| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yhdF [H]
Identifier: 99082372
GI number: 99082372
Start: 2672639
End: 2673442
Strand: Reverse
Name: yhdF [H]
Synonym: TM1040_2532
Alternate gene names: 99082372
Gene position: 2673442-2672639 (Counterclockwise)
Preceding gene: 99082373
Following gene: 99082371
Centisome position: 83.52
GC content: 59.95
Gene sequence:
>804_bases ATGAGTTTTTCCATCTCTGGCAAGACAGCCATTGTGACTGGCGCGGCCAATGGTATCGGCCTGGCGATTGGTCGGCAGTT CGCCCGTGAAGGTGCAAATGTAATGTTTGTGGATCACGATGAGCCAACGCTCCTGCAAGAGCTGGGCGGTGACGTGGAGG ACAGCAATATCCGCCATTTCGCGGGTGATTTGCGCGAACGCCTGACCATTGCCAACCTGTTGTCAGCGACCATCGACGCG TTTGATCAGGTCGACATTCTGGTCAATGGCGCCCGAAAGGTCGTGCCCAGCGAGCCACTGAACCCCGACGACGAAAGCGT TGAGTTCCTGTTAAAGCAAAACCTCATGTCCACGCTGCGTCTGTCGCAGCATGTGGCCAAACGGATGATCCGTCAGGCTG AGGAGCGTGACGATGAGGGCCCCAATGGCGCCATCATCAACCTGTCGTCCATCGCCGCACGGCGCACCCACCCCGACCTT ATGGGCTATTCGGTGGCCTCGGCGGCGCTCGATCAGATGACGCGCTCTTTGGCGGTTTCGCTTGCGCCGCACCGGATACG GGTGAATTCCATCGCGTTCGGTTCCGTGATGAGCGCATCCATGCAGGCGACGTTGAAGGACAACCGTTCCTTGCGCCAGG ACATTGAAGAGCACACCCCGCTCAATCGGATTGCGCCGCCGACCGAGCTGACCGAGACCGCGCAGTTTCTCGCTTCGGAA GCCTCGGGCTTCATGACCGGGCAGGTACTGACGCTCGACGGCGGGCGTACCCTGCTTGATCCTGTCACAGCGCCGGTGCA TTGA
Upstream 100 bases:
>100_bases GGCTATCGTTTCGCCAGAGTGCGCCACAGACGCGCGTTTCTTCTGACCCCTGGCCCAAGACACAGGCCCAAGGCCTGATG CAAGCAAGGATCCAACCCCC
Downstream 100 bases:
>100_bases GGCGGCAGTCTAAAACTCGATCTGATGAGGGAGGCCGTCATGGCACAGAACACGGCAGAAATGCGTGACGAGAAGGCGCG CGCGGCGGCGTGGTTTCGAG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 267; Mature: 266
Protein sequence:
>267_residues MSFSISGKTAIVTGAANGIGLAIGRQFAREGANVMFVDHDEPTLLQELGGDVEDSNIRHFAGDLRERLTIANLLSATIDA FDQVDILVNGARKVVPSEPLNPDDESVEFLLKQNLMSTLRLSQHVAKRMIRQAEERDDEGPNGAIINLSSIAARRTHPDL MGYSVASAALDQMTRSLAVSLAPHRIRVNSIAFGSVMSASMQATLKDNRSLRQDIEEHTPLNRIAPPTELTETAQFLASE ASGFMTGQVLTLDGGRTLLDPVTAPVH
Sequences:
>Translated_267_residues MSFSISGKTAIVTGAANGIGLAIGRQFAREGANVMFVDHDEPTLLQELGGDVEDSNIRHFAGDLRERLTIANLLSATIDA FDQVDILVNGARKVVPSEPLNPDDESVEFLLKQNLMSTLRLSQHVAKRMIRQAEERDDEGPNGAIINLSSIAARRTHPDL MGYSVASAALDQMTRSLAVSLAPHRIRVNSIAFGSVMSASMQATLKDNRSLRQDIEEHTPLNRIAPPTELTETAQFLASE ASGFMTGQVLTLDGGRTLLDPVTAPVH >Mature_266_residues SFSISGKTAIVTGAANGIGLAIGRQFAREGANVMFVDHDEPTLLQELGGDVEDSNIRHFAGDLRERLTIANLLSATIDAF DQVDILVNGARKVVPSEPLNPDDESVEFLLKQNLMSTLRLSQHVAKRMIRQAEERDDEGPNGAIINLSSIAARRTHPDLM GYSVASAALDQMTRSLAVSLAPHRIRVNSIAFGSVMSASMQATLKDNRSLRQDIEEHTPLNRIAPPTELTETAQFLASEA SGFMTGQVLTLDGGRTLLDPVTAPVH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=267, Percent_Identity=27.7153558052434, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI32483357, Length=258, Percent_Identity=27.906976744186, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI7705925, Length=258, Percent_Identity=29.0697674418605, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI59889578, Length=243, Percent_Identity=30.8641975308642, Blast_Score=88, Evalue=6e-18, Organism=Homo sapiens, GI5031737, Length=262, Percent_Identity=29.7709923664122, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI10190704, Length=259, Percent_Identity=27.027027027027, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=27.4509803921569, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI4758504, Length=265, Percent_Identity=27.9245283018868, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI66933014, Length=262, Percent_Identity=28.6259541984733, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI40254992, Length=257, Percent_Identity=26.0700389105058, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI83715985, Length=262, Percent_Identity=26.3358778625954, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=31.9796954314721, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI87082100, Length=270, Percent_Identity=31.4814814814815, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1787905, Length=259, Percent_Identity=30.1158301158301, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI87082160, Length=258, Percent_Identity=31.0077519379845, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1789208, Length=261, Percent_Identity=29.5019157088123, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1788459, Length=264, Percent_Identity=26.5151515151515, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1787335, Length=259, Percent_Identity=29.3436293436293, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1790717, Length=261, Percent_Identity=27.2030651340996, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789378, Length=260, Percent_Identity=28.0769230769231, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786812, Length=264, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI2367175, Length=253, Percent_Identity=26.0869565217391, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787545, Length=266, Percent_Identity=24.812030075188, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789057, Length=268, Percent_Identity=23.8805970149254, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI2367365, Length=252, Percent_Identity=25.3968253968254, Blast_Score=66, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193204405, Length=271, Percent_Identity=32.8413284132841, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17559104, Length=269, Percent_Identity=33.8289962825279, Blast_Score=117, Evalue=5e-27, Organism=Caenorhabditis elegans, GI17560332, Length=276, Percent_Identity=32.2463768115942, Blast_Score=114, Evalue=5e-26, Organism=Caenorhabditis elegans, GI17531453, Length=276, Percent_Identity=30.7971014492754, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17560150, Length=268, Percent_Identity=32.089552238806, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17562906, Length=271, Percent_Identity=29.8892988929889, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17562908, Length=271, Percent_Identity=29.520295202952, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17562990, Length=269, Percent_Identity=31.2267657992565, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17562904, Length=272, Percent_Identity=29.4117647058824, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI17562910, Length=272, Percent_Identity=30.1470588235294, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI71994604, Length=260, Percent_Identity=27.6923076923077, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17538480, Length=276, Percent_Identity=29.7101449275362, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI72000259, Length=276, Percent_Identity=30.4347826086957, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI71994600, Length=261, Percent_Identity=26.8199233716475, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17560220, Length=271, Percent_Identity=29.8892988929889, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17551412, Length=282, Percent_Identity=28.0141843971631, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17561402, Length=256, Percent_Identity=28.90625, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17538486, Length=275, Percent_Identity=30.1818181818182, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI25147288, Length=261, Percent_Identity=27.5862068965517, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560676, Length=257, Percent_Identity=26.4591439688716, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17536025, Length=271, Percent_Identity=25.0922509225092, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17544670, Length=278, Percent_Identity=28.4172661870504, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17565030, Length=279, Percent_Identity=29.0322580645161, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17563726, Length=269, Percent_Identity=26.0223048327138, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI115534694, Length=258, Percent_Identity=27.5193798449612, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI212645366, Length=125, Percent_Identity=33.6, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=26.3779527559055, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17508651, Length=265, Percent_Identity=27.5471698113208, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17536651, Length=276, Percent_Identity=25.7246376811594, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17561272, Length=264, Percent_Identity=25.3787878787879, Blast_Score=68, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=262, Percent_Identity=22.9007633587786, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI23397609, Length=271, Percent_Identity=30.2583025830258, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI24644337, Length=263, Percent_Identity=31.9391634980989, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI21357041, Length=267, Percent_Identity=28.4644194756554, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI24639444, Length=255, Percent_Identity=30.5882352941176, Blast_Score=98, Evalue=7e-21, Organism=Drosophila melanogaster, GI21355319, Length=257, Percent_Identity=29.5719844357977, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI28571526, Length=263, Percent_Identity=26.2357414448669, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI24644339, Length=266, Percent_Identity=25.5639097744361, Blast_Score=94, Evalue=8e-20, Organism=Drosophila melanogaster, GI24643142, Length=266, Percent_Identity=31.5789473684211, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI161076933, Length=186, Percent_Identity=27.9569892473118, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24584748, Length=186, Percent_Identity=27.9569892473118, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI17737361, Length=260, Percent_Identity=25.7692307692308, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28837; Mature: 28706
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFSISGKTAIVTGAANGIGLAIGRQFAREGANVMFVDHDEPTLLQELGGDVEDSNIRHF CCEECCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCHHHH AGDLRERLTIANLLSATIDAFDQVDILVNGARKVVPSEPLNPDDESVEFLLKQNLMSTLR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHH LSQHVAKRMIRQAEERDDEGPNGAIINLSSIAARRTHPDLMGYSVASAALDQMTRSLAVS HHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH LAPHRIRVNSIAFGSVMSASMQATLKDNRSLRQDIEEHTPLNRIAPPTELTETAQFLASE CCCCEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH ASGFMTGQVLTLDGGRTLLDPVTAPVH CCCCEECEEEEECCCCHHHCCCCCCCC >Mature Secondary Structure SFSISGKTAIVTGAANGIGLAIGRQFAREGANVMFVDHDEPTLLQELGGDVEDSNIRHF CEECCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCHHHH AGDLRERLTIANLLSATIDAFDQVDILVNGARKVVPSEPLNPDDESVEFLLKQNLMSTLR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHH LSQHVAKRMIRQAEERDDEGPNGAIINLSSIAARRTHPDLMGYSVASAALDQMTRSLAVS HHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH LAPHRIRVNSIAFGSVMSASMQATLKDNRSLRQDIEEHTPLNRIAPPTELTETAQFLASE CCCCEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH ASGFMTGQVLTLDGGRTLLDPVTAPVH CCCCEECEEEEECCCCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]