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The map label for this gene is ctaD [H]

Identifier: 99082385

GI number: 99082385

Start: 2685879

End: 2687483

Strand: Reverse

Name: ctaD [H]

Synonym: TM1040_2545

Alternate gene names: 99082385

Gene position: 2687483-2685879 (Counterclockwise)

Preceding gene: 99082387

Following gene: 99082384

Centisome position: 83.96

GC content: 58.38

Gene sequence:

>1605_bases
ATGTCTAATTATCTCAAGCTGATAGTGCTTGGCGTATTGACGGTCTTCTTCATGATCGCCGCCGGCTACGCCAGGGATCT
GGCGTATCAGGTACATGCGGTGATCTTGATGCTCGTCGCAGGTGGCCTGTTCTTGTGGACACTGCGCGAGACCGACGAGC
CGGTTCCGGCTCCCGTCACCGGGGAATATCTCGATGGCGTGGTGCGCGCAGGTGTCATTGCAACCGCATTCTGGGGTGTC
GCGGGGTTCCTTGTGGGGACCTTCATTGCGTTCCAGCTGGCTTTTCCGGTTCTGAATTTTGATTGGTCCGAAGGGTTTGC
GAATTTTGGCCGCCTGCGTCCGCTGCACACATCTGCAGTGATTTTTGCGTTTGGCGGTAACGCGTTGATCGCGACGTCCT
TTTACATCGTGCAGCGCACCTCGGCGGCACGACTCTGGGGCGGCAACCTCGCGTGGTTTGTCTTCTGGGGCTATCAGCTG
TTTATCGTGCTTGCGGCAACCGGCTATCTCTTGGGCGGAACGCAGTCCAAGGAATACGCTGAGCCCGAGTGGTACATCGA
CCTGTGGCTGACCGTTGTCTGGGTGGCCTATCTGGCGGTGTTCCTCGGTACCATCATTCGCCGCAAAGAGCGCCACATCT
ATGTGGCCAACTGGTTTTTCCTCGCCTTCATCGTGACCGTCGCGATGCTGCACCTCGTCAACAACCTGACCATTCCTGTT
TCGATCTGGGGCTCCAAGTCCGTGATTGTCTGGCCTGGTGTACAGGATGCCATGGTGCAGTGGTGGTATGGCCACAACGC
GGTGGGCTTCTTCCTGACCGCAGGCTTCCTCGGCATGATGTATTATTTCATTCCCAAGCAGGCAGATCGTCCGGTTTACA
GCTATAAACTGTCGATCATCCACTTTTGGGCGCTGATCTTCATCTACATCTGGGCCGGCCCACACCACCTGCATTATACC
GCGCTGCCGGACTGGGCCTCGACGCTGGGCATGGTGTTCTCGATCGTGCTGTGGATGCCCTCCTGGGGTGGCATGATCAA
CGGTCTGATGACGCTCTCGGGCGCTTGGGACAAGCTGCGCACCGATCCGGTCCTGCGGATGCTGGTGATCTCGGTTGGCT
TCTACGGCATGTCCACATTTGAGGGTCCGATGATGTCGATCCGTGCGGTGAACTCGCTGAGCCACTACACCGACTGGACC
ATTGGTCACGTGCACTCTGGTGCGCTGGGCTGGAATGGTATGATCACCTTCGGTGCGCTCTACTACCTGACCCCGGTTCT
GTGGAAGCGTGAGCGGCTCTACTCCCTGAGCCTGGTCAGCTGGCACTTCTGGCTCGCGACCATCGGCATCGTTCTCTATG
CGGCGTCCATGTGGGTGACCGGTATCATGGAAGGCCTGATGTGGCGTGAAGTGGATGCGAACGGCTTCCTCGTGTGGTCC
TTTGCCGACACCGTTGCTGCGAAGCTTCCGATGTATGTGATGCGTGGTTTGGGCGGGGTTCTGTTCCTCACCGGGTCGCT
GGTCATGTGCTATAACCTCTGGATGACCGTTCGTCGGGCGCCGGCCAAAGAGGCCAGCCTGTCCGTCGCGGTCCCGGCTG
AATAA

Upstream 100 bases:

>100_bases
TGTTTGAAGAACCGCGCTCTGGCATCAGGGACGGGGAAACGACGCCCGAAGTGTATCTGCGAGGGACACGATTCGGGTGA
ATCATTCAAAGGGGCATGAA

Downstream 100 bases:

>100_bases
GGAGGGCCGGAGAGATGGCAATTCTCGACAAACATAAAATCCTCGAGACCAACGCAACGCTTCTGCTGATCTGTTCCTTT
CTCGTGGTTACCATCGGTGG

Product: cbb3-type cytochrome c oxidase subunit I

Products: NA

Alternate protein names: Cytochrome BB(3) subunit 1; Cytochrome c oxidase polypeptide I [H]

Number of amino acids: Translated: 534; Mature: 533

Protein sequence:

>534_residues
MSNYLKLIVLGVLTVFFMIAAGYARDLAYQVHAVILMLVAGGLFLWTLRETDEPVPAPVTGEYLDGVVRAGVIATAFWGV
AGFLVGTFIAFQLAFPVLNFDWSEGFANFGRLRPLHTSAVIFAFGGNALIATSFYIVQRTSAARLWGGNLAWFVFWGYQL
FIVLAATGYLLGGTQSKEYAEPEWYIDLWLTVVWVAYLAVFLGTIIRRKERHIYVANWFFLAFIVTVAMLHLVNNLTIPV
SIWGSKSVIVWPGVQDAMVQWWYGHNAVGFFLTAGFLGMMYYFIPKQADRPVYSYKLSIIHFWALIFIYIWAGPHHLHYT
ALPDWASTLGMVFSIVLWMPSWGGMINGLMTLSGAWDKLRTDPVLRMLVISVGFYGMSTFEGPMMSIRAVNSLSHYTDWT
IGHVHSGALGWNGMITFGALYYLTPVLWKRERLYSLSLVSWHFWLATIGIVLYAASMWVTGIMEGLMWREVDANGFLVWS
FADTVAAKLPMYVMRGLGGVLFLTGSLVMCYNLWMTVRRAPAKEASLSVAVPAE

Sequences:

>Translated_534_residues
MSNYLKLIVLGVLTVFFMIAAGYARDLAYQVHAVILMLVAGGLFLWTLRETDEPVPAPVTGEYLDGVVRAGVIATAFWGV
AGFLVGTFIAFQLAFPVLNFDWSEGFANFGRLRPLHTSAVIFAFGGNALIATSFYIVQRTSAARLWGGNLAWFVFWGYQL
FIVLAATGYLLGGTQSKEYAEPEWYIDLWLTVVWVAYLAVFLGTIIRRKERHIYVANWFFLAFIVTVAMLHLVNNLTIPV
SIWGSKSVIVWPGVQDAMVQWWYGHNAVGFFLTAGFLGMMYYFIPKQADRPVYSYKLSIIHFWALIFIYIWAGPHHLHYT
ALPDWASTLGMVFSIVLWMPSWGGMINGLMTLSGAWDKLRTDPVLRMLVISVGFYGMSTFEGPMMSIRAVNSLSHYTDWT
IGHVHSGALGWNGMITFGALYYLTPVLWKRERLYSLSLVSWHFWLATIGIVLYAASMWVTGIMEGLMWREVDANGFLVWS
FADTVAAKLPMYVMRGLGGVLFLTGSLVMCYNLWMTVRRAPAKEASLSVAVPAE
>Mature_533_residues
SNYLKLIVLGVLTVFFMIAAGYARDLAYQVHAVILMLVAGGLFLWTLRETDEPVPAPVTGEYLDGVVRAGVIATAFWGVA
GFLVGTFIAFQLAFPVLNFDWSEGFANFGRLRPLHTSAVIFAFGGNALIATSFYIVQRTSAARLWGGNLAWFVFWGYQLF
IVLAATGYLLGGTQSKEYAEPEWYIDLWLTVVWVAYLAVFLGTIIRRKERHIYVANWFFLAFIVTVAMLHLVNNLTIPVS
IWGSKSVIVWPGVQDAMVQWWYGHNAVGFFLTAGFLGMMYYFIPKQADRPVYSYKLSIIHFWALIFIYIWAGPHHLHYTA
LPDWASTLGMVFSIVLWMPSWGGMINGLMTLSGAWDKLRTDPVLRMLVISVGFYGMSTFEGPMMSIRAVNSLSHYTDWTI
GHVHSGALGWNGMITFGALYYLTPVLWKRERLYSLSLVSWHFWLATIGIVLYAASMWVTGIMEGLMWREVDANGFLVWSF
ADTVAAKLPMYVMRGLGGVLFLTGSLVMCYNLWMTVRRAPAKEASLSVAVPAE

Specific function: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. Co I is the catalytic subunit of the enzyme. Electrons originating in cytochrome

COG id: COG3278

COG function: function code O; Cbb3-type cytochrome oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the heme-copper respiratory oxidase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004677
- InterPro:   IPR000883 [H]

Pfam domain/function: PF00115 COX1 [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 60018; Mature: 59887

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNYLKLIVLGVLTVFFMIAAGYARDLAYQVHAVILMLVAGGLFLWTLRETDEPVPAPVT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCCCCCCCC
GEYLDGVVRAGVIATAFWGVAGFLVGTFIAFQLAFPVLNFDWSEGFANFGRLRPLHTSAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEECCCEE
IFAFGGNALIATSFYIVQRTSAARLWGGNLAWFVFWGYQLFIVLAATGYLLGGTQSKEYA
EEEECCCEEEEEEEEEEEECCHHEECCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCC
EPEWYIDLWLTVVWVAYLAVFLGTIIRRKERHIYVANWFFLAFIVTVAMLHLVNNLTIPV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEE
SIWGSKSVIVWPGVQDAMVQWWYGHNAVGFFLTAGFLGMMYYFIPKQADRPVYSYKLSII
EEECCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
HFWALIFIYIWAGPHHLHYTALPDWASTLGMVFSIVLWMPSWGGMINGLMTLSGAWDKLR
HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHC
TDPVLRMLVISVGFYGMSTFEGPMMSIRAVNSLSHYTDWTIGHVHSGALGWNGMITFGAL
CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEECEECCCCCCCCHHHHHHH
YYLTPVLWKRERLYSLSLVSWHFWLATIGIVLYAASMWVTGIMEGLMWREVDANGFLVWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEE
FADTVAAKLPMYVMRGLGGVLFLTGSLVMCYNLWMTVRRAPAKEASLSVAVPAE
EHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
>Mature Secondary Structure 
SNYLKLIVLGVLTVFFMIAAGYARDLAYQVHAVILMLVAGGLFLWTLRETDEPVPAPVT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCCCCCCCC
GEYLDGVVRAGVIATAFWGVAGFLVGTFIAFQLAFPVLNFDWSEGFANFGRLRPLHTSAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEECCCEE
IFAFGGNALIATSFYIVQRTSAARLWGGNLAWFVFWGYQLFIVLAATGYLLGGTQSKEYA
EEEECCCEEEEEEEEEEEECCHHEECCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCC
EPEWYIDLWLTVVWVAYLAVFLGTIIRRKERHIYVANWFFLAFIVTVAMLHLVNNLTIPV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEE
SIWGSKSVIVWPGVQDAMVQWWYGHNAVGFFLTAGFLGMMYYFIPKQADRPVYSYKLSII
EEECCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
HFWALIFIYIWAGPHHLHYTALPDWASTLGMVFSIVLWMPSWGGMINGLMTLSGAWDKLR
HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHC
TDPVLRMLVISVGFYGMSTFEGPMMSIRAVNSLSHYTDWTIGHVHSGALGWNGMITFGAL
CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEECEECCCCCCCCHHHHHHH
YYLTPVLWKRERLYSLSLVSWHFWLATIGIVLYAASMWVTGIMEGLMWREVDANGFLVWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEE
FADTVAAKLPMYVMRGLGGVLFLTGSLVMCYNLWMTVRRAPAKEASLSVAVPAE
EHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7891558 [H]