| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082044
Identifier: 99082044
GI number: 99082044
Start: 2314503
End: 2315603
Strand: Direct
Name: 99082044
Synonym: TM1040_2204
Alternate gene names: NA
Gene position: 2314503-2315603 (Clockwise)
Preceding gene: 99082043
Following gene: 99082045
Centisome position: 72.31
GC content: 65.4
Gene sequence:
>1101_bases ATGCCCTCTCGACGCGGCTTTCTTGCAGGTCTGTTGGCCAGCAGCGTGACGCCAACCGCCACATGGGCCGATGTCGGCGC GCCGGCCTATCTCTCTGCGGGCAAGGACGCGCTGGGGCTGTTTGTGATGGCCGGGCTTTCGGCGGCGGGCGAGGTGCTGT TTCGCCACCCGCTGCCCGATCGCGGCCATGCGGCCAGCGCTCACCCCACACGCCCCGAAGCGGTGGCCTTTGCCCGCCGC CCCGGGCGCTTTGCCGATGTGATCGACTGCCGTAGCGGCGCGCAGCTGGCTCGCCTTGAGCCCCCCGAGGGGCATCATTT TTATGGGCACGGCGTGTTCTCGCCCGAAGGGGAGGTGCTTTACACCACCGAGAACGACTATGCGCGCGGTGCGGGCGTGA TCGGTGTCTGGAACGCAGGCGACTACCACCGCATTGGCCAGTTTTCCTCGGGAGGCATCGGCCCGCACGAGATGCTCTTG CGCCGCGACGCCCCCGGTCTTGTGGTGGCCAATGGGGGCATCGAAACCCACCCCGAGAGCGGCCGCGCCAAACTCAACAT CCCCTTCATGCGCCCCAATCTCAGCTATCTGAGGCTTTCGGGCGAAATACAGCACCAAATGGAACTGCCCGCCGATCTGC ACAAGAACTCGATCCGTCACATCGCGGTGCGCAGCGATGGCGCGGTGGGCTTTGCGATGCAATGGCAGGGAGATCTGGGC GCTGATGTGCCCATTGTCGGCCTGCATCAACCCGGCAGCGCACCGCGCTTGATGGCTGAGGATGACCCGCGCCTGCGCAA CCTCAATGGCTATGGTGGCTCGATTGCGTTCTCAGGAGATGAGACCGCAATCGCTGTGACCTCGCCGCGCGGCGGTGTGG TGCAGGTGATGGACTGCACGAGCGGTGCCTTGCAGGCGGAACATGCCCTCTCGGATGTCTGCGGTTTGGCGCCCCTGAAA GACGGTTTTCTGGTGAGCACCGGAACCGGGATCATGGCTCAGATCGGCACAGAGGTAACGACGCTCACGCAGGCGCCCCT GGCTTGGGACAACCACCTCATCGCCCTTTCCTCGGCGGCATCGGCACCACGCCAGCCCTAA
Upstream 100 bases:
>100_bases CCTGCGTGATCTCGGCCCCAAACTGGGTGTCGAGGCCGGCTTCAACGCGCTGGATGGCGACTGACCACGTGTCGCATTGC ACTGATACAGGAGTTTCAAC
Downstream 100 bases:
>100_bases GCAGATTCGCGTCAAACACCGATACAAAGCCCCTCTGCCCTTTTGCGAGGGGCTTTCTTTTTGATGCCACCCAATACCAA AACGAAAATCAATAGTGACA
Product: hypothetical protein
Products: NA
Alternate protein names: Secreted Protein; Lipoprotein; Tat Pathway Signal Sequence Domain-Containing Protein
Number of amino acids: Translated: 366; Mature: 365
Protein sequence:
>366_residues MPSRRGFLAGLLASSVTPTATWADVGAPAYLSAGKDALGLFVMAGLSAAGEVLFRHPLPDRGHAASAHPTRPEAVAFARR PGRFADVIDCRSGAQLARLEPPEGHHFYGHGVFSPEGEVLYTTENDYARGAGVIGVWNAGDYHRIGQFSSGGIGPHEMLL RRDAPGLVVANGGIETHPESGRAKLNIPFMRPNLSYLRLSGEIQHQMELPADLHKNSIRHIAVRSDGAVGFAMQWQGDLG ADVPIVGLHQPGSAPRLMAEDDPRLRNLNGYGGSIAFSGDETAIAVTSPRGGVVQVMDCTSGALQAEHALSDVCGLAPLK DGFLVSTGTGIMAQIGTEVTTLTQAPLAWDNHLIALSSAASAPRQP
Sequences:
>Translated_366_residues MPSRRGFLAGLLASSVTPTATWADVGAPAYLSAGKDALGLFVMAGLSAAGEVLFRHPLPDRGHAASAHPTRPEAVAFARR PGRFADVIDCRSGAQLARLEPPEGHHFYGHGVFSPEGEVLYTTENDYARGAGVIGVWNAGDYHRIGQFSSGGIGPHEMLL RRDAPGLVVANGGIETHPESGRAKLNIPFMRPNLSYLRLSGEIQHQMELPADLHKNSIRHIAVRSDGAVGFAMQWQGDLG ADVPIVGLHQPGSAPRLMAEDDPRLRNLNGYGGSIAFSGDETAIAVTSPRGGVVQVMDCTSGALQAEHALSDVCGLAPLK DGFLVSTGTGIMAQIGTEVTTLTQAPLAWDNHLIALSSAASAPRQP >Mature_365_residues PSRRGFLAGLLASSVTPTATWADVGAPAYLSAGKDALGLFVMAGLSAAGEVLFRHPLPDRGHAASAHPTRPEAVAFARRP GRFADVIDCRSGAQLARLEPPEGHHFYGHGVFSPEGEVLYTTENDYARGAGVIGVWNAGDYHRIGQFSSGGIGPHEMLLR RDAPGLVVANGGIETHPESGRAKLNIPFMRPNLSYLRLSGEIQHQMELPADLHKNSIRHIAVRSDGAVGFAMQWQGDLGA DVPIVGLHQPGSAPRLMAEDDPRLRNLNGYGGSIAFSGDETAIAVTSPRGGVVQVMDCTSGALQAEHALSDVCGLAPLKD GFLVSTGTGIMAQIGTEVTTLTQAPLAWDNHLIALSSAASAPRQP
Specific function: Unknown
COG id: COG3490
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38463; Mature: 38332
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSRRGFLAGLLASSVTPTATWADVGAPAYLSAGKDALGLFVMAGLSAAGEVLFRHPLPD CCCCHHHHHHHHHHCCCCCCCHHHCCCCCEECCCCHHHHHHHHHHHCHHCCEEEECCCCC RGHAASAHPTRPEAVAFARRPGRFADVIDCRSGAQLARLEPPEGHHFYGHGVFSPEGEVL CCCCCCCCCCCCHHEEEECCCCCCCHHEECCCCCCEEECCCCCCCEEEECCEECCCCCEE YTTENDYARGAGVIGVWNAGDYHRIGQFSSGGIGPHEMLLRRDAPGLVVANGGIETHPES EEECCCCCCCCCEEEEECCCCCHHCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCC GRAKLNIPFMRPNLSYLRLSGEIQHQMELPADLHKNSIRHIAVRSDGAVGFAMQWQGDLG CCEEEEEEEECCCCEEEEECCCHHEECCCCHHHHCCCEEEEEEECCCCEEEEEEECCCCC ADVPIVGLHQPGSAPRLMAEDDPRLRNLNGYGGSIAFSGDETAIAVTSPRGGVVQVMDCT CCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCEEEEEECCCCCEEEEEECC SGALQAEHALSDVCGLAPLKDGFLVSTGTGIMAQIGTEVTTLTQAPLAWDNHLIALSSAA CCHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEHHCCCEEEEECCCCCCCCEEEEEECCC SAPRQP CCCCCC >Mature Secondary Structure PSRRGFLAGLLASSVTPTATWADVGAPAYLSAGKDALGLFVMAGLSAAGEVLFRHPLPD CCCHHHHHHHHHHCCCCCCCHHHCCCCCEECCCCHHHHHHHHHHHCHHCCEEEECCCCC RGHAASAHPTRPEAVAFARRPGRFADVIDCRSGAQLARLEPPEGHHFYGHGVFSPEGEVL CCCCCCCCCCCCHHEEEECCCCCCCHHEECCCCCCEEECCCCCCCEEEECCEECCCCCEE YTTENDYARGAGVIGVWNAGDYHRIGQFSSGGIGPHEMLLRRDAPGLVVANGGIETHPES EEECCCCCCCCCEEEEECCCCCHHCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCC GRAKLNIPFMRPNLSYLRLSGEIQHQMELPADLHKNSIRHIAVRSDGAVGFAMQWQGDLG CCEEEEEEEECCCCEEEEECCCHHEECCCCHHHHCCCEEEEEEECCCCEEEEEEECCCCC ADVPIVGLHQPGSAPRLMAEDDPRLRNLNGYGGSIAFSGDETAIAVTSPRGGVVQVMDCT CCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCEEEEEECCCCCEEEEEECC SGALQAEHALSDVCGLAPLKDGFLVSTGTGIMAQIGTEVTTLTQAPLAWDNHLIALSSAA CCHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEHHCCCEEEEECCCCCCCCEEEEEECCC SAPRQP CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA