| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082042
Identifier: 99082042
GI number: 99082042
Start: 2311933
End: 2313438
Strand: Direct
Name: 99082042
Synonym: TM1040_2202
Alternate gene names: NA
Gene position: 2311933-2313438 (Clockwise)
Preceding gene: 99082041
Following gene: 99082043
Centisome position: 72.23
GC content: 63.61
Gene sequence:
>1506_bases GTGCTGGCCGCACCGCTTCATGCGACGGACCGCCCTGCCCCCGCGGCGCCTGGTTTGGCAGAGCCGCATCTGTCGATCTT GCCCCGAACCACACATGAAACCCGTCGGGTGGAACGCGTCACCGCGCCCACTGAGGACTTTGCTGCACCCGAAGCGTTCG AGGAAAACTCTGCCGGAACTGCGACCCTGCCGCACACAGATGATCGCGATGCCTTCAGCCAGCCGCCCGCAAACCTCACC TTTGAGCAAGGGTTGGAGTTTCATCTCGGGGAAGCGCTGTTTGACAAACTATGGGTGTTTTCTCCGGCCTCGACGCTGGC GTCAGATGGGCTCGGCCCCGTCTACAATGCCCGCGCCTGCCAGCGATGTCATATCCGCGACGGTCGTGGTCATTTGCCAG AGGGGCCGGACTATCGCTCTGCCTCGACGTTTTTGCGCATATCGATCCCGGGCCCGGTGCCACCGCACCTGCGCGCCATT CCAGACTATATCGGCATGGTGCCAGAGCCGACCTATGGCTGGCAGTTGCAGGATTTTTCTGCCCCCGGCGTAGATCCCGA ATACCGCCTGTCCGTCACCTTTACCGAGGAAGAAATTGCCCTGAATGGCGGCGAGGTCGCGCATCTGCGCAAACCCCAAT TCGAGGCGTCTGCGCTCAAATACGGCCCGCTTGATTCAGAGGCTATGCTGTCACCGCGCGTCGCTCCACCGATGATCGGG CTCGGCCTTCTGGAGGCCATCCCGGCCGCCGACATCCTCGCGCTGGCCGACCCGGACGACCTGGACGGCGATGGCATCTC GGGGCGCGCCAACCTCGTATGGTCGAAGGAATTCGACCAGGTCATGCTTGGTCGGTTTGGCCTCAAAGCCGGGACCGCCA CCATTCACGAACAATCCGCGGCGGCCTTCTCTGGCGATATCGGCATCTCGACCCCTTTGTTTCCCCAGCCCTACGGGGAC TGCACCGCTCAGCAGGTTGATTGCCGCGCTGCCCCTCATGGCGATGAAGACTTGCGGGGCACTGAAATCGACCAGCCCAA TATGGATCTCGTGACCTTTTACAGCCGCAATATCGCAGTACCGGCCCGCCGCAACTTGGATGCGCCAGAGGTGTTGCGCG GTAAATCCGTATTCTACGAGATCGGCTGCACCAGCTGCCACACCCCGAAGTTTGTCACCCACCGCCTGATAGACCGCCCC GAGCAGAGCTTTCAGCTCATCTGGCCCTACTCTGACCTGCTGCTTCACGATATGGGTGAGGGGCTGGCCGACAACCGCCC CGAAGCGCGCGCCACGGGGCGCGAGTGGCGCACCGCCCCGCTCTGGGGGATCGGGCTGACGCAACAGGTCTCTGCTCGCG CCACGTTCCTGCATGATGGCCGCGCCCGCACCCTTCTTGAGGCGATCCTCTGGCACGGCGGCGAAGCACAAGCCGCCCGC GACCGGGTGGTGGCCCTGCCCCCTGCCGACCGCGCGGCGCTTATTTCATTCCTGGAGTCCCTTTGA
Upstream 100 bases:
>100_bases CACGACCGCGTTGGCGCCGAAAACTACGCGCAGCTCAACGCCTCCAAGATGGACGAAGCCGAGTAACTCGGTACCAGTTC TCGGTGCGGCCCTCGCTCTG
Downstream 100 bases:
>100_bases TGCCCCTCTTATACCGCCTCACCGCCACCGCCTGCACCGTTGCCTGCACCGTCTTGGCACTTTCGAGCGCCGCCCGCGCG GACGCACTTGCAGAGGCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein; Thiol Oxidoreductase-Like; Thiol Oxidoreductase-Like Protein; Exported Protein; Signal Peptide
Number of amino acids: Translated: 501; Mature: 501
Protein sequence:
>501_residues MLAAPLHATDRPAPAAPGLAEPHLSILPRTTHETRRVERVTAPTEDFAAPEAFEENSAGTATLPHTDDRDAFSQPPANLT FEQGLEFHLGEALFDKLWVFSPASTLASDGLGPVYNARACQRCHIRDGRGHLPEGPDYRSASTFLRISIPGPVPPHLRAI PDYIGMVPEPTYGWQLQDFSAPGVDPEYRLSVTFTEEEIALNGGEVAHLRKPQFEASALKYGPLDSEAMLSPRVAPPMIG LGLLEAIPAADILALADPDDLDGDGISGRANLVWSKEFDQVMLGRFGLKAGTATIHEQSAAAFSGDIGISTPLFPQPYGD CTAQQVDCRAAPHGDEDLRGTEIDQPNMDLVTFYSRNIAVPARRNLDAPEVLRGKSVFYEIGCTSCHTPKFVTHRLIDRP EQSFQLIWPYSDLLLHDMGEGLADNRPEARATGREWRTAPLWGIGLTQQVSARATFLHDGRARTLLEAILWHGGEAQAAR DRVVALPPADRAALISFLESL
Sequences:
>Translated_501_residues MLAAPLHATDRPAPAAPGLAEPHLSILPRTTHETRRVERVTAPTEDFAAPEAFEENSAGTATLPHTDDRDAFSQPPANLT FEQGLEFHLGEALFDKLWVFSPASTLASDGLGPVYNARACQRCHIRDGRGHLPEGPDYRSASTFLRISIPGPVPPHLRAI PDYIGMVPEPTYGWQLQDFSAPGVDPEYRLSVTFTEEEIALNGGEVAHLRKPQFEASALKYGPLDSEAMLSPRVAPPMIG LGLLEAIPAADILALADPDDLDGDGISGRANLVWSKEFDQVMLGRFGLKAGTATIHEQSAAAFSGDIGISTPLFPQPYGD CTAQQVDCRAAPHGDEDLRGTEIDQPNMDLVTFYSRNIAVPARRNLDAPEVLRGKSVFYEIGCTSCHTPKFVTHRLIDRP EQSFQLIWPYSDLLLHDMGEGLADNRPEARATGREWRTAPLWGIGLTQQVSARATFLHDGRARTLLEAILWHGGEAQAAR DRVVALPPADRAALISFLESL >Mature_501_residues MLAAPLHATDRPAPAAPGLAEPHLSILPRTTHETRRVERVTAPTEDFAAPEAFEENSAGTATLPHTDDRDAFSQPPANLT FEQGLEFHLGEALFDKLWVFSPASTLASDGLGPVYNARACQRCHIRDGRGHLPEGPDYRSASTFLRISIPGPVPPHLRAI PDYIGMVPEPTYGWQLQDFSAPGVDPEYRLSVTFTEEEIALNGGEVAHLRKPQFEASALKYGPLDSEAMLSPRVAPPMIG LGLLEAIPAADILALADPDDLDGDGISGRANLVWSKEFDQVMLGRFGLKAGTATIHEQSAAAFSGDIGISTPLFPQPYGD CTAQQVDCRAAPHGDEDLRGTEIDQPNMDLVTFYSRNIAVPARRNLDAPEVLRGKSVFYEIGCTSCHTPKFVTHRLIDRP EQSFQLIWPYSDLLLHDMGEGLADNRPEARATGREWRTAPLWGIGLTQQVSARATFLHDGRARTLLEAILWHGGEAQAAR DRVVALPPADRAALISFLESL
Specific function: Unknown
COG id: COG3488
COG function: function code C; Predicted thiol oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54573; Mature: 54573
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: PS51007 CYTC L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAAPLHATDRPAPAAPGLAEPHLSILPRTTHETRRVERVTAPTEDFAAPEAFEENSAGT CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHCCCCHHHCCCCHHCCCCCCC ATLPHTDDRDAFSQPPANLTFEQGLEFHLGEALFDKLWVFSPASTLASDGLGPVYNARAC EECCCCCCCHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHH QRCHIRDGRGHLPEGPDYRSASTFLRISIPGPVPPHLRAIPDYIGMVPEPTYGWQLQDFS HCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCC APGVDPEYRLSVTFTEEEIALNGGEVAHLRKPQFEASALKYGPLDSEAMLSPRVAPPMIG CCCCCCCEEEEEEEEHHHEEECCCCEEEECCCCCCCHHEECCCCCCHHHCCCCCCCCHHH LGLLEAIPAADILALADPDDLDGDGISGRANLVWSKEFDQVMLGRFGLKAGTATIHEQSA HHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCHHHCCH AAFSGDIGISTPLFPQPYGDCTAQQVDCRAAPHGDEDLRGTEIDQPNMDLVTFYSRNIAV HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEC PARRNLDAPEVLRGKSVFYEIGCTSCHTPKFVTHRLIDRPEQSFQLIWPYSDLLLHDMGE CHHCCCCCHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC GLADNRPEARATGREWRTAPLWGIGLTQQVSARATFLHDGRARTLLEAILWHGGEAQAAR CCCCCCCCHHCCCCCCCCCCEECCCCCHHHHHHEEEEECCHHHHHHHHHHHCCCCCHHCC DRVVALPPADRAALISFLESL CCEEEECCCCHHHHHHHHHHC >Mature Secondary Structure MLAAPLHATDRPAPAAPGLAEPHLSILPRTTHETRRVERVTAPTEDFAAPEAFEENSAGT CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHCCCCHHHCCCCHHCCCCCCC ATLPHTDDRDAFSQPPANLTFEQGLEFHLGEALFDKLWVFSPASTLASDGLGPVYNARAC EECCCCCCCHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHH QRCHIRDGRGHLPEGPDYRSASTFLRISIPGPVPPHLRAIPDYIGMVPEPTYGWQLQDFS HCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCC APGVDPEYRLSVTFTEEEIALNGGEVAHLRKPQFEASALKYGPLDSEAMLSPRVAPPMIG CCCCCCCEEEEEEEEHHHEEECCCCEEEECCCCCCCHHEECCCCCCHHHCCCCCCCCHHH LGLLEAIPAADILALADPDDLDGDGISGRANLVWSKEFDQVMLGRFGLKAGTATIHEQSA HHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCHHHCCH AAFSGDIGISTPLFPQPYGDCTAQQVDCRAAPHGDEDLRGTEIDQPNMDLVTFYSRNIAV HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEC PARRNLDAPEVLRGKSVFYEIGCTSCHTPKFVTHRLIDRPEQSFQLIWPYSDLLLHDMGE CHHCCCCCHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC GLADNRPEARATGREWRTAPLWGIGLTQQVSARATFLHDGRARTLLEAILWHGGEAQAAR CCCCCCCCHHCCCCCCCCCCEECCCCCHHHHHHEEEEECCHHHHHHHHHHHCCCCCHHCC DRVVALPPADRAALISFLESL CCEEEECCCCHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA