| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is pyk [H]
Identifier: 99082356
GI number: 99082356
Start: 2655276
End: 2656721
Strand: Reverse
Name: pyk [H]
Synonym: TM1040_2516
Alternate gene names: 99082356
Gene position: 2656721-2655276 (Counterclockwise)
Preceding gene: 99082357
Following gene: 99082355
Centisome position: 83.0
GC content: 60.17
Gene sequence:
>1446_bases ATGAAACGCACGCGCAATGTCAAAATCGTGGCCACGCTCGGTCCTGCCTCCGAGACCTACGAGACCATTCGCGCTCTGCA TGAGGCAGGTGCGGATGTGTTCCGCCTGAATATGTCCCACGGCAGCCACGATGAAATCGCGGTGAAGCACAAGATCATCC GCCAGGTCGAAGAAGACCTGGACTCCACCATCGCCATTCTGGCCGACCTGCAGGGACCTAAACTCCGCGTCGGCGTGTTT GCGAATGGTGCCGAGGAACTCGAAGAAGGGGCAAATTTCCGCCTTGATCTCGATCCGGCCGAGGGCGATCTGTCGCGCGT TTGCCTGCCGCACCCCGAGATTTTTCAGGCGCTGGAGCCCGGTGCTTCGCTTCTGGTCAACGATGGCAAGATCCGTCTCA AGGTGGAGGATTGCGGCGAGGATTATGCCAATTGCGTCGTGACCACCGGTGGCACCATCTCGAACCGCAAGGGTGTGAAT GTTCCCGATGTGATCCTGCCGTTGGCGGCACTTTCGGAAAAAGACCGTGCGGATCTGGAGTTTGTCTGCGAGCTCGGTGT CGACTGGCTGGCGCTGTCCTTCGTACAACGCGCAAAAGACGTCTTTGAGGCCCGCGCTCTGGCTGATGGGCGCGCCGCAA TCCTCTCCAAGATCGAAAAGCCCGCCGCCGTCGACAACTTTGCAGAAATTCTGGATGCCTCCGATGGCATCATGGTAGCG CGCGGAGATCTTGGCGTTGAGCTGCCGGTTTCGCATGTGCCGCCGATCCAGAAACGCCTGGTCCGCAAGAGCCGCGCGGC CGCAAAGCCCGTGATTGTGGCGACACAGATGCTCGAGAGCATGATCGAGAGCCCGATGCCCACCCGTGCAGAGGTCTCTG ACGTGGCAACCGCGATCTACGAGGGCACCGACGCTATCATGCTCAGCGCGGAGTCTGCAGCGGGTCAGTACCCTATCGAA GCGGTTCAGACGATGGACAAGGTCGCAACCGAAGTGGAGCAGGACCCGACATATCGCGACATTATCGCCGCTTCCCGCTC TTCCAAGGGTGACACCATCGCGGATGGCATCGTGGCAGCTGCGCGCGAGATTGCGGAGAAGACCGAGATCAAGGCGATCT GCTGTTTTACACAGTCCGGAACCACCGCGCTTTTGACTGCGCGCGAGCGGCCCTATGTGCCGATCCTCGCGCTGACACCG CTGGCAAAAACCGCCCGCCGCCTTTGCCTGACCTGGGGTTGCAACTGTGTGGTTACGCCCAAGGTGGATCGCTTCAAGGG GGCTGTGGTATCTGCTGCGCGTGCCGCGCGTTCGGGTGGCTTTGCCTCTGAGACGGATCAGGTTGTCGTCACTGCCGGTG TGCCGTTCAACGTACCGGGCACCACCAATATCTTGCGCATTGCGCCTTGTGATGAACGCCTGATTTACAATACCGACCCG GAATAA
Upstream 100 bases:
>100_bases ACGGTCTGTGTGAAGCTTTTGGTTGCATAGCGCCCTACCACGTAAATTCGTTATCAAGATTTGCCGTTCAAAAATGCGGC TGCCGAAGGATGGAGATCCC
Downstream 100 bases:
>100_bases TACCCTTTCCCCCGTATGTATTAGGGGGTGAGGCGTATGGACACGGACCTGTTATTGGTGACTGGGCTGATACTCGCCTG GCTTGGTGTGCCTGCCTTCT
Product: pyruvate kinase
Products: NA
Alternate protein names: PK [H]
Number of amino acids: Translated: 481; Mature: 481
Protein sequence:
>481_residues MKRTRNVKIVATLGPASETYETIRALHEAGADVFRLNMSHGSHDEIAVKHKIIRQVEEDLDSTIAILADLQGPKLRVGVF ANGAEELEEGANFRLDLDPAEGDLSRVCLPHPEIFQALEPGASLLVNDGKIRLKVEDCGEDYANCVVTTGGTISNRKGVN VPDVILPLAALSEKDRADLEFVCELGVDWLALSFVQRAKDVFEARALADGRAAILSKIEKPAAVDNFAEILDASDGIMVA RGDLGVELPVSHVPPIQKRLVRKSRAAAKPVIVATQMLESMIESPMPTRAEVSDVATAIYEGTDAIMLSAESAAGQYPIE AVQTMDKVATEVEQDPTYRDIIAASRSSKGDTIADGIVAAAREIAEKTEIKAICCFTQSGTTALLTARERPYVPILALTP LAKTARRLCLTWGCNCVVTPKVDRFKGAVVSAARAARSGGFASETDQVVVTAGVPFNVPGTTNILRIAPCDERLIYNTDP E
Sequences:
>Translated_481_residues MKRTRNVKIVATLGPASETYETIRALHEAGADVFRLNMSHGSHDEIAVKHKIIRQVEEDLDSTIAILADLQGPKLRVGVF ANGAEELEEGANFRLDLDPAEGDLSRVCLPHPEIFQALEPGASLLVNDGKIRLKVEDCGEDYANCVVTTGGTISNRKGVN VPDVILPLAALSEKDRADLEFVCELGVDWLALSFVQRAKDVFEARALADGRAAILSKIEKPAAVDNFAEILDASDGIMVA RGDLGVELPVSHVPPIQKRLVRKSRAAAKPVIVATQMLESMIESPMPTRAEVSDVATAIYEGTDAIMLSAESAAGQYPIE AVQTMDKVATEVEQDPTYRDIIAASRSSKGDTIADGIVAAAREIAEKTEIKAICCFTQSGTTALLTARERPYVPILALTP LAKTARRLCLTWGCNCVVTPKVDRFKGAVVSAARAARSGGFASETDQVVVTAGVPFNVPGTTNILRIAPCDERLIYNTDP E >Mature_481_residues MKRTRNVKIVATLGPASETYETIRALHEAGADVFRLNMSHGSHDEIAVKHKIIRQVEEDLDSTIAILADLQGPKLRVGVF ANGAEELEEGANFRLDLDPAEGDLSRVCLPHPEIFQALEPGASLLVNDGKIRLKVEDCGEDYANCVVTTGGTISNRKGVN VPDVILPLAALSEKDRADLEFVCELGVDWLALSFVQRAKDVFEARALADGRAAILSKIEKPAAVDNFAEILDASDGIMVA RGDLGVELPVSHVPPIQKRLVRKSRAAAKPVIVATQMLESMIESPMPTRAEVSDVATAIYEGTDAIMLSAESAAGQYPIE AVQTMDKVATEVEQDPTYRDIIAASRSSKGDTIADGIVAAAREIAEKTEIKAICCFTQSGTTALLTARERPYVPILALTP LAKTARRLCLTWGCNCVVTPKVDRFKGAVVSAARAARSGGFASETDQVVVTAGVPFNVPGTTNILRIAPCDERLIYNTDP E
Specific function: Glycolysis; final step. [C]
COG id: COG0469
COG function: function code G; Pyruvate kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyruvate kinase family [H]
Homologues:
Organism=Homo sapiens, GI33286422, Length=490, Percent_Identity=37.9591836734694, Blast_Score=286, Evalue=3e-77, Organism=Homo sapiens, GI33286420, Length=490, Percent_Identity=37.9591836734694, Blast_Score=286, Evalue=3e-77, Organism=Homo sapiens, GI33286418, Length=490, Percent_Identity=38.1632653061225, Blast_Score=278, Evalue=6e-75, Organism=Homo sapiens, GI10835121, Length=492, Percent_Identity=37.8048780487805, Blast_Score=272, Evalue=5e-73, Organism=Homo sapiens, GI32967597, Length=492, Percent_Identity=37.8048780487805, Blast_Score=271, Evalue=7e-73, Organism=Homo sapiens, GI310128732, Length=287, Percent_Identity=39.0243902439024, Blast_Score=184, Evalue=2e-46, Organism=Homo sapiens, GI310128730, Length=287, Percent_Identity=39.0243902439024, Blast_Score=184, Evalue=2e-46, Organism=Homo sapiens, GI310128736, Length=235, Percent_Identity=35.3191489361702, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI310128734, Length=235, Percent_Identity=35.3191489361702, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI310128738, Length=212, Percent_Identity=34.4339622641509, Blast_Score=112, Evalue=8e-25, Organism=Escherichia coli, GI1788160, Length=479, Percent_Identity=40.0835073068894, Blast_Score=292, Evalue=4e-80, Organism=Escherichia coli, GI1787965, Length=471, Percent_Identity=39.2781316348195, Blast_Score=280, Evalue=1e-76, Organism=Caenorhabditis elegans, GI17544584, Length=484, Percent_Identity=37.1900826446281, Blast_Score=292, Evalue=3e-79, Organism=Caenorhabditis elegans, GI17506829, Length=488, Percent_Identity=37.5, Blast_Score=252, Evalue=3e-67, Organism=Caenorhabditis elegans, GI71984413, Length=488, Percent_Identity=37.5, Blast_Score=252, Evalue=4e-67, Organism=Caenorhabditis elegans, GI71984406, Length=488, Percent_Identity=37.5, Blast_Score=252, Evalue=4e-67, Organism=Caenorhabditis elegans, GI17506831, Length=488, Percent_Identity=37.5, Blast_Score=251, Evalue=5e-67, Organism=Saccharomyces cerevisiae, GI6319279, Length=426, Percent_Identity=38.0281690140845, Blast_Score=237, Evalue=3e-63, Organism=Saccharomyces cerevisiae, GI6324923, Length=496, Percent_Identity=34.4758064516129, Blast_Score=229, Evalue=9e-61, Organism=Drosophila melanogaster, GI24648964, Length=486, Percent_Identity=36.6255144032922, Blast_Score=274, Evalue=1e-73, Organism=Drosophila melanogaster, GI28571814, Length=486, Percent_Identity=36.6255144032922, Blast_Score=273, Evalue=1e-73, Organism=Drosophila melanogaster, GI24581235, Length=486, Percent_Identity=33.5390946502058, Blast_Score=240, Evalue=1e-63, Organism=Drosophila melanogaster, GI24648966, Length=386, Percent_Identity=38.0829015544041, Blast_Score=228, Evalue=7e-60, Organism=Drosophila melanogaster, GI24646914, Length=259, Percent_Identity=38.6100386100386, Blast_Score=153, Evalue=2e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001697 - InterPro: IPR015813 - InterPro: IPR011037 - InterPro: IPR015794 - InterPro: IPR018209 - InterPro: IPR015793 - InterPro: IPR015795 - InterPro: IPR015806 [H]
Pfam domain/function: PF00224 PK; PF02887 PK_C [H]
EC number: =2.7.1.40 [H]
Molecular weight: Translated: 51626; Mature: 51626
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: PS00144 ASN_GLN_ASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRTRNVKIVATLGPASETYETIRALHEAGADVFRLNMSHGSHDEIAVKHKIIRQVEEDL CCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH DSTIAILADLQGPKLRVGVFANGAEELEEGANFRLDLDPAEGDLSRVCLPHPEIFQALEP HHHEEHHEECCCCEEEEEEECCCHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCC GASLLVNDGKIRLKVEDCGEDYANCVVTTGGTISNRKGVNVPDVILPLAALSEKDRADLE CCEEEEECCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHH FVCELGVDWLALSFVQRAKDVFEARALADGRAAILSKIEKPAAVDNFAEILDASDGIMVA HHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEE RGDLGVELPVSHVPPIQKRLVRKSRAAAKPVIVATQMLESMIESPMPTRAEVSDVATAIY ECCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH EGTDAIMLSAESAAGQYPIEAVQTMDKVATEVEQDPTYRDIIAASRSSKGDTIADGIVAA CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHH AREIAEKTEIKAICCFTQSGTTALLTARERPYVPILALTPLAKTARRLCLTWGCNCVVTP HHHHHHHHCEEEEEEEECCCCEEEEEECCCCCEEEEEECHHHHHHHHHHHHCCCCEEECC KVDRFKGAVVSAARAARSGGFASETDQVVVTAGVPFNVPGTTNILRIAPCDERLIYNTDP CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCEEECCCC E C >Mature Secondary Structure MKRTRNVKIVATLGPASETYETIRALHEAGADVFRLNMSHGSHDEIAVKHKIIRQVEEDL CCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH DSTIAILADLQGPKLRVGVFANGAEELEEGANFRLDLDPAEGDLSRVCLPHPEIFQALEP HHHEEHHEECCCCEEEEEEECCCHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCC GASLLVNDGKIRLKVEDCGEDYANCVVTTGGTISNRKGVNVPDVILPLAALSEKDRADLE CCEEEEECCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHH FVCELGVDWLALSFVQRAKDVFEARALADGRAAILSKIEKPAAVDNFAEILDASDGIMVA HHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEE RGDLGVELPVSHVPPIQKRLVRKSRAAAKPVIVATQMLESMIESPMPTRAEVSDVATAIY ECCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH EGTDAIMLSAESAAGQYPIEAVQTMDKVATEVEQDPTYRDIIAASRSSKGDTIADGIVAA CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHH AREIAEKTEIKAICCFTQSGTTALLTARERPYVPILALTPLAKTARRLCLTWGCNCVVTP HHHHHHHHCEEEEEEEECCCCEEEEEECCCCCEEEEEECHHHHHHHHHHHHCCCCEEECC KVDRFKGAVVSAARAARSGGFASETDQVVVTAGVPFNVPGTTNILRIAPCDERLIYNTDP CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCEEECCCC E C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA