Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082043

Identifier: 99082043

GI number: 99082043

Start: 2313438

End: 2314466

Strand: Direct

Name: 99082043

Synonym: TM1040_2203

Alternate gene names: NA

Gene position: 2313438-2314466 (Clockwise)

Preceding gene: 99082042

Following gene: 99082044

Centisome position: 72.27

GC content: 63.56

Gene sequence:

>1029_bases
ATGCCCCTCTTATACCGCCTCACCGCCACCGCCTGCACCGTTGCCTGCACCGTCTTGGCACTTTCGAGCGCCGCCCGCGC
GGACGCACTTGCAGAGGCGGTGATCGATCAGCATATCCTGCCGACCTACGCCCAGCTCGCGTCCGAGAGCGCCGAGTTTG
CAACCCTCGCCCAGAGCGACTGCGCCCCCACCTCAGAGGCTGTGCGCAATGCCTGGGGAGCGGCCTTTGACGCCTGGGTC
GCTGCGAGTCATCTGCGCTTTGGCCCCTCAGAGGTGGACAATCGGGCCTTTGCCATCGCCTTTTGGCCCGACAGCCGCTC
CAAGACCCCCAAAGCGCTGCGCAGTCTGTTGACCAACCGCAGCCCGGTGGTGGACACGCCCGAGGATTTTGCCACCGCTT
CGGTCGCTGTGCGCGGGTTCTACGCGCTCGAATACCTCTTTTTTGATCCGGCTTACGCGGATCTCGGCGATCCGGACTAT
GCCTGCGCATTTGTTCAAGCGGTTGCACGGGACCTTGCGCGAAACAGCGCCGCTATTCTGGATGACTGGGAGCAGGACTA
CGCCGATCAATTGCGCACCCCGGCAGCGCGCTACCGCAGCGAGACCGAAGCGCATCAGGAGCTGTTCAAGGCGCTGACCA
CCGGGCTTGAGATCCTCGCCGACATGCGGATCGGGCGCCCGCTTGGTACTTTTGATGCGCCAAAGCCGAACCGCGCCGAG
GCCCGTCGCTCTGGCCGCTCCCTGCGCCATATCGAGATCCAACTCCAGAGCCTGCGGGAACTGGCCCTGCTCTTGTCGGC
CAATGACGGGGCACTGACCGAGCATCTGACCCAGGTGTTTGACAAGGCCGACCGCCACGCAGACCAGCTCTCGGACGATC
CAAGCCTTGCGGGCATCACAGATCCGCAAAAGCGCTTTCTGCTGGAGACACTGCAACAGGACGTCTTTGAGATCAAAGAA
ATCGCCCTGCGTGATCTCGGCCCCAAACTGGGTGTCGAGGCCGGCTTCAACGCGCTGGATGGCGACTGA

Upstream 100 bases:

>100_bases
TCCTCTGGCACGGCGGCGAAGCACAAGCCGCCCGCGACCGGGTGGTGGCCCTGCCCCCTGCCGACCGCGCGGCGCTTATT
TCATTCCTGGAGTCCCTTTG

Downstream 100 bases:

>100_bases
CCACGTGTCGCATTGCACTGATACAGGAGTTTCAACATGCCCTCTCGACGCGGCTTTCTTGCAGGTCTGTTGGCCAGCAG
CGTGACGCCAACCGCCACAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MPLLYRLTATACTVACTVLALSSAARADALAEAVIDQHILPTYAQLASESAEFATLAQSDCAPTSEAVRNAWGAAFDAWV
AASHLRFGPSEVDNRAFAIAFWPDSRSKTPKALRSLLTNRSPVVDTPEDFATASVAVRGFYALEYLFFDPAYADLGDPDY
ACAFVQAVARDLARNSAAILDDWEQDYADQLRTPAARYRSETEAHQELFKALTTGLEILADMRIGRPLGTFDAPKPNRAE
ARRSGRSLRHIEIQLQSLRELALLLSANDGALTEHLTQVFDKADRHADQLSDDPSLAGITDPQKRFLLETLQQDVFEIKE
IALRDLGPKLGVEAGFNALDGD

Sequences:

>Translated_342_residues
MPLLYRLTATACTVACTVLALSSAARADALAEAVIDQHILPTYAQLASESAEFATLAQSDCAPTSEAVRNAWGAAFDAWV
AASHLRFGPSEVDNRAFAIAFWPDSRSKTPKALRSLLTNRSPVVDTPEDFATASVAVRGFYALEYLFFDPAYADLGDPDY
ACAFVQAVARDLARNSAAILDDWEQDYADQLRTPAARYRSETEAHQELFKALTTGLEILADMRIGRPLGTFDAPKPNRAE
ARRSGRSLRHIEIQLQSLRELALLLSANDGALTEHLTQVFDKADRHADQLSDDPSLAGITDPQKRFLLETLQQDVFEIKE
IALRDLGPKLGVEAGFNALDGD
>Mature_341_residues
PLLYRLTATACTVACTVLALSSAARADALAEAVIDQHILPTYAQLASESAEFATLAQSDCAPTSEAVRNAWGAAFDAWVA
ASHLRFGPSEVDNRAFAIAFWPDSRSKTPKALRSLLTNRSPVVDTPEDFATASVAVRGFYALEYLFFDPAYADLGDPDYA
CAFVQAVARDLARNSAAILDDWEQDYADQLRTPAARYRSETEAHQELFKALTTGLEILADMRIGRPLGTFDAPKPNRAEA
RRSGRSLRHIEIQLQSLRELALLLSANDGALTEHLTQVFDKADRHADQLSDDPSLAGITDPQKRFLLETLQQDVFEIKEI
ALRDLGPKLGVEAGFNALDGD

Specific function: Unknown

COG id: COG3489

COG function: function code R; Predicted periplasmic lipoprotein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37386; Mature: 37255

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLLYRLTATACTVACTVLALSSAARADALAEAVIDQHILPTYAQLASESAEFATLAQSD
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHC
CAPTSEAVRNAWGAAFDAWVAASHLRFGPSEVDNRAFAIAFWPDSRSKTPKALRSLLTNR
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEECCCCCCCCHHHHHHHHCCC
SPVVDTPEDFATASVAVRGFYALEYLFFDPAYADLGDPDYACAFVQAVARDLARNSAAIL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
DDWEQDYADQLRTPAARYRSETEAHQELFKALTTGLEILADMRIGRPLGTFDAPKPNRAE
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
ARRSGRSLRHIEIQLQSLRELALLLSANDGALTEHLTQVFDKADRHADQLSDDPSLAGIT
HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DPQKRFLLETLQQDVFEIKEIALRDLGPKLGVEAGFNALDGD
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC
>Mature Secondary Structure 
PLLYRLTATACTVACTVLALSSAARADALAEAVIDQHILPTYAQLASESAEFATLAQSD
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHC
CAPTSEAVRNAWGAAFDAWVAASHLRFGPSEVDNRAFAIAFWPDSRSKTPKALRSLLTNR
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEECCCCCCCCHHHHHHHHCCC
SPVVDTPEDFATASVAVRGFYALEYLFFDPAYADLGDPDYACAFVQAVARDLARNSAAIL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
DDWEQDYADQLRTPAARYRSETEAHQELFKALTTGLEILADMRIGRPLGTFDAPKPNRAE
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
ARRSGRSLRHIEIQLQSLRELALLLSANDGALTEHLTQVFDKADRHADQLSDDPSLAGIT
HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DPQKRFLLETLQQDVFEIKEIALRDLGPKLGVEAGFNALDGD
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA