| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is fhs
Identifier: 99082198
GI number: 99082198
Start: 2478640
End: 2480316
Strand: Reverse
Name: fhs
Synonym: TM1040_2358
Alternate gene names: 99082198
Gene position: 2480316-2478640 (Counterclockwise)
Preceding gene: 99082199
Following gene: 99082197
Centisome position: 77.49
GC content: 61.06
Gene sequence:
>1677_bases ATGAGCTATAAGAGTGACATTGAGATCGCCCGCGCGGCGAACAAGCTCCCGATCCAGGAGATCGGCGCCAAACTGGGCAT GAAAAACGACGACCTGCTGCCCTATGGCCACGACAAGGCGAAGGTGAGCCAAGAGTTCATCAACTCCGTGCAGGGCAATG AAGACGGCAAGCTGGTGCTGGTGACCGCGATCAACCCGACCCCGGCGGGTGAGGGCAAGACCACCACCACCGTTGGTCTG GGCGATGGTCTGAACCGTATCGGCAAAAATGCGATGATCTGTATCCGCGAAGCGTCCCTCGGGCCGAACTTCGGCATGAA GGGTGGCGCCGCCGGTGGCGGCATGGCGCAGGTTGTGCCGATGGAGGAAATGAACCTCCACTTCACAGGCGACTTCCATG CGATCACCTCGGCGCACTCGTTGCTGTCGGCCATGATCGACAACCACATCTACTGGGGCAACGAGCAGGAAATCGACATC CGCCGCGTTGCATGGCGTCGTGTGGTCGACATGAACGACCGCGCCCTGCGCCAGATCACGGCGTCGCTGGGTGGGGTGTC CAACGGCTTCCCGCGCGAAACCGGTTTTGACATCACCGTGGCTTCCGAGGTCATGGCGATCCTCTGCCTTGCCAACGACC TGAAGGACCTGGAAAAGCGTCTCGGCGACATCATCGTGGCCTATCGCCGCGACAAGACCCCGGTTTACTGCCGCGACATC AAGGCCGAAGGCGCGATGACCGTTCTCCTGAAGGACGCCATGCAGCCCAACCTCGTTCAGACCCTGGAAAACAACCCGGC GTTTGTACACGGTGGCCCGTTTGCGAACATCGCACATGGCTGTAACTCCGTGATCGCAACCAAGACCGCGCTCAAAGTGG CGGATTACGTTGTCACAGAAGCAGGCTTTGGGGCCGACCTCGGCGCCGAGAAGTTCATGAACATCAAATGCCGCAAGGCC GGCATCGCCCCCTCTGCGGTGGTGGTCGTTGCGACCGTGCGCGCCATGAAGATGAACGGTGGCGTGGCCAAGGCGGATCT GGGCGCGGAAAACGTCGAGGCGGTCAAGAACGGCTGTGCAAACCTCGGTCGTCACATCGAGAACGTCAAATCCTTTGGCG TGCCTGCGGTCGTGGCGATCAACCACTTCGTCACCGACACCGATGCGGAGATCAATGCGGTCAAGGAATATGTCGCCTCT CACGGCGTCGAGGCGATCCTGTCGCGCCACTGGGAGCTGGGCTCCGAGGGCTCCGCGCCGTTGGCTGAGAAGGTGGTCGA GCTTGTTGAGGGTGGCGGTGCAAACTTCGGTCCGCTCTATCCCGATGAGATGCCGCTGTTTGAGAAGATCGAAACCATCG CCAAGCGCATCTATCGCGCTGACGAGGTTCTGGCCGATGCCAAGATCCGCAACCAGCTGAAAGAGTGGGAAGAAGCGGGC TATGGCCATCTGCCGGTCTGCATGGCGAAGACCCAGTATTCGTTCTCGACCGATCCGAACCTGCGCGGTGCGCCCACCGG CCACTCGGTTCCGGTTCGCGAAGTGCGCCTCTCGGCGGGTGCGGGCTTTATCGTGGTGGTTTGCGGTGAGATCATGACCA TGCCGGGTCTGCCACGCACCCCGGCGGCGGAAAGCATCTGCCTCAATGAAGAGGGCCTGATCGAAGGCTTGTTCTAA
Upstream 100 bases:
>100_bases CGGAAACCAATGGCGCGGTTTGTTTCAGACTCGCTAATCGTAGAGGCATACTCGGTGTCCGCCACCGGGCTCTGCAACGC GACATTTAGGAATACCGGCT
Downstream 100 bases:
>100_bases GGCACGAAATCGGCAATCTGCGGCCCGGGGCATATGCCTCGGGCCGTAGGAGTTTTGATAGAGAGATGACCCACCGCAAA CCGCCGCAAGACTGTGTAGA
Product: formate--tetrahydrofolate ligase
Products: NA
Alternate protein names: Formyltetrahydrofolate synthetase; FHS; FTHFS
Number of amino acids: Translated: 558; Mature: 557
Protein sequence:
>558_residues MSYKSDIEIARAANKLPIQEIGAKLGMKNDDLLPYGHDKAKVSQEFINSVQGNEDGKLVLVTAINPTPAGEGKTTTTVGL GDGLNRIGKNAMICIREASLGPNFGMKGGAAGGGMAQVVPMEEMNLHFTGDFHAITSAHSLLSAMIDNHIYWGNEQEIDI RRVAWRRVVDMNDRALRQITASLGGVSNGFPRETGFDITVASEVMAILCLANDLKDLEKRLGDIIVAYRRDKTPVYCRDI KAEGAMTVLLKDAMQPNLVQTLENNPAFVHGGPFANIAHGCNSVIATKTALKVADYVVTEAGFGADLGAEKFMNIKCRKA GIAPSAVVVVATVRAMKMNGGVAKADLGAENVEAVKNGCANLGRHIENVKSFGVPAVVAINHFVTDTDAEINAVKEYVAS HGVEAILSRHWELGSEGSAPLAEKVVELVEGGGANFGPLYPDEMPLFEKIETIAKRIYRADEVLADAKIRNQLKEWEEAG YGHLPVCMAKTQYSFSTDPNLRGAPTGHSVPVREVRLSAGAGFIVVVCGEIMTMPGLPRTPAAESICLNEEGLIEGLF
Sequences:
>Translated_558_residues MSYKSDIEIARAANKLPIQEIGAKLGMKNDDLLPYGHDKAKVSQEFINSVQGNEDGKLVLVTAINPTPAGEGKTTTTVGL GDGLNRIGKNAMICIREASLGPNFGMKGGAAGGGMAQVVPMEEMNLHFTGDFHAITSAHSLLSAMIDNHIYWGNEQEIDI RRVAWRRVVDMNDRALRQITASLGGVSNGFPRETGFDITVASEVMAILCLANDLKDLEKRLGDIIVAYRRDKTPVYCRDI KAEGAMTVLLKDAMQPNLVQTLENNPAFVHGGPFANIAHGCNSVIATKTALKVADYVVTEAGFGADLGAEKFMNIKCRKA GIAPSAVVVVATVRAMKMNGGVAKADLGAENVEAVKNGCANLGRHIENVKSFGVPAVVAINHFVTDTDAEINAVKEYVAS HGVEAILSRHWELGSEGSAPLAEKVVELVEGGGANFGPLYPDEMPLFEKIETIAKRIYRADEVLADAKIRNQLKEWEEAG YGHLPVCMAKTQYSFSTDPNLRGAPTGHSVPVREVRLSAGAGFIVVVCGEIMTMPGLPRTPAAESICLNEEGLIEGLF >Mature_557_residues SYKSDIEIARAANKLPIQEIGAKLGMKNDDLLPYGHDKAKVSQEFINSVQGNEDGKLVLVTAINPTPAGEGKTTTTVGLG DGLNRIGKNAMICIREASLGPNFGMKGGAAGGGMAQVVPMEEMNLHFTGDFHAITSAHSLLSAMIDNHIYWGNEQEIDIR RVAWRRVVDMNDRALRQITASLGGVSNGFPRETGFDITVASEVMAILCLANDLKDLEKRLGDIIVAYRRDKTPVYCRDIK AEGAMTVLLKDAMQPNLVQTLENNPAFVHGGPFANIAHGCNSVIATKTALKVADYVVTEAGFGADLGAEKFMNIKCRKAG IAPSAVVVVATVRAMKMNGGVAKADLGAENVEAVKNGCANLGRHIENVKSFGVPAVVAINHFVTDTDAEINAVKEYVASH GVEAILSRHWELGSEGSAPLAEKVVELVEGGGANFGPLYPDEMPLFEKIETIAKRIYRADEVLADAKIRNQLKEWEEAGY GHLPVCMAKTQYSFSTDPNLRGAPTGHSVPVREVRLSAGAGFIVVVCGEIMTMPGLPRTPAAESICLNEEGLIEGLF
Specific function: Unknown
COG id: COG2759
COG function: function code F; Formyltetrahydrofolate synthetase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the formate--tetrahydrofolate ligase family
Homologues:
Organism=Homo sapiens, GI222136639, Length=619, Percent_Identity=42.0032310177706, Blast_Score=458, Evalue=1e-129, Organism=Homo sapiens, GI36796743, Length=619, Percent_Identity=42.81098546042, Blast_Score=454, Evalue=1e-128, Organism=Homo sapiens, GI310124614, Length=86, Percent_Identity=37.2093023255814, Blast_Score=74, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17568737, Length=622, Percent_Identity=43.5691318327974, Blast_Score=469, Evalue=1e-132, Organism=Caenorhabditis elegans, GI17568739, Length=622, Percent_Identity=43.5691318327974, Blast_Score=469, Evalue=1e-132, Organism=Saccharomyces cerevisiae, GI6321643, Length=628, Percent_Identity=42.1974522292994, Blast_Score=453, Evalue=1e-128, Organism=Saccharomyces cerevisiae, GI6319558, Length=631, Percent_Identity=41.0459587955626, Blast_Score=446, Evalue=1e-126, Organism=Drosophila melanogaster, GI62472483, Length=619, Percent_Identity=43.4571890145396, Blast_Score=463, Evalue=1e-130, Organism=Drosophila melanogaster, GI45551871, Length=619, Percent_Identity=43.4571890145396, Blast_Score=463, Evalue=1e-130, Organism=Drosophila melanogaster, GI24645718, Length=619, Percent_Identity=43.4571890145396, Blast_Score=463, Evalue=1e-130, Organism=Drosophila melanogaster, GI17137370, Length=619, Percent_Identity=43.4571890145396, Blast_Score=463, Evalue=1e-130,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): FTHS_SILST (Q1GE26)
Other databases:
- EMBL: CP000377 - RefSeq: YP_614352.1 - ProteinModelPortal: Q1GE26 - SMR: Q1GE26 - STRING: Q1GE26 - GeneID: 4076477 - GenomeReviews: CP000377_GR - KEGG: sit:TM1040_2358 - NMPDR: fig|292414.1.peg.918 - eggNOG: COG2759 - HOGENOM: HBG677721 - OMA: EIMAVLC - PhylomeDB: Q1GE26 - ProtClustDB: PRK13505 - BioCyc: SSP292414:TM1040_2358-MONOMER - HAMAP: MF_01543 - InterPro: IPR000559 - InterPro: IPR020628
Pfam domain/function: PF01268 FTHFS
EC number: =6.3.4.3
Molecular weight: Translated: 59752; Mature: 59621
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: PS00721 FTHFS_1; PS00722 FTHFS_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYKSDIEIARAANKLPIQEIGAKLGMKNDDLLPYGHDKAKVSQEFINSVQGNEDGKLVL CCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE VTAINPTPAGEGKTTTTVGLGDGLNRIGKNAMICIREASLGPNFGMKGGAAGGGMAQVVP EEEECCCCCCCCCCEEEEECCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEE MEEMNLHFTGDFHAITSAHSLLSAMIDNHIYWGNEQEIDIRRVAWRRVVDMNDRALRQIT HHHCCEEECCCHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHCCCHHHHHHHH ASLGGVSNGFPRETGFDITVASEVMAILCLANDLKDLEKRLGDIIVAYRRDKTPVYCRDI HHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEC KAEGAMTVLLKDAMQPNLVQTLENNPAFVHGGPFANIAHGCNSVIATKTALKVADYVVTE CCCCCEEHEEHHHCCCHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHC AGFGADLGAEKFMNIKCRKAGIAPSAVVVVATVRAMKMNGGVAKADLGAENVEAVKNGCA CCCCCCCCHHHHCCCEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHH NLGRHIENVKSFGVPAVVAINHFVTDTDAEINAVKEYVASHGVEAILSRHWELGSEGSAP HHHHHHHHHHHCCCCEEEEEHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCH LAEKVVELVEGGGANFGPLYPDEMPLFEKIETIAKRIYRADEVLADAKIRNQLKEWEEAG HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC YGHLPVCMAKTQYSFSTDPNLRGAPTGHSVPVREVRLSAGAGFIVVVCGEIMTMPGLPRT CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHEEECCCCCEEEEEEHHHHHCCCCCCC PAAESICLNEEGLIEGLF CCCCCEECCCCCCCCCCC >Mature Secondary Structure SYKSDIEIARAANKLPIQEIGAKLGMKNDDLLPYGHDKAKVSQEFINSVQGNEDGKLVL CCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE VTAINPTPAGEGKTTTTVGLGDGLNRIGKNAMICIREASLGPNFGMKGGAAGGGMAQVVP EEEECCCCCCCCCCEEEEECCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEE MEEMNLHFTGDFHAITSAHSLLSAMIDNHIYWGNEQEIDIRRVAWRRVVDMNDRALRQIT HHHCCEEECCCHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHCCCHHHHHHHH ASLGGVSNGFPRETGFDITVASEVMAILCLANDLKDLEKRLGDIIVAYRRDKTPVYCRDI HHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEC KAEGAMTVLLKDAMQPNLVQTLENNPAFVHGGPFANIAHGCNSVIATKTALKVADYVVTE CCCCCEEHEEHHHCCCHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHC AGFGADLGAEKFMNIKCRKAGIAPSAVVVVATVRAMKMNGGVAKADLGAENVEAVKNGCA CCCCCCCCHHHHCCCEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHH NLGRHIENVKSFGVPAVVAINHFVTDTDAEINAVKEYVASHGVEAILSRHWELGSEGSAP HHHHHHHHHHHCCCCEEEEEHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCH LAEKVVELVEGGGANFGPLYPDEMPLFEKIETIAKRIYRADEVLADAKIRNQLKEWEEAG HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC YGHLPVCMAKTQYSFSTDPNLRGAPTGHSVPVREVRLSAGAGFIVVVCGEIMTMPGLPRT CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHEEECCCCCEEEEEEHHHHHCCCCCCC PAAESICLNEEGLIEGLF CCCCCEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA