Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082042

Identifier: 99082042

GI number: 99082042

Start: 2311933

End: 2313438

Strand: Direct

Name: 99082042

Synonym: TM1040_2202

Alternate gene names: NA

Gene position: 2311933-2313438 (Clockwise)

Preceding gene: 99082041

Following gene: 99082043

Centisome position: 72.23

GC content: 63.61

Gene sequence:

>1506_bases
GTGCTGGCCGCACCGCTTCATGCGACGGACCGCCCTGCCCCCGCGGCGCCTGGTTTGGCAGAGCCGCATCTGTCGATCTT
GCCCCGAACCACACATGAAACCCGTCGGGTGGAACGCGTCACCGCGCCCACTGAGGACTTTGCTGCACCCGAAGCGTTCG
AGGAAAACTCTGCCGGAACTGCGACCCTGCCGCACACAGATGATCGCGATGCCTTCAGCCAGCCGCCCGCAAACCTCACC
TTTGAGCAAGGGTTGGAGTTTCATCTCGGGGAAGCGCTGTTTGACAAACTATGGGTGTTTTCTCCGGCCTCGACGCTGGC
GTCAGATGGGCTCGGCCCCGTCTACAATGCCCGCGCCTGCCAGCGATGTCATATCCGCGACGGTCGTGGTCATTTGCCAG
AGGGGCCGGACTATCGCTCTGCCTCGACGTTTTTGCGCATATCGATCCCGGGCCCGGTGCCACCGCACCTGCGCGCCATT
CCAGACTATATCGGCATGGTGCCAGAGCCGACCTATGGCTGGCAGTTGCAGGATTTTTCTGCCCCCGGCGTAGATCCCGA
ATACCGCCTGTCCGTCACCTTTACCGAGGAAGAAATTGCCCTGAATGGCGGCGAGGTCGCGCATCTGCGCAAACCCCAAT
TCGAGGCGTCTGCGCTCAAATACGGCCCGCTTGATTCAGAGGCTATGCTGTCACCGCGCGTCGCTCCACCGATGATCGGG
CTCGGCCTTCTGGAGGCCATCCCGGCCGCCGACATCCTCGCGCTGGCCGACCCGGACGACCTGGACGGCGATGGCATCTC
GGGGCGCGCCAACCTCGTATGGTCGAAGGAATTCGACCAGGTCATGCTTGGTCGGTTTGGCCTCAAAGCCGGGACCGCCA
CCATTCACGAACAATCCGCGGCGGCCTTCTCTGGCGATATCGGCATCTCGACCCCTTTGTTTCCCCAGCCCTACGGGGAC
TGCACCGCTCAGCAGGTTGATTGCCGCGCTGCCCCTCATGGCGATGAAGACTTGCGGGGCACTGAAATCGACCAGCCCAA
TATGGATCTCGTGACCTTTTACAGCCGCAATATCGCAGTACCGGCCCGCCGCAACTTGGATGCGCCAGAGGTGTTGCGCG
GTAAATCCGTATTCTACGAGATCGGCTGCACCAGCTGCCACACCCCGAAGTTTGTCACCCACCGCCTGATAGACCGCCCC
GAGCAGAGCTTTCAGCTCATCTGGCCCTACTCTGACCTGCTGCTTCACGATATGGGTGAGGGGCTGGCCGACAACCGCCC
CGAAGCGCGCGCCACGGGGCGCGAGTGGCGCACCGCCCCGCTCTGGGGGATCGGGCTGACGCAACAGGTCTCTGCTCGCG
CCACGTTCCTGCATGATGGCCGCGCCCGCACCCTTCTTGAGGCGATCCTCTGGCACGGCGGCGAAGCACAAGCCGCCCGC
GACCGGGTGGTGGCCCTGCCCCCTGCCGACCGCGCGGCGCTTATTTCATTCCTGGAGTCCCTTTGA

Upstream 100 bases:

>100_bases
CACGACCGCGTTGGCGCCGAAAACTACGCGCAGCTCAACGCCTCCAAGATGGACGAAGCCGAGTAACTCGGTACCAGTTC
TCGGTGCGGCCCTCGCTCTG

Downstream 100 bases:

>100_bases
TGCCCCTCTTATACCGCCTCACCGCCACCGCCTGCACCGTTGCCTGCACCGTCTTGGCACTTTCGAGCGCCGCCCGCGCG
GACGCACTTGCAGAGGCGGT

Product: hypothetical protein

Products: NA

Alternate protein names: Lipoprotein; Thiol Oxidoreductase-Like; Thiol Oxidoreductase-Like Protein; Exported Protein; Signal Peptide

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MLAAPLHATDRPAPAAPGLAEPHLSILPRTTHETRRVERVTAPTEDFAAPEAFEENSAGTATLPHTDDRDAFSQPPANLT
FEQGLEFHLGEALFDKLWVFSPASTLASDGLGPVYNARACQRCHIRDGRGHLPEGPDYRSASTFLRISIPGPVPPHLRAI
PDYIGMVPEPTYGWQLQDFSAPGVDPEYRLSVTFTEEEIALNGGEVAHLRKPQFEASALKYGPLDSEAMLSPRVAPPMIG
LGLLEAIPAADILALADPDDLDGDGISGRANLVWSKEFDQVMLGRFGLKAGTATIHEQSAAAFSGDIGISTPLFPQPYGD
CTAQQVDCRAAPHGDEDLRGTEIDQPNMDLVTFYSRNIAVPARRNLDAPEVLRGKSVFYEIGCTSCHTPKFVTHRLIDRP
EQSFQLIWPYSDLLLHDMGEGLADNRPEARATGREWRTAPLWGIGLTQQVSARATFLHDGRARTLLEAILWHGGEAQAAR
DRVVALPPADRAALISFLESL

Sequences:

>Translated_501_residues
MLAAPLHATDRPAPAAPGLAEPHLSILPRTTHETRRVERVTAPTEDFAAPEAFEENSAGTATLPHTDDRDAFSQPPANLT
FEQGLEFHLGEALFDKLWVFSPASTLASDGLGPVYNARACQRCHIRDGRGHLPEGPDYRSASTFLRISIPGPVPPHLRAI
PDYIGMVPEPTYGWQLQDFSAPGVDPEYRLSVTFTEEEIALNGGEVAHLRKPQFEASALKYGPLDSEAMLSPRVAPPMIG
LGLLEAIPAADILALADPDDLDGDGISGRANLVWSKEFDQVMLGRFGLKAGTATIHEQSAAAFSGDIGISTPLFPQPYGD
CTAQQVDCRAAPHGDEDLRGTEIDQPNMDLVTFYSRNIAVPARRNLDAPEVLRGKSVFYEIGCTSCHTPKFVTHRLIDRP
EQSFQLIWPYSDLLLHDMGEGLADNRPEARATGREWRTAPLWGIGLTQQVSARATFLHDGRARTLLEAILWHGGEAQAAR
DRVVALPPADRAALISFLESL
>Mature_501_residues
MLAAPLHATDRPAPAAPGLAEPHLSILPRTTHETRRVERVTAPTEDFAAPEAFEENSAGTATLPHTDDRDAFSQPPANLT
FEQGLEFHLGEALFDKLWVFSPASTLASDGLGPVYNARACQRCHIRDGRGHLPEGPDYRSASTFLRISIPGPVPPHLRAI
PDYIGMVPEPTYGWQLQDFSAPGVDPEYRLSVTFTEEEIALNGGEVAHLRKPQFEASALKYGPLDSEAMLSPRVAPPMIG
LGLLEAIPAADILALADPDDLDGDGISGRANLVWSKEFDQVMLGRFGLKAGTATIHEQSAAAFSGDIGISTPLFPQPYGD
CTAQQVDCRAAPHGDEDLRGTEIDQPNMDLVTFYSRNIAVPARRNLDAPEVLRGKSVFYEIGCTSCHTPKFVTHRLIDRP
EQSFQLIWPYSDLLLHDMGEGLADNRPEARATGREWRTAPLWGIGLTQQVSARATFLHDGRARTLLEAILWHGGEAQAAR
DRVVALPPADRAALISFLESL

Specific function: Unknown

COG id: COG3488

COG function: function code C; Predicted thiol oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54573; Mature: 54573

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS51007 CYTC L=RR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAAPLHATDRPAPAAPGLAEPHLSILPRTTHETRRVERVTAPTEDFAAPEAFEENSAGT
CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHCCCCHHHCCCCHHCCCCCCC
ATLPHTDDRDAFSQPPANLTFEQGLEFHLGEALFDKLWVFSPASTLASDGLGPVYNARAC
EECCCCCCCHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHH
QRCHIRDGRGHLPEGPDYRSASTFLRISIPGPVPPHLRAIPDYIGMVPEPTYGWQLQDFS
HCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCC
APGVDPEYRLSVTFTEEEIALNGGEVAHLRKPQFEASALKYGPLDSEAMLSPRVAPPMIG
CCCCCCCEEEEEEEEHHHEEECCCCEEEECCCCCCCHHEECCCCCCHHHCCCCCCCCHHH
LGLLEAIPAADILALADPDDLDGDGISGRANLVWSKEFDQVMLGRFGLKAGTATIHEQSA
HHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCHHHCCH
AAFSGDIGISTPLFPQPYGDCTAQQVDCRAAPHGDEDLRGTEIDQPNMDLVTFYSRNIAV
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEC
PARRNLDAPEVLRGKSVFYEIGCTSCHTPKFVTHRLIDRPEQSFQLIWPYSDLLLHDMGE
CHHCCCCCHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC
GLADNRPEARATGREWRTAPLWGIGLTQQVSARATFLHDGRARTLLEAILWHGGEAQAAR
CCCCCCCCHHCCCCCCCCCCEECCCCCHHHHHHEEEEECCHHHHHHHHHHHCCCCCHHCC
DRVVALPPADRAALISFLESL
CCEEEECCCCHHHHHHHHHHC
>Mature Secondary Structure
MLAAPLHATDRPAPAAPGLAEPHLSILPRTTHETRRVERVTAPTEDFAAPEAFEENSAGT
CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHCCCCHHHCCCCHHCCCCCCC
ATLPHTDDRDAFSQPPANLTFEQGLEFHLGEALFDKLWVFSPASTLASDGLGPVYNARAC
EECCCCCCCHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHH
QRCHIRDGRGHLPEGPDYRSASTFLRISIPGPVPPHLRAIPDYIGMVPEPTYGWQLQDFS
HCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCC
APGVDPEYRLSVTFTEEEIALNGGEVAHLRKPQFEASALKYGPLDSEAMLSPRVAPPMIG
CCCCCCCEEEEEEEEHHHEEECCCCEEEECCCCCCCHHEECCCCCCHHHCCCCCCCCHHH
LGLLEAIPAADILALADPDDLDGDGISGRANLVWSKEFDQVMLGRFGLKAGTATIHEQSA
HHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCHHHCCH
AAFSGDIGISTPLFPQPYGDCTAQQVDCRAAPHGDEDLRGTEIDQPNMDLVTFYSRNIAV
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEC
PARRNLDAPEVLRGKSVFYEIGCTSCHTPKFVTHRLIDRPEQSFQLIWPYSDLLLHDMGE
CHHCCCCCHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC
GLADNRPEARATGREWRTAPLWGIGLTQQVSARATFLHDGRARTLLEAILWHGGEAQAAR
CCCCCCCCHHCCCCCCCCCCEECCCCCHHHHHHEEEEECCHHHHHHHHHHHCCCCCHHCC
DRVVALPPADRAALISFLESL
CCEEEECCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA