAETREEETTVMTALDRALRH
EFIMIPLWYNPNHWAAYYDQYEHPAEIPPYSLGYLDFWWYNEDKAKALRDAGALR

Specific function: Unknown

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae hbpA [H]

Homologues:

Organism=Escherichia coli, GI87082063, Length=612, Percent_Identity=33.6601307189542, Blast_Score=344, Evalue=9e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 68932; Mature: 68801

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAALMTSALAVKSTESEAITVSHGYSFYGDLDYPADFEHFDYVNPDAPKGGELAIPFI
CCHHHHHHHHHHEECCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEE
GTLDSMNPYSGKGRAHAFSVYPYESLLSDAAPADKYGQSYCLLCETVEYPEDKSWVIFRM
ECCCCCCCCCCCCCEEEEEECCHHHHHHCCCCHHHHCCCEEEEEEECCCCCCCCEEEEEE
RPEARFSDGTPVTAHDIAFSHNLLLDQGLKSYADFIRRLIPKVEVIDDHTIKFYFADGVS
CCCCCCCCCCCCEEHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCC
RRSLIEQVGGVPAWSKKWFDETGQKLNENWIEGPPGSGPYVIEEIDLSRRIVLKRNPDYW
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCC
GKDLPVNQGRHNFDSLRVEIFADDTAAFEAFKAGEYTFRAEGDSKKWASGYDFPKVDSGA
CCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCC
VKLEELPNGAPPASSGIVFNLASPELQDRRVREALALAFNFEWSNESLLYGLFDRRASFT
EEHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHEEEEEECCCCCCEEEEHHHHHCCCC
QNSPLMAKGVPEGAERAFLQSLGDLVPDEMLTEEVYIPPTSDPSRLFDRRNARKAAALLD
CCCCEEECCCCCHHHHHHHHHHHHHCCHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHH
AAGYTVGDGGMRMSPDGSAFELDFLFSSSSSPTTRGVMENFVDNLENLGVQVNFEVVDTA
HCCCEECCCCEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEECH
QYTSRERDRDYDLVVDSYTTFLGTGTGLEQRFGSEAAAFSLFNPAGLASPLVDEIITRSL
HHHHHCCCCCCEEEEECHHHHHCCCCCHHHHHCCCHHEEEECCCCCCCHHHHHHHHHHHH
HAETREEETTVMTALDRALRHEFIMIPLWYNPNHWAAYYDQYEHPAEIPPYSLGYLDFWW
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCEEEEE
YNEDKAKALRDAGALR
ECCHHHHHHHHHCCCC
>Mature Secondary Structure 
STAALMTSALAVKSTESEAITVSHGYSFYGDLDYPADFEHFDYVNPDAPKGGELAIPFI
CHHHHHHHHHHEECCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEE
GTLDSMNPYSGKGRAHAFSVYPYESLLSDAAPADKYGQSYCLLCETVEYPEDKSWVIFRM
ECCCCCCCCCCCCCEEEEEECCHHHHHHCCCCHHHHCCCEEEEEEECCCCCCCCEEEEEE
RPEARFSDGTPVTAHDIAFSHNLLLDQGLKSYADFIRRLIPKVEVIDDHTIKFYFADGVS
CCCCCCCCCCCCEEHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCC
RRSLIEQVGGVPAWSKKWFDETGQKLNENWIEGPPGSGPYVIEEIDLSRRIVLKRNPDYW
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCC
GKDLPVNQGRHNFDSLRVEIFADDTAAFEAFKAGEYTFRAEGDSKKWASGYDFPKVDSGA
CCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCC
VKLEELPNGAPPASSGIVFNLASPELQDRRVREALALAFNFEWSNESLLYGLFDRRASFT
EEHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHEEEEEECCCCCCEEEEHHHHHCCCC
QNSPLMAKGVPEGAERAFLQSLGDLVPDEMLTEEVYIPPTSDPSRLFDRRNARKAAALLD
CCCCEEECCCCCHHHHHHHHHHHHHCCHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHH
AAGYTVGDGGMRMSPDGSAFELDFLFSSSSSPTTRGVMENFVDNLENLGVQVNFEVVDTA
HCCCEECCCCEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEECH
QYTSRERDRDYDLVVDSYTTFLGTGTGLEQRFGSEAAAFSLFNPAGLASPLVDEIITRSL
HHHHHCCCCCCEEEEECHHHHHCCCCCHHHHHCCCHHEEEECCCCCCCHHHHHHHHHHHH
HAETREEETTVMTALDRALRHEFIMIPLWYNPNHWAAYYDQYEHPAEIPPYSLGYLDFWW
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCEEEEE
YNEDKAKALRDAGALR
ECCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9097040 [H]